------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for rdkit-2023.03.2: DOCS=on: Build and/or install documentation PGSQL=off: Build the PostgreSQL cartridge PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/rdkit XDG_CONFIG_HOME=/construction/science/rdkit XDG_CACHE_HOME=/construction/science/rdkit/.cache HOME=/construction/science/rdkit TMPDIR="/tmp" PATH=/construction/science/rdkit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/rdkit/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/rdkit XDG_CONFIG_HOME=/construction/science/rdkit XDG_CACHE_HOME=/construction/science/rdkit/.cache HOME=/construction/science/rdkit TMPDIR="/tmp" PATH=/construction/science/rdkit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/rdkit/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/rdkit/stage SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- SHLIB_VER=2023.03.2 PORTDOCS="" DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " LITTLE_ENDIAN="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/RDKit" EXAMPLESDIR="share/examples/rdkit" DATADIR="share/RDKit" WWWDIR="www/rdkit" ETCDIR="etc/rdkit" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- DOCS="" NO_DOCS="@comment " PGSQL="@comment " NO_PGSQL="" PYTHON="" NO_PYTHON="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/RDKit DOCSDIR=/usr/local/share/doc/RDKit EXAMPLESDIR=/usr/local/share/examples/rdkit WWWDIR=/usr/local/www/rdkit ETCDIR=/usr/local/etc/rdkit SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/catch-2.13.10.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/flex-2.6.4_2.pkg Installing /packages/All/rapidjson-1.1.0.709.pkg Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/libtextstyle-0.21.1.pkg Installing /packages/All/m4-1.4.19,1.pkg Installing /packages/All/bison-3.8.2,1.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/blas-3.11.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lapack-3.11.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/eigen-3.4.0_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/icu-73.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/boost-libs-1.82.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from boost-libs-1.82.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/maeparser-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/coordgenlibs-3.0.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/brotli-1.0.9,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/png-1.6.39.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/freetype2-2.12.1_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/py39-boost-libs-1.82.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from py39-boost-libs-1.82.0: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/libimagequant-4.2.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libdeflate-1.18.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/jbigkit-2.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/jpeg-turbo-2.1.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/tiff-4.4.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lcms2-2.15_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/openjpeg-2.5.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/fribidi-1.0.13.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/graphite2-1.3.14.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/pcre2-10.42.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libiconv-1.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/glib-2.76.4,2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/harfbuzz-7.3.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libraqm-0.10.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/giflib-5.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/webp-1.3.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/fontconfig-2.14.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Running fc-cache to build fontconfig cache... Installing /packages/All/tcl86-8.6.13.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXau-1.0.9.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/xorgproto-2022.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXdmcp-1.1.3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxcb-1.15_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libX11-1.8.6,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXext-1.3.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXrender-0.9.10_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXft-2.3.7.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libXScrnSaver-1.2.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/tk86-8.6.13.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-olefile-0.46.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-tkinter-3.9.17_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-pillow-9.5.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/qhull-8.0.2_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-contourpy-1.0.7_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-cycler-0.11.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-six-1.16.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-dateutil-2.8.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-zipp-3.15.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-importlib-resources-5.4.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-pytz-2023.3,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-pyparsing-3.0.9_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-tornado-6.3.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-pluggy-1.0.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-certifi-2023.5.7.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-kiwisolver-1.4.4_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgpg-error-1.47.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgcrypt-1.10.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxslt-1.1.37.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-lxml-4.9.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-appdirs-1.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-fs2-2.4.16.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-unicodedata2-15.0.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-fonttools-4.39.4_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-packaging-23.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-matplotlib-3.7.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libfontenc-1.1.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mkfontscale-1.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/adobe-cmaps-20051217_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/py39-reportlab-3.6.13.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:24 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on file: /usr/local/sbin/pkg - found => Comic_Neue.zip doesn't seem to exist in /distfiles/rdkit-2023.03.2. => Attempting to fetch https://fonts.google.com/download?family=Comic%20Neue&dummy=/Comic_Neue.zip fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/Comic_Neue.zip: size unknown fetch: https://fonts.google.com/download?family=Comic%20Neue&dummy=/Comic_Neue.zip: size of remote file is not known Comic_Neue.zip 0 B 0 Bps Comic_Neue.zip 176 kB 1046 kBps 00s => rdkit-rdkit-Release_2023_03_2_GH0.tar.gz doesn't seem to exist in /distfiles/rdkit-2023.03.2. => Attempting to fetch https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2023_03_2?dummy=/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2023_03_2?dummy=/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rdkit/rdkit/tar.gz/Release_2023_03_2?dummy=/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz: size of remote file is not known rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 0 B 0 Bps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 1328 kB 1477 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 5248 kB 3871 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 10 MB 5417 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 14 MB 4260 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 19 MB 4573 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 23 MB 4173 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 26 MB 3736 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 30 MB 3942 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 34 MB 4082 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 38 MB 4219 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 42 MB 4292 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 47 MB 4596 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 52 MB 4766 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 56 MB 4990 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 61 MB 5160 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 67 MB 5828 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 74 MB 6800 kBps rdkit-rdkit-Release_2023_03_2_GH0.tar.gz 75 MB 4543 kBps 17s => rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz doesn't seem to exist in /distfiles/rdkit-2023.03.2. => Attempting to fetch https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size unknown fetch: https://codeload.github.com/rareylab/RingDecomposerLib/tar.gz/v1.1.3_rdkit?dummy=/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz: size of remote file is not known rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.ta 0 B 0 Bps rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.ta 134 kB 567 kBps 00s ===> Fetching all distfiles required by rdkit-2023.03.2 for building SUCCEEDED 00:00:19 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by rdkit-2023.03.2 for building => SHA256 Checksum OK for rdkit-2023.03.2/Comic_Neue.zip. => SHA256 Checksum OK for rdkit-2023.03.2/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2023.03.2/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by rdkit-2023.03.2 for building ===> Extracting for rdkit-2023.03.2 => SHA256 Checksum OK for rdkit-2023.03.2/Comic_Neue.zip. => SHA256 Checksum OK for rdkit-2023.03.2/rdkit-rdkit-Release_2023_03_2_GH0.tar.gz. => SHA256 Checksum OK for rdkit-2023.03.2/rareylab-RingDecomposerLib-v1.1.3_rdkit_GH0.tar.gz. Archive: /distfiles/rdkit-2023.03.2/Comic_Neue.zip extracting: OFL.txt |  extracting: ComicNeue-Light.ttf | /  extracting: ComicNeue-LightItalic.ttf | /  extracting: ComicNeue-Regular.ttf | /  extracting: ComicNeue-Italic.ttf | /  extracting: ComicNeue-Bold.ttf | /  extracting: ComicNeue-BoldItalic.ttf | /  Extracted Memory Use: 199.19M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for rdkit-2023.03.2 ===> Applying ports patches for rdkit-2023.03.2 from /xports/science/rdkit/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on package: catch>0 - found ===> rdkit-2023.03.2 depends on executable: flex - found ===> rdkit-2023.03.2 depends on package: rapidjson>=0 - found ===> rdkit-2023.03.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> rdkit-2023.03.2 depends on executable: bison - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/cmake - found ===> rdkit-2023.03.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/python3.9 - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> rdkit-2023.03.2 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so) ===> rdkit-2023.03.2 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> rdkit-2023.03.2 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> rdkit-2023.03.2 depends on shared library: libboost_python39.so - found (/usr/local/lib/libboost_python39.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on package: catch>0 - found ===> rdkit-2023.03.2 depends on executable: flex - found ===> rdkit-2023.03.2 depends on package: rapidjson>=0 - found ===> rdkit-2023.03.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> rdkit-2023.03.2 depends on executable: bison - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/cmake - found ===> rdkit-2023.03.2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/python3.9 - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/ccache - found ===> rdkit-2023.03.2 depends on shared library: libboost_system.so - found (/usr/local/lib/libboost_system.so) ===> rdkit-2023.03.2 depends on shared library: libcoordgen.so - found (/usr/local/lib/libcoordgen.so) ===> rdkit-2023.03.2 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> rdkit-2023.03.2 depends on shared library: libmaeparser.so - found (/usr/local/lib/libmaeparser.so) ===> rdkit-2023.03.2 depends on shared library: libboost_python39.so - found (/usr/local/lib/libboost_python39.so) ===> Configuring for rdkit-2023.03.2 ===> Performing out-of-source build /bin/mkdir -p /construction/science/rdkit/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found Catch2: /usr/local/include/catch2 CATCH: /usr/local/include/catch2 -- Found PythonInterp: /usr/local/bin/python3.9 (found version "3.9.17") -- Found PythonLibs: /usr/local/lib/libpython3.9.so (found version "3.9.17") CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:305 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:305 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:2224 (message): No header defined for python-py39; skipping header check (note: header-only libraries have no designated component) Call Stack (most recent call first): CMakeLists.txt:305 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:305 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:305 (find_package) Python Install directory /usr/local/lib/python3.9/site-packages PYTHON Py_ENABLE_SHARED: 1 PYTHON USING LINK LINE: -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib nbval not found, disabling the jupyter tests -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:430 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:430 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:430 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) CMakeLists.txt:430 (find_package) -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.58.0") found components: system serialization iostreams regex == Using strict rotor definition CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) External/CoordGen/CMakeLists.txt:9 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) External/CoordGen/CMakeLists.txt:9 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) External/CoordGen/CMakeLists.txt:9 (find_package) -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.58.0") found components: system iostreams regex -- maeparser include dir set as '/usr/local/include' -- maeparser libraries set as '/usr/local/lib/libmaeparser.so' -- Found maeparser: /usr/local/include -- coordgen include dir set as /usr/local/include -- coordgen libraries set as '/usr/local/lib/libcoordgen.so' -- Found coordgen: /usr/local/include -- Found RingDecomposerLib source in /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/RDStreams/CMakeLists.txt:4 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/RDStreams/CMakeLists.txt:4 (find_package) -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.58.0") found components: iostreams regex CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/GraphMol/FileParsers/CMakeLists.txt:21 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/GraphMol/FileParsers/CMakeLists.txt:21 (find_package) CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/GraphMol/FileParsers/CMakeLists.txt:21 (find_package) -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.58.0") found components: system iostreams regex -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") /construction/science/rdkit/rdkit-Release_2023_03_2/Data/Fonts/ComicNeue-Regular.ttf already there, skipping the download -- Found Freetype: /usr/local/lib/libfreetype.so (found version "2.12.1") CMake Warning at /usr/local/share/cmake/Modules/FindBoost.cmake:1390 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindBoost.cmake:1514 (_Boost_COMPONENT_DEPENDENCIES) /usr/local/share/cmake/Modules/FindBoost.cmake:2125 (_Boost_MISSING_DEPENDENCIES) Code/GraphMol/RGroupDecomposition/CMakeLists.txt:26 (find_package) -- Found Boost: /usr/local/include (found suitable version "1.82.0", minimum required is "1.58.0") found components: program_options -- Found RapidJSON source in /construction/science/rdkit/rdkit-Release_2023_03_2/External -- Configuring done (2.4s) -- Generating done (0.7s) CMake Warning: Manually-specified variables were not used by the project: FETCHCONTENT_FULLY_DISCONNECTED RDK_OPTIMIZE_NATIVE -- Build files have been written to: /construction/science/rdkit/.build SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for rdkit-2023.03.2 /usr/local/bin/cmake -S/construction/science/rdkit/rdkit-Release_2023_03_2 -B/construction/science/rdkit/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles /construction/science/rdkit/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- External/catch/CMakeFiles/catch.dir/all --- --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/all --- --- External/GA/CMakeFiles/ga.dir/all --- --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- External/catch/CMakeFiles/catch.dir/all --- /usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- /usr/bin/make -f External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/build.make External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/depend --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend --- External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/all --- /usr/bin/make -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/depend --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- /usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- /usr/bin/make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- /usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend --- External/GA/CMakeFiles/ga.dir/all --- /usr/bin/make -f External/GA/CMakeFiles/ga.dir/build.make External/GA/CMakeFiles/ga.dir/depend --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- --- External/INCHI-API/CMakeFiles/inchi_support.dir/depend --- --- External/catch/CMakeFiles/catch.dir/all --- --- External/catch/CMakeFiles/catch.dir/depend --- --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/INCHI-API /construction/science/rdkit/.build /construction/science/rdkit/.build/External/INCHI-API /construction/science/rdkit/.build/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake --- External/catch/CMakeFiles/catch.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/catch /construction/science/rdkit/.build /construction/science/rdkit/.build/External/catch /construction/science/rdkit/.build/External/catch/CMakeFiles/catch.dir/DependInfo.cmake --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- --- Code/RDStreams/CMakeFiles/RDStreams.dir/depend --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/depend --- --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDStreams /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDStreams /construction/science/rdkit/.build/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake --- External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/all --- --- External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/depend --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDGeneral /construction/science/rdkit/.build/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- --- External/CoordGen/CMakeFiles/coordgen_support.dir/depend --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies /construction/science/rdkit/.build /construction/science/rdkit/.build/External/RingFamilies /construction/science/rdkit/.build/External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/DependInfo.cmake --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/CoordGen /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen /construction/science/rdkit/.build/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake --- External/GA/CMakeFiles/ga.dir/all --- --- External/GA/CMakeFiles/ga.dir/depend --- --- External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies /construction/science/rdkit/.build /construction/science/rdkit/.build/External/RingFamilies /construction/science/rdkit/.build/External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/DependInfo.cmake --- External/GA/CMakeFiles/ga.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA /construction/science/rdkit/.build /construction/science/rdkit/.build/External/GA /construction/science/rdkit/.build/External/GA/CMakeFiles/ga.dir/DependInfo.cmake --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- /usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- /usr/bin/make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build --- External/catch/CMakeFiles/catch.dir/all --- /usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- --- inchi_support --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- /usr/bin/make -f External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/build.make External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/build --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- /usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- cd /construction/science/rdkit/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /construction/science/rdkit/rdkit-Release_2023_03_2/External/INCHI-API/python/noinchi.py /construction/science/rdkit/rdkit-Release_2023_03_2/rdkit/Chem/inchi.py --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- --- Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o --- --- External/GA/CMakeFiles/ga.dir/all --- /usr/bin/make -f External/GA/CMakeFiles/ga.dir/build.make External/GA/CMakeFiles/ga.dir/build --- External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/all --- /usr/bin/make -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build --- External/GA/CMakeFiles/ga.dir/all --- --- External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o --- --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- [ 1%] Building CXX object Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o --- External/catch/CMakeFiles/catch.dir/all --- [ 1%] Built target catch --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- cd /construction/science/rdkit/.build/Code/RDStreams && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RDSTREAMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRDStreams_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDStreams/CMakeFiles/RDStreams.dir/streams.cpp.o -MF CMakeFiles/RDStreams.dir/streams.cpp.o.d -o CMakeFiles/RDStreams.dir/streams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDStreams/streams.cpp --- External/INCHI-API/CMakeFiles/inchi_support.dir/all --- [ 1%] Built target inchi_support --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o --- --- External/CoordGen/CMakeFiles/coordgen_support.dir/all --- [ 1%] Built target coordgen_support --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o --- [ 1%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o --- [ 1%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o --- cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c --- External/GA/CMakeFiles/ga.dir/all --- [ 1%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o cd /construction/science/rdkit/.build/External/GA && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -MF CMakeFiles/ga.dir/ga/StringChromosome.cpp.o.d -o CMakeFiles/ga.dir/ga/StringChromosome.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA/ga/StringChromosome.cpp --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o --- [ 2%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o --- External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/all --- [ 2%] Built target ringdecomposerlib_support --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c --- External/GA/CMakeFiles/ga.dir/all --- --- External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o --- [ 2%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o --- [ 2%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- [ 2%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o --- [ 2%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o --- [ 2%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o -MF CMakeFiles/RDGeneral.dir/Invariant.cpp.o.d -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral/Invariant.cpp --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o --- cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o --- cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o --- [ 3%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dhc_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o -MF CMakeFiles/hc.dir/hc.c.o.d -o CMakeFiles/hc.dir/hc.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hc.c --- External/GA/CMakeFiles/ga.dir/all --- [ 4%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o cd /construction/science/rdkit/.build/External/GA && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/Chromosome.cpp.o -MF CMakeFiles/ga.dir/ga/Chromosome.cpp.o.d -o CMakeFiles/ga.dir/ga/Chromosome.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA/ga/Chromosome.cpp --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o --- [ 4%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_HC_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dhc_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o -MF CMakeFiles/hc.dir/hcdriver.c.o.d -o CMakeFiles/hc.dir/hcdriver.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/hcdriver.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o --- [ 4%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o --- [ 4%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o --- [ 5%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o --- [ 5%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o --- [ 5%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- --- lib/libRDKithc.so.1.2023.03.2 --- --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- [ 5%] Building C object External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/libexec/ccache/cc -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRingDecomposerLib_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -pthread -MD -MT External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o -MF CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o.d -o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o --- --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- [ 5%] Linking C shared library ../../../../lib/libRDKithc.so cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/link.txt --verbose=1 --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- [ 5%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o -MF CMakeFiles/RDGeneral.dir/types.cpp.o.d -o CMakeFiles/RDGeneral.dir/types.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral/types.cpp --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- /usr/local/libexec/ccache/cc -fPIC -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKithc.so.1 -o ../../../../lib/libRDKithc.so.1.2023.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o -lpthread --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o --- [ 5%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o -MF CMakeFiles/RDGeneral.dir/utils.cpp.o.d -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral/utils.cpp --- Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/all --- cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_symlink_library ../../../../lib/libRDKithc.so.1.2023.03.2 ../../../../lib/libRDKithc.so.1 ../../../../lib/libRDKithc.so [ 5%] Built target hc --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o --- [ 6%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -MF CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral/RDGeneralExceptions.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o --- [ 6%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o --- [ 6%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o --- cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o -MF CMakeFiles/RDGeneral.dir/RDLog.cpp.o.d -o CMakeFiles/RDGeneral.dir/RDLog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral/RDLog.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o --- cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -MF CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o.d -o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral/LocaleSwitcher.cpp --- External/GA/CMakeFiles/ga.dir/all --- --- External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o --- [ 6%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o cd /construction/science/rdkit/.build/External/GA && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -MF CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o.d -o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA/ga/IntegerStringChromosomePolicy.cpp --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o --- [ 6%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeneral_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGENERAL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDGeneral/CMakeFiles/RDGeneral.dir/versions.cpp.o -MF CMakeFiles/RDGeneral.dir/versions.cpp.o.d -o CMakeFiles/RDGeneral.dir/versions.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral/versions.cpp --- External/GA/CMakeFiles/ga.dir/all --- --- External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o --- --- External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o --- --- External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o --- [ 6%] Building CXX object External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o cd /construction/science/rdkit/.build/External/GA && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -MF CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o.d -o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA/ga/BinaryStringChromosomePolicy.cpp --- External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o --- [ 6%] Building CXX object External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o cd /construction/science/rdkit/.build/External/GA && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/util/RandomUtil.cpp.o -MF CMakeFiles/ga.dir/util/RandomUtil.cpp.o.d -o CMakeFiles/ga.dir/util/RandomUtil.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA/util/RandomUtil.cpp --- External/GA/CMakeFiles/ga.dir/util/Util.cpp.o --- [ 6%] Building CXX object External/GA/CMakeFiles/ga.dir/util/Util.cpp.o cd /construction/science/rdkit/.build/External/GA && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Dga_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/GA/CMakeFiles/ga.dir/util/Util.cpp.o -MF CMakeFiles/ga.dir/util/Util.cpp.o.d -o CMakeFiles/ga.dir/util/Util.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA/util/Util.cpp --- External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/all --- --- lib/libRDKitRingDecomposerLib.so.1.2023.03.2 --- [ 6%] Linking C shared library ../../lib/libRDKitRingDecomposerLib.so cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RingDecomposerLib.dir/link.txt --verbose=1 /usr/local/libexec/ccache/cc -fPIC -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRingDecomposerLib.so.1 -o ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o -lpthread cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../lib/libRDKitRingDecomposerLib.so.1 ../../lib/libRDKitRingDecomposerLib.so [ 6%] Built target RingDecomposerLib --- External/GA/CMakeFiles/ga.dir/all --- --- lib/libRDKitga.so.1.2023.03.2 --- [ 6%] Linking CXX shared library ../../lib/libRDKitga.so cd /construction/science/rdkit/.build/External/GA && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ga.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitga.so.1 -o ../../lib/libRDKitga.so.1.2023.03.2 CMakeFiles/ga.dir/ga/StringChromosome.cpp.o CMakeFiles/ga.dir/ga/Chromosome.cpp.o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/util/RandomUtil.cpp.o CMakeFiles/ga.dir/util/Util.cpp.o -lpthread cd /construction/science/rdkit/.build/External/GA && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitga.so.1.2023.03.2 ../../lib/libRDKitga.so.1 ../../lib/libRDKitga.so [ 6%] Built target ga --- Code/RDStreams/CMakeFiles/RDStreams.dir/all --- --- lib/libRDKitRDStreams.so.1.2023.03.2 --- [ 6%] Linking CXX shared library ../../lib/libRDKitRDStreams.so cd /construction/science/rdkit/.build/Code/RDStreams && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDStreams.so.1 -o ../../lib/libRDKitRDStreams.so.1.2023.03.2 CMakeFiles/RDStreams.dir/streams.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib /usr/local/lib/libboost_iostreams.so -lpthread /usr/local/lib/libboost_regex.so cd /construction/science/rdkit/.build/Code/RDStreams && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDStreams.so.1.2023.03.2 ../../lib/libRDKitRDStreams.so.1 ../../lib/libRDKitRDStreams.so [ 6%] Built target RDStreams --- Code/RDGeneral/CMakeFiles/RDGeneral.dir/all --- --- lib/libRDKitRDGeneral.so.1.2023.03.2 --- [ 6%] Linking CXX shared library ../../lib/libRDKitRDGeneral.so cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -ldl -lpthread cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeneral.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1 ../../lib/libRDKitRDGeneral.so [ 6%] Built target RDGeneral --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- /usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/SimDivPickers /construction/science/rdkit/.build/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- --- Code/RDBoost/CMakeFiles/RDBoost.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDBoost /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDBoost /construction/science/rdkit/.build/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs /construction/science/rdkit/.build/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/depend --- --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/EigenSolvers /construction/science/rdkit/.build/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Catalogs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Catalogs /construction/science/rdkit/.build/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- /usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- --- Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o --- --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o --- [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/MaxMinPicker.cpp --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- [ 7%] Building CXX object Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o --- [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDBoost_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDBOOST_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDBoost/CMakeFiles/RDBoost.dir/Wrap.cpp.o -MF CMakeFiles/RDBoost.dir/Wrap.cpp.o.d -o CMakeFiles/RDBoost.dir/Wrap.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDBoost/Wrap.cpp --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/DistPicker.cpp --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o --- [ 7%] Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- [ 7%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SIMDIVPICKERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/HierarchicalClusterPicker.cpp --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DEigenSolvers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_EIGENSOLVERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -MF CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o.d -o CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers/PowerEigenSolver.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o --- [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pth--- Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o --- [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o --- Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o --- read -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/Utils.cpp.o -MF CMakeFiles/DataStructs.dir/Utils.cpp.o.d -o CMakeFiles/DataStructs.dir/Utils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Utils.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o --- cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/SparseBitVect.cpp --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- [ 7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o --- [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o --- Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o --- [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Catalogs/CatalogEntry.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o --- cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/base64.cpp.o -MF CMakeFiles/DataStructs.dir/base64.cpp.o.d -o CMakeFiles/DataStructs.dir/base64.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/base64.cpp --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o --- [ 7%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o --- cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o -MF CMakeFiles/DataStructs.dir/BitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/BitVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/BitVect.cpp --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -MF CMakeFiles/Catalogs.dir/CatalogParams.cpp.o.d -o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Catalogs/CatalogParams.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o --- [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -MF CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o.d -o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/ExplicitBitVect.cpp --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o --- [ 8%] Building CXX object Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCatalogs_EXPORTS -DRDKIT_CATALOGS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Catalogs/CMakeFiles/Catalogs.dir/Catalog.cpp.o -MF CMakeFiles/Catalogs.dir/Catalog.cpp.o.d -o CMakeFiles/Catalogs.dir/Catalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Catalogs/Catalog.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o --- [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/BitOps.cpp.o -MF CMakeFiles/DataStructs.dir/BitOps.cpp.o.d -o CMakeFiles/DataStructs.dir/BitOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/BitOps.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o --- [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteDistMat.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o --- [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/DiscreteValueVect.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o --- [ 8%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/FPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/FPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/FPBReader.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/FPBReader.cpp --- Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o --- [ 9%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDataStructs_EXPORTS -DRDKIT_DATASTRUCTS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -MF CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o.d -o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/MultiFPBReader.cpp --- Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/all --- --- lib/libRDKitEigenSolvers.so.1.2023.03.2 --- [ 9%] Linking CXX shared library ../../../lib/libRDKitEigenSolvers.so cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1 ../../../lib/libRDKitEigenSolvers.so [ 10%] Built target EigenSolvers --- Code/Catalogs/CMakeFiles/Catalogs.dir/all --- --- lib/libRDKitCatalogs.so.1.2023.03.2 --- [ 11%] Linking CXX shared library ../../lib/libRDKitCatalogs.so cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitCatalogs.so.1 -o ../../lib/libRDKitCatalogs.so.1.2023.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../lib/libRDKitCatalogs.so.1 ../../lib/libRDKitCatalogs.so [ 11%] Built target Catalogs --- Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/all --- --- lib/libRDKitSimDivPickers.so.1.2023.03.2 --- [ 11%] Linking CXX shared library ../../lib/libRDKitSimDivPickers.so cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKithc.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../lib/libRDKitSimDivPickers.so.1 ../../lib/libRDKitSimDivPickers.so [ 11%] Built target SimDivPickers --- Code/DataStructs/CMakeFiles/DataStructs.dir/all --- --- lib/libRDKitDataStructs.so.1.2023.03.2 --- [ 11%] Linking CXX shared library ../../lib/libRDKitDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDataStructs.so.1 -o ../../lib/libRDKitDataStructs.so.1.2023.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1 ../../lib/libRDKitDataStructs.so [ 11%] Built target DataStructs --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- /usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry /construction/science/rdkit/.build/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/InfoTheory /construction/science/rdkit/.build/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- /usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o --- --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o --- [ 11%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- [ 11%] Building CXX object Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/Transform2D.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o --- [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DInfoTheory_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_INFOTHEORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -MF CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o.d -o CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory/InfoBitRanker.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/point.cpp.o -MF CMakeFiles/RDGeometryLib.dir/point.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/point.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/point.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o --- [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o --- [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o --- [ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o --- cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geo--- Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o --- cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -MF CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/GridUtils.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o --- metry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/Transform3D.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o --- cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDGeometryLib_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_RDGEOMETRYLIB_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -MF CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/UniformGrid3D.cpp --- Code/RDBoost/CMakeFiles/RDBoost.dir/all --- --- lib/libRDKitRDBoost.so.1.2023.03.2 --- [ 12%] Linking CXX shared library ../../lib/libRDKitRDBoost.so cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDBoost.so.1 -o ../../lib/libRDKitRDBoost.so.1.2023.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../lib/libRDKitRDBoost.so.1 ../../lib/libRDKitRDBoost.so [ 12%] Built target RDBoost --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- /usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- /usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend --- --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs/Wrap /construction/science/rdkit/.build/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend --- --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDBoost/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDBoost/Wrap /construction/science/rdkit/.build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/SimDivPickers/Wrap /construction/science/rdkit/.build/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- /usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o --- --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o --- --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o --- --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o --- --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- [ 12%] Building CXX object Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DClustering_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/Clustering.cpp.o -MF CMakeFiles/Clustering.dir/Clustering.cpp.o.d -o CMakeFiles/Clustering.dir/Clustering.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh/Clustering.cpp --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- [ 12%] Building CXX object Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- /usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o --- [ 12%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- cd /construction/science/rdkit/.build/Code/RDBoost/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdBase_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/RDBase.cpp.o -MF CMakeFiles/rdBase.dir/RDBase.cpp.o.d -o CMakeFiles/rdBase.dir/RDBase.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDBoost/Wrap/RDBase.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -MF CMakeFiles/cDataStructs.dir/DataStructs.cpp.o.d -o CMakeFiles/cDataStructs.dir/DataStructs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DataStructs.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o --- [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o --- [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o --- cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -MF CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/SparseIntVect.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -MF CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o.d -o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/DiscreteValueVect.cpp --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- [ 13%] Building CXX object Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- [ 13%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- cd /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMetricMatrixCalc_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -MF CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o.d -o CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap/rdMetricMatrixCalc.cpp --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap/MaxMinPicker.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o --- [ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_SparseBV.cpp --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o --- [ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap/LeaderPicker.cpp --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o --- [ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap/HierarchicalClusterPicker.cpp --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o --- [ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSimDivPickers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -MF CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o.d -o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap/rdSimDivPickers.cpp --- Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/all --- --- lib/libRDKitInfoTheory.so.1.2023.03.2 --- [ 14%] Linking CXX shared library ../../../lib/libRDKitInfoTheory.so cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../lib/libRDKitInfoTheory.so.1 ../../../lib/libRDKitInfoTheory.so [ 14%] Built target InfoTheory --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/all --- /usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake /usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o --- [ 14%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdInfoTheory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -MF CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/InfoBitRanker.cpp --- Code/Geometry/CMakeFiles/RDGeometryLib.dir/all --- --- lib/libRDKitRDGeometryLib.so.1.2023.03.2 --- [ 14%] Linking CXX shared library ../../lib/libRDKitRDGeometryLib.so cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1 ../../lib/libRDKitRDGeometryLib.so [ 14%] Built target RDGeometryLib --- Code/ML/Data/CMakeFiles/cQuantize.dir/all --- /usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend --- Code/ML/Data/CMakeFiles/cQuantize.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Data /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Data /construction/science/rdkit/.build/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake /usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build --- Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o --- [ 14%] Building CXX object Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o cd /construction/science/rdkit/.build/Code/ML/Data && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcQuantize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/Data/CMakeFiles/cQuantize.dir/cQuantize.cpp.o -MF CMakeFiles/cQuantize.dir/cQuantize.cpp.o.d -o CMakeFiles/cQuantize.dir/cQuantize.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Data/cQuantize.cpp --- Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all --- --- rdkit/ML/Cluster/Clustering.so --- [ 14%] Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/ML/Cluster/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKithc.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread [ 14%] Built target Clustering --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/all --- /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry/Wrap /construction/science/rdkit/.build/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o --- [ 14%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdGeometry_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/Point.cpp.o -MF CMakeFiles/rdGeometry.dir/Point.cpp.o.d -o CMakeFiles/rdGeometry.dir/Point.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/Wrap/Point.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o --- [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_ExplicitBV.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o --- [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_BitOps.cpp --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/all --- --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o --- [ 14%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdInfoTheory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -MF CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/BitCorrMatGenerator.cpp --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o --- [ 14%] Building CXX object Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdInfoTheory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -MF CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o.d -o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap/rdInfoTheory.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o --- [ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_FPB.cpp --- Code/ML/Data/CMakeFiles/cQuantize.dir/all --- --- rdkit/ML/Data/cQuantize.so --- [ 14%] Linking CXX shared module ../../../rdkit/ML/Data/cQuantize.so cd /construction/science/rdkit/.build/Code/ML/Data && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/ML/Data/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread [ 14%] Built target cQuantize --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o --- [ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_OPTIMIZE_POPCNT -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DcDataStructs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -MF CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o.d -o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap/wrap_Utils.cpp --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/all --- /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Alignment /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Alignment /construction/science/rdkit/.build/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o --- [ 15%] Building CXX object Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/libexec/ccache/c++ -DAlignment_EXPORTS -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ALIGNMENT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Alignment/CMakeFiles/Alignment.dir/AlignPoints.cpp.o -MF CMakeFiles/Alignment.dir/AlignPoints.cpp.o.d -o CMakeFiles/Alignment.dir/AlignPoints.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Alignment/AlignPoints.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- /usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend --- Code/GraphMol/CMakeFiles/GraphMol.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build --- Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o --- [ 15%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Atom.cpp.o -MF CMakeFiles/GraphMol.dir/Atom.cpp.o.d -o CMakeFiles/GraphMol.dir/Atom.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Atom.cpp --- Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all --- --- rdkit/DataManip/Metric/rdMetricMatrixCalc.so --- [ 16%] Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so cd /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 16%] Built target rdMetricMatrixCalc --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures /construction/science/rdkit/.build/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o --- [ 16%] Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemicalFeatures_EXPORTS -DRDKIT_CHEMICALFEATURES_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ChemicalFeatures/FreeChemicalFeature.cpp --- Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all --- --- rdkit/SimDivFilters/rdSimDivPickers.so --- [ 16%] Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/SimDivFilters/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKithc.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 16%] Built target rdSimDivPickers --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/all --- --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o --- [ 16%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdGeometry_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -MF CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o.d -o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/Wrap/UniformGrid3D.cpp --- Code/Numerics/Alignment/CMakeFiles/Alignment.dir/all --- --- lib/libRDKitAlignment.so.1.2023.03.2 --- [ 16%] Linking CXX shared library ../../../lib/libRDKitAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitAlignment.so.1 -o ../../../lib/libRDKitAlignment.so.1.2023.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1 ../../../lib/libRDKitAlignment.so [ 17%] Built target Alignment --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/all --- --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o --- [ 17%] Building CXX object Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdGeometry_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -MF CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o.d -o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/Wrap/rdGeometry.cpp --- Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/all --- --- lib/libRDKitChemicalFeatures.so.1.2023.03.2 --- [ 18%] Linking CXX shared library ../../lib/libRDKitChemicalFeatures.so cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../lib/libRDKitChemicalFeatures.so.1 ../../lib/libRDKitChemicalFeatures.so [ 18%] Built target ChemicalFeatures --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -MF CMakeFiles/GraphMol.dir/QueryAtom.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/QueryAtom.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryBond.cpp.o -MF CMakeFiles/GraphMol.dir/QueryBond.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryBond.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/QueryBond.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Bond.cpp.o -MF CMakeFiles/GraphMol.dir/Bond.cpp.o.d -o CMakeFiles/GraphMol.dir/Bond.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Bond.cpp --- Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/all --- --- rdkit/ML/InfoTheory/rdInfoTheory.so --- [ 19%] Linking CXX shared module ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/ML/InfoTheory/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 19%] Built target rdInfoTheory --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/all --- /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o --- [ 19%] Building CXX object Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdAlignment_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -MF CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o.d -o CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap/rdAlignment.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolOps.cpp.o -MF CMakeFiles/GraphMol.dir/MolOps.cpp.o.d -o CMakeFiles/GraphMol.dir/MolOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolOps.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindRings.cpp.o -MF CMakeFiles/GraphMol.dir/FindRings.cpp.o.d -o CMakeFiles/GraphMol.dir/FindRings.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FindRings.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ROMol.cpp.o -MF CMakeFiles/GraphMol.dir/ROMol.cpp.o.d -o CMakeFiles/GraphMol.dir/ROMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ROMol.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o --- [ 19%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RWMol.cpp.o -MF CMakeFiles/GraphMol.dir/RWMol.cpp.o.d -o CMakeFiles/GraphMol.dir/RWMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RWMol.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o --- [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -MF CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o.d -o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PeriodicTable.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o --- [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/atomic_data.cpp.o -MF CMakeFiles/GraphMol.dir/atomic_data.cpp.o.d -o CMakeFiles/GraphMol.dir/atomic_data.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/atomic_data.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o --- [ 20%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/QueryOps.cpp.o -MF CMakeFiles/GraphMol.dir/QueryOps.cpp.o.d -o CMakeFiles/GraphMol.dir/QueryOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/QueryOps.cpp --- Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/all --- --- rdkit/Geometry/rdGeometry.so --- [ 20%] Linking CXX shared module ../../../rdkit/Geometry/rdGeometry.so cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Geometry/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 21%] Built target rdGeometry --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o --- [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MolPickler.cpp.o -MF CMakeFiles/GraphMol.dir/MolPickler.cpp.o.d -o CMakeFiles/GraphMol.dir/MolPickler.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolPickler.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- --- rdkit/DataStructs/cDataStructs.so --- [ 21%] Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/link.txt --verbose=1 --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o --- --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/DataStructs/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Canon.cpp.o -MF CMakeFiles/GraphMol.dir/Canon.cpp.o.d -o CMakeFiles/GraphMol.dir/Canon.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Canon.cpp --- Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all --- [ 21%] Built target cDataStructs --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o --- [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -MF CMakeFiles/GraphMol.dir/AtomIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/AtomIterators.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o --- [ 21%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/BondIterators.cpp.o -MF CMakeFiles/GraphMol.dir/BondIterators.cpp.o.d -o CMakeFiles/GraphMol.dir/BondIterators.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/BondIterators.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o --- [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -MF CMakeFiles/GraphMol.dir/Aromaticity.cpp.o.d -o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Aromaticity.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o --- [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Kekulize.cpp.o -MF CMakeFiles/GraphMol.dir/Kekulize.cpp.o.d -o CMakeFiles/GraphMol.dir/Kekulize.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Kekulize.cpp --- Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all --- --- rdkit/rdBase.so --- [ 22%] Linking CXX shared module ../../../rdkit/rdBase.so cd /construction/science/rdkit/.build/Code/RDBoost/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread [ 22%] Built target rdBase --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o --- [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -MF CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o.d -o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ConjugHybrid.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o --- [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AddHs.cpp.o -MF CMakeFiles/GraphMol.dir/AddHs.cpp.o.d -o CMakeFiles/GraphMol.dir/AddHs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/AddHs.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o --- [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Matrices.cpp.o -MF CMakeFiles/GraphMol.dir/Matrices.cpp.o.d -o CMakeFiles/GraphMol.dir/Matrices.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Matrices.cpp --- Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/all --- --- rdkit/Numerics/rdAlignment.so --- [ 22%] Linking CXX shared module ../../../../rdkit/Numerics/rdAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Numerics/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 22%] Built target rdAlignment --- Code/GraphMol/CMakeFiles/GraphMol.dir/all --- --- Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o --- [ 22%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Chirality.cpp.o -MF CMakeFiles/GraphMol.dir/Chirality.cpp.o.d -o CMakeFiles/GraphMol.dir/Chirality.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Chirality.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/RingInfo.cpp.o -MF CMakeFiles/GraphMol.dir/RingInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/RingInfo.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RingInfo.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Conformer.cpp.o -MF CMakeFiles/GraphMol.dir/Conformer.cpp.o.d -o CMakeFiles/GraphMol.dir/Conformer.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Conformer.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Renumber.cpp.o -MF CMakeFiles/GraphMol.dir/Renumber.cpp.o.d -o CMakeFiles/GraphMol.dir/Renumber.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Renumber.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -MF CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o.d -o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/AdjustQuery.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/Resonance.cpp.o -MF CMakeFiles/GraphMol.dir/Resonance.cpp.o.d -o CMakeFiles/GraphMol.dir/Resonance.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Resonance.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -MF CMakeFiles/GraphMol.dir/StereoGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/StereoGroup.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o --- [ 23%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/new_canon.cpp.o -MF CMakeFiles/GraphMol.dir/new_canon.cpp.o.d -o CMakeFiles/GraphMol.dir/new_canon.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/new_canon.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o --- [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -MF CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstanceGroup.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o --- [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/FindStereo.cpp.o -MF CMakeFiles/GraphMol.dir/FindStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/FindStereo.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FindStereo.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o --- [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -MF CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o.d -o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MonomerInfo.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o --- [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -MF CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o.d -o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/NontetrahedralStereo.cpp --- Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o --- [ 24%] Building CXX object Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGraphMol_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GRAPHMOL_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -MF CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o.d -o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/WedgeBonds.cpp --- lib/libRDKitGraphMol.so.1.2023.03.2 --- [ 24%] Linking CXX shared library ../../lib/libRDKitGraphMol.so cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitGraphMol.so.1 -o ../../lib/libRDKitGraphMol.so.1.2023.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o CMakeFiles/GraphMol.dir/FindStereo.cpp.o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl -lpthread cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1 ../../lib/libRDKitGraphMol.so [ 25%] Built target GraphMol --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- /usr/bin/make -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/depend --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- /usr/bin/make -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/depend --- --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend --- --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/GenericGroups /construction/science/rdkit/.build/Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/DependInfo.cmake --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SmilesParse /construction/science/rdkit/.build/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Subgraphs /construction/science/rdkit/.build/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend --- --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolInterchange /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolInterchange /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolCatalog /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/DependInfo.cmake --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend --- --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/PartialCharges /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolTransforms /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend --- --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Trajectory /construction/science/rdkit/.build/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- /usr/bin/make -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend --- --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SLNParse /construction/science/rdkit/.build/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o --- --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- [ 25%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o --- [ 25%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o --- [ 26%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- [ 26%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogEntry.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdqueries_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/rdqueries.cpp.o -MF CMakeFiles/rdqueries.dir/rdqueries.cpp.o.d -o CMakeFiles/rdqueries.dir/rdqueries.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdqueries.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParse.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdqueries_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/Queries.cpp.o -MF CMakeFiles/rdqueries.dir/Queries.cpp.o.d -o CMakeFiles/rdqueries.dir/Queries.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Queries.cpp --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o --- --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o --- --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- [ 26%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- [ 26%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPMol.cpp --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- /usr/bin/make -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubgraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -MF CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o.d -o CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/Subgraphs.cpp --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- [ 26%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerCharges.cpp --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o --- --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- [ 26%] Building CXX object Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- [ 26%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_TRAJECTORY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DTrajectory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Cod--- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/rapidjson-1.1.0/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -W--- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- e/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/Trajectory.cpp.o -MF CMakeFiles/Trajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/Trajectory.dir/Trajectory.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory/Trajectory.cpp --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- all -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Parser.cpp.o -MF CMakeFiles/MolInterchange.dir/Parser.cpp.o.d -o CMakeFiles/MolInterchange.dir/Parser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolInterchange/Parser.cpp --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o --- --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o --- --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- [ 26%] Building CXX object Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- [ 27%] Building CXX object Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/GenericGroups && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DGenericGroups_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_GENERICGROUPS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -MF CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o.d -o CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups/GenericGroups.cpp --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolTransforms_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLTRANSFORMS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -MF CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o.d -o CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/MolTransforms.cpp --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- [ 28%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/rdChemicalFeatures.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- [ 28%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNParse.cpp.o -MF CMakeFiles/SLNParse.dir/SLNParse.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNParse.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNParse.cpp --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o --- [ 28%] Building CXX object Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -MF CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o.d -o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/MolCatalogParams.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o --- [ 28%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -MF CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o.d -o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/CIPLabeler.cpp --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o --- [ 28%] Building CXX object Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubgraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -MF CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o.d -o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs/SubgraphUtils.cpp --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o --- [ 28%] Building CXX object Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DPartialCharges_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_PARTIALCHARGES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -MF CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o.d -o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/GasteigerParams.cpp --- Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/all --- --- lib/libRDKitTrajectory.so.1.2023.03.2 --- [ 28%] Linking CXX shared library ../../../lib/libRDKitTrajectory.so cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitTrajectory.so.1 -o ../../../lib/libRDKitTrajectory.so.1.2023.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1 ../../../lib/libRDKitTrajectory.so [ 28%] Built target Trajectory --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o --- [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesParseOps.cpp --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o --- [ 28%] Building CXX object Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -MF CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o.d -o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap/FreeChemicalFeature.cpp --- Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/all --- --- lib/libRDKitMolCatalog.so.1.2023.03.2 --- [ 28%] Linking CXX shared library ../../../lib/libRDKitMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../lib/libRDKitMolCatalog.so.1 ../../../lib/libRDKitMolCatalog.so [ 28%] Built target MolCatalog --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o --- [ 28%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmilesWrite.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o --- [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -MF CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o.d -o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/SmartsWrite.cpp --- Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/all --- --- lib/libRDKitGenericGroups.so.1.2023.03.2 --- [ 29%] Linking CXX shared library ../../../lib/libRDKitGenericGroups.so cd /construction/science/rdkit/.build/Code/GraphMol/GenericGroups && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/GenericGroups && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1 ../../../lib/libRDKitGenericGroups.so [ 29%] Built target GenericGroups --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o --- [ 29%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -MF CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o.d -o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/CXSmilesOps.cpp --- Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/all --- --- lib/libRDKitMolTransforms.so.1.2023.03.2 --- [ 29%] Linking CXX shared library ../../../lib/libRDKitMolTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1 ../../../lib/libRDKitMolTransforms.so [ 29%] Built target MolTransforms --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/all --- /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Optimizer /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Optimizer /construction/science/rdkit/.build/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o --- [ 30%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -MF CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o.d -o CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/BFGSOpt.cpp --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o --- [ 30%] Building CXX object Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DOptimizer_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_OPTIMIZER_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -MF CMakeFiles/Optimizer.dir/LinearSearch.cpp.o.d -o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Optimizer/LinearSearch.cpp --- Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/all --- --- lib/libRDKitPartialCharges.so.1.2023.03.2 --- [ 30%] Linking CXX shared library ../../../lib/libRDKitPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1 ../../../lib/libRDKitPartialCharges.so [ 31%] Built target PartialCharges --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o --- [ 32%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -MF CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o.d -o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/SLNAttribs.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o --- [ 32%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/sln.tab.cpp.o -MF CMakeFiles/SLNParse.dir/sln.tab.cpp.o.d -o CMakeFiles/SLNParse.dir/sln.tab.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/sln.tab.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o --- [ 32%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -MF CMakeFiles/CIPLabeler.dir/Mancude.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Mancude.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o --- [ 32%] Building CXX object Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SLNPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -MF CMakeFiles/SLNParse.dir/lex.yysln.cpp.o.d -o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/lex.yysln.cpp --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o --- [ 32%] Building CXX object Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolInterchange_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLINTERCHANGE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/rapidjson-1.1.0/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/Writer.cpp.o -MF CMakeFiles/MolInterchange.dir/Writer.cpp.o.d -o CMakeFiles/MolInterchange.dir/Writer.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolInterchange/Writer.cpp --- Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/all --- --- lib/libRDKitOptimizer.so.1.2023.03.2 --- [ 32%] Linking CXX shared library ../../../lib/libRDKitOptimizer.so cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitOptimizer.so.1 -o ../../../lib/libRDKitOptimizer.so.1.2023.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1 ../../../lib/libRDKitOptimizer.so [ 32%] Built target Optimizer --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o --- [ 32%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdtrajectory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Trajectory.cpp --- Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/all --- --- lib/libRDKitSubgraphs.so.1.2023.03.2 --- [ 32%] Linking CXX shared library ../../../lib/libRDKitSubgraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1 ../../../lib/libRDKitSubgraphs.so [ 32%] Built target Subgraphs --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o --- [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smarts.tab.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- --- rdkit/Chem/rdqueries.so --- [ 32%] Linking CXX shared module ../../../rdkit/Chem/rdqueries.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Chem/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o --- [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -MF CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o.d -o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/smiles.tab.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/all --- [ 32%] Built target rdqueries --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o --- [ 32%] Building CXX object Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolCatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -MF CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o.d -o CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap/rdMolCatalog.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o --- [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmarts.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o --- [ 32%] Building CXX object Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SMILESPARSE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSmilesParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -MF CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o.d -o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse/lex.yysmiles.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o --- [ 32%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdtrajectory_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -MF CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o.d -o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdTrajectory.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o --- [ 32%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -MF CMakeFiles/CIPLabeler.dir/Digraph.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Digraph.cpp --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/all --- /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Substruct /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Substruct /construction/science/rdkit/.build/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o --- [ 32%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructMatch_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructMatch.cpp --- Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/all --- --- rdkit/Chem/rdChemicalFeatures.so --- [ 32%] Linking CXX shared module ../../../rdkit/Chem/rdChemicalFeatures.so cd /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Chem/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 32%] Built target rdChemicalFeatures --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o --- [ 32%] Building CXX object Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolTransforms_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -MF CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o.d -o CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap/rdMolTransforms.cpp --- Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/all --- --- lib/libRDKitSLNParse.so.1.2023.03.2 --- [ 32%] Linking CXX shared library ../../../lib/libRDKitSLNParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSLNParse.so.1 -o ../../../lib/libRDKitSLNParse.so.1.2023.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../lib/libRDKitSLNParse.so.1 ../../../lib/libRDKitSLNParse.so [ 32%] Built target SLNParse --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/all --- --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o --- [ 32%] Building CXX object Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTMATCH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructMatch_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -MF CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o.d -o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Substruct/SubstructUtils.cpp --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o --- [ 32%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DShapeHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeEncoder.cpp --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/all --- /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o --- [ 32%] Building CXX object Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdPartialCharges_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -MF CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o.d -o CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap/rdPartialCharges.cpp --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o --- [ 32%] Building CXX object Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SHAPEHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DShapeHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -MF CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o.d -o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/ShapeUtils.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- /usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend --- Code/ForceField/CMakeFiles/ForceField.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField /construction/science/rdkit/.build/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake /usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build --- Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o --- [ 32%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/ForceField.cpp.o -MF CMakeFiles/ForceField.dir/ForceField.cpp.o.d -o CMakeFiles/ForceField.dir/ForceField.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/ForceField.cpp --- Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/all --- --- lib/libRDKitSmilesParse.so.1.2023.03.2 --- [ 32%] Linking CXX shared library ../../../lib/libRDKitSmilesParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1 ../../../lib/libRDKitSmilesParse.so [ 33%] Built target SmilesParse --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o --- [ 33%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -MF CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleBend.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o --- [ 33%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Node.cpp.o -MF CMakeFiles/CIPLabeler.dir/Node.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Node.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Node.cpp --- Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/all --- --- lib/libRDKitMolInterchange.so.1.2023.03.2 --- [ 33%] Linking CXX shared library ../../../lib/libRDKitMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o ../../../lib/libRDKitMolInterchange.so.1.2023.03.2 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolInterchange.so.1.2023.03.2 ../../../lib/libRDKitMolInterchange.so.1 ../../../lib/libRDKitMolInterchange.so [ 33%] Built target MolInterchange --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o --- [ 33%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Edge.cpp.o -MF CMakeFiles/CIPLabeler.dir/Edge.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Edge.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Edge.cpp --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/all --- /usr/bin/make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o --- [ 33%] Building CXX object Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSLNParse_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -MF CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o.d -o CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap/rdSLNParse.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/all --- --- rdkit/Chem/rdtrajectory.so --- [ 33%] Linking CXX shared module ../../../rdkit/Chem/rdtrajectory.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Chem/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread [ 34%] Built target rdtrajectory --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o --- [ 34%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/BondStretch.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o --- [ 35%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/Sort.cpp.o -MF CMakeFiles/CIPLabeler.dir/Sort.cpp.o.d -o CMakeFiles/CIPLabeler.dir/Sort.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Sort.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o --- [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/Nonbonded.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o --- [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/Inversion.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o --- [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionAngle.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o --- [ 36%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Configuration.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o --- [ 36%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/DistanceConstraint.cpp --- Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/all --- --- rdkit/Chem/rdMolCatalog.so --- [ 36%] Linking CXX shared module ../../../../rdkit/Chem/rdMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 37%] Built target rdMolCatalog --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/all --- /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolInterchange/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o --- [ 37%] Building CXX object Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolInterchange_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/rapidjson-1.1.0/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -MF CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o.d -o CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolInterchange/Wrap/rdMolInterchange.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o --- --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- --- lib/libRDKitShapeHelpers.so.1.2023.03.2 --- --- Code/ForceField/CMakeFiles/ForceField.dir/all --- [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- [ 37%] Linking CXX shared library ../../../lib/libRDKitShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/link.txt --verbose=1 --- Code/ForceField/CMakeFiles/ForceField.dir/all --- cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/AngleConstraint.cpp --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/all --- --- lib/libRDKitSubstructMatch.so.1.2023.03.2 --- [ 37%] Linking CXX shared library ../../../lib/libRDKitSubstructMatch.so cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl --- Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../lib/libRDKitShapeHelpers.so.1 ../../../lib/libRDKitShapeHelpers.so [ 37%] Built target ShapeHelpers --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1 ../../../lib/libRDKitSubstructMatch.so --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/all --- --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o --- [ 37%] Building CXX object Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdShapeHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -MF CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o.d -o CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap/rdShapeHelpers.cpp --- Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/all --- [ 37%] Built target SubstructMatch --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o --- [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/TorsionConstraint.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o --- [ 37%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Sp2Bond.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o --- [ 37%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/PositionConstraint.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o --- [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/UFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/UFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/UFF/Params.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/UFF/Params.cpp --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/all --- --- rdkit/Chem/rdPartialCharges.so --- [ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o --- [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleBend.cpp --- Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/all --- [ 38%] Built target rdPartialCharges --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o --- [ 38%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/Filters.cpp.o -MF CMakeFiles/FilterCatalog.dir/Filters.cpp.o.d -o CMakeFiles/FilterCatalog.dir/Filters.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Filters.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o --- [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/BondStretch.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o --- [ 38%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/StretchBend.cpp --- Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/all --- --- rdkit/Chem/rdMolTransforms.so --- [ 38%] Linking CXX shared module ../../../../rdkit/Chem/rdMolTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 39%] Built target rdMolTransforms --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o --- [ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/OopBend.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o --- [ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionAngle.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o --- [ 39%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Nonbonded.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o --- [ 39%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -MF CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o.d -o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/configs/Tetrahedral.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o --- [ 39%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1a.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o --- [ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/DistanceConstraint.cpp --- Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/all --- --- rdkit/Chem/rdSLNParse.so --- [ 40%] Linking CXX shared module ../../../../rdkit/Chem/rdSLNParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 40%] Built target rdSLNParse --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o --- [ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/AngleConstraint.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o --- [ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/TorsionConstraint.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o --- [ 40%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule1b.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o --- [ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/PositionConstraint.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o --- [ 40%] Building CXX object Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceField_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELD_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -MF CMakeFiles/ForceField.dir/MMFF/Params.cpp.o.d -o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/MMFF/Params.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o --- [ 41%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule2.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o --- [ 41%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule3.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o --- [ 41%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalog.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o --- [ 41%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogEntry.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o --- [ 41%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4a.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o --- [ 41%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4b.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o --- [ 41%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterCatalogRunner.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o --- [ 41%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule4c.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o --- [ 41%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o --- [ 41%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -MF CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FilterMatchers.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o --- [ 42%] Building CXX object Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFilterCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILTERCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -MF CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o.d -o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/FunctionalGroupHierarchy.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o --- [ 42%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule5New.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o --- [ 43%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/Rule6.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o --- [ 43%] Building CXX object Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DCIPLabeler_EXPORTS -DRDKIT_CIPLABELER_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -MF CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o.d -o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/rules/SequenceRule.cpp --- Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/all --- --- rdkit/Chem/rdMolInterchange.so --- [ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolInterchange.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 44%] Built target rdMolInterchange --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FragCatalog /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o --- [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogUtils.cpp --- Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/all --- --- rdkit/Chem/rdShapeHelpers.so --- [ 44%] Linking CXX shared module ../../../../rdkit/Chem/rdShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 44%] Built target rdShapeHelpers --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o --- [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Fingerprints.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o --- [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/PatternFingerprints.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o --- [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MorganFingerprints.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o --- [ 44%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatGenerator.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o --- [ 44%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairs.cpp --- Code/ForceField/CMakeFiles/ForceField.dir/all --- --- lib/libRDKitForceField.so.1.2023.03.2 --- [ 44%] Linking CXX shared library ../../lib/libRDKitForceField.so cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitForceField.so.1 -o ../../lib/libRDKitForceField.so.1.2023.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1 ../../lib/libRDKitForceField.so [ 45%] Built target ForceField --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign /construction/science/rdkit/.build/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o --- [ 46%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -MF CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o.d -o CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/AlignMolecules.cpp --- Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/all --- --- lib/libRDKitCIPLabeler.so.1.2023.03.2 --- [ 46%] Linking CXX shared library ../../../lib/libRDKitCIPLabeler.so cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/CIPLabeler.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitCIPLabeler.so.1 -o ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o CMakeFiles/CIPLabeler.dir/Node.cpp.o CMakeFiles/CIPLabeler.dir/Edge.cpp.o CMakeFiles/CIPLabeler.dir/Sort.cpp.o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../lib/libRDKitCIPLabeler.so.1 ../../../lib/libRDKitCIPLabeler.so [ 46%] Built target CIPLabeler --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o --- [ 47%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeature.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o --- --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o --- [ 47%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatParams.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o --- [ 47%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -MF CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragCatalogEntry.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MACCS.cpp.o -MF CMakeFiles/Fingerprints.dir/MACCS.cpp.o.d -o CMakeFiles/Fingerprints.dir/MACCS.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MACCS.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o --- [ 48%] Building CXX object Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFragCatalog_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FRAGCATALOG_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/FragFPGenerator.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o --- [ 48%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o --- [ 48%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MHFP.cpp.o -MF CMakeFiles/Fingerprints.dir/MHFP.cpp.o.d -o CMakeFiles/Fingerprints.dir/MHFP.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MHFP.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o --- --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- --- lib/libRDKitFilterCatalog.so.1.2023.03.2 --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintGenerator.cpp --- Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/all --- [ 48%] Linking CXX shared library ../../../lib/libRDKitFilterCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1 ../../../lib/libRDKitFilterCatalog.so [ 48%] Built target FilterCatalog --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/AtomPairGenerator.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o --- [ 48%] Building CXX object Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolChemicalFeatures_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLCHEMICALFEATURES_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -MF CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o.d -o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/FeatureParser.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/MorganGenerator.cpp --- Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/all --- --- lib/libRDKitMolAlign.so.1.2023.03.2 --- [ 48%] Linking CXX shared library ../../../lib/libRDKitMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolAlign.so.1 -o ../../../lib/libRDKitMolAlign.so.1.2023.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1 ../../../lib/libRDKitMolAlign.so [ 48%] Built target MolAlign --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/all --- /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o --- [ 48%] Building CXX object Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_REDUCEDGRAPHS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DReducedGraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -MF CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o.d -o CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/ReducedGraphs.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/RDKitFPGenerator.cpp --- Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/all --- /usr/bin/make -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/depend --- Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Abbreviations /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build --- Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations && /usr/local/libexec/ccache/c++ -DAbbreviations_EXPORTS -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -MF CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o.d -o CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Abbreviations.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o --- [ 48%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -MF CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o.d -o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/FingerprintUtil.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o --- [ 49%] Building CXX object Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFingerprints_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FINGERPRINTS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -MF CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o.d -o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/TopologicalTorsionGenerator.cpp --- Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/all --- --- Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o --- [ 49%] Building CXX object Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations && /usr/local/libexec/ccache/c++ -DAbbreviations_EXPORTS -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_ABBREVIATIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -MF CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o.d -o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/AbbreviationsUtils.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o --- [ 49%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/AtomTyper.cpp --- Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/all --- /usr/bin/make -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/depend --- Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/Wrap /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build --- Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o --- [ 50%] Building CXX object Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdCIPLabeler_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -MF CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o.d -o CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap/rdCIPLabeler.cpp --- Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/all --- --- lib/libRDKitFragCatalog.so.1.2023.03.2 --- [ 51%] Linking CXX shared library ../../../lib/libRDKitFragCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../lib/libRDKitFragCatalog.so.1 ../../../lib/libRDKitFragCatalog.so [ 51%] Built target FragCatalog --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o --- [ 51%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfiltercatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap/rdfiltercatalog.cpp --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o --- [ 51%] Building CXX object Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfiltercatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -MF CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o.d -o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap/FilterCatalog.cpp --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/all --- /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/CoordGen/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen/Wrap /construction/science/rdkit/.build/External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/DependInfo.cmake /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o --- [ 51%] Building CXX object External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o cd /construction/science/rdkit/.build/External/CoordGen/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DIN_COORDGEN -DIN_MAEPARSER -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdCoordGen_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -MF CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o.d -o CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/External/CoordGen/Wrap/rdCoordGen.cpp --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Depictor /construction/science/rdkit/.build/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o --- [ 51%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/RDDepictor.cpp.o -MF CMakeFiles/Depictor.dir/RDDepictor.cpp.o.d -o CMakeFiles/Depictor.dir/RDDepictor.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/RDDepictor.cpp --- Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/all --- --- lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 --- [ 51%] Linking CXX shared library ../../../lib/libRDKitMolChemicalFeatures.so cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o ../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 ../../../lib/libRDKitMolChemicalFeatures.so.1 ../../../lib/libRDKitMolChemicalFeatures.so [ 51%] Built target MolChemicalFeatures --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o --- [ 51%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -MF CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o.d -o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/EmbeddedFrag.cpp --- Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/all --- --- lib/libRDKitReducedGraphs.so.1.2023.03.2 --- [ 51%] Linking CXX shared library ../../../lib/libRDKitReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o ../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 ../../../lib/libRDKitReducedGraphs.so.1 ../../../lib/libRDKitReducedGraphs.so [ 51%] Built target ReducedGraphs --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o --- [ 51%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DepictUtils.cpp.o -MF CMakeFiles/Depictor.dir/DepictUtils.cpp.o.d -o CMakeFiles/Depictor.dir/DepictUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/DepictUtils.cpp --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o --- [ 52%] Building CXX object Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDepictor_EXPORTS -DIN_COORDGEN -DRDKIT_DEPICTOR_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/Templates.cpp.o -MF CMakeFiles/Depictor.dir/Templates.cpp.o.d -o CMakeFiles/Depictor.dir/Templates.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Templates.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o --- [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/UFF/Builder.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o --- [ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/rdMolChemicalFeatures.cpp --- Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/all --- --- lib/libRDKitAbbreviations.so.1.2023.03.2 --- [ 52%] Linking CXX shared library ../../../lib/libRDKitAbbreviations.so cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Abbreviations.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitAbbreviations.so.1 -o ../../../lib/libRDKitAbbreviations.so.1.2023.03.2 CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitAbbreviations.so.1.2023.03.2 ../../../lib/libRDKitAbbreviations.so.1 ../../../lib/libRDKitAbbreviations.so [ 52%] Built target Abbreviations --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o --- [ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeature.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o --- [ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/MolChemicalFeatureFactory.cpp --- Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/all --- --- lib/libRDKitFingerprints.so.1.2023.03.2 --- [ 52%] Linking CXX shared library ../../../lib/libRDKitFingerprints.so cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFingerprints.so.1 -o ../../../lib/libRDKitFingerprints.so.1.2023.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1 ../../../lib/libRDKitFingerprints.so [ 52%] Built target Fingerprints --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o --- [ 52%] Building CXX object Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolChemicalFeatures_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -MF CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o.d -o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap/ChemicalFeatureUtils.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o --- [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o --- [ 52%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/MMFF/Builder.cpp --- Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/all --- --- rdkit/Chem/rdCIPLabeler.so --- [ 52%] Linking CXX shared module ../../../../rdkit/Chem/rdCIPLabeler.so cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdCIPLabeler.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdCIPLabeler.so CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 52%] Built target rdCIPLabeler --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/all --- /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o --- [ 53%] Building CXX object Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdReducedGraphs_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -MF CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o.d -o CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/Wrap/rdReducedGraphs.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o --- [ 53%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.cpp --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o --- [ 53%] Building CXX object Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DForceFieldHelpers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FORCEFIELDHELPERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -MF CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o.d -o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.cpp --- Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/all --- /usr/bin/make -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/depend --- Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/Wrap /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build --- Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o --- [ 53%] Building CXX object Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdAbbreviations_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -MF CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o.d -o CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Wrap/rdAbbreviations.cpp --- Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/all --- --- lib/libRDKitDepictor.so.1.2023.03.2 --- [ 53%] Linking CXX shared library ../../../lib/libRDKitDepictor.so cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDepictor.so.1 -o ../../../lib/libRDKitDepictor.so.1.2023.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o CMakeFiles/Depictor.dir/Templates.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolAlign.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1 ../../../lib/libRDKitDepictor.so [ 53%] Built target Depictor --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/all --- /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o --- [ 54%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdFingerprintGenerator_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -MF CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o.d -o CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/FingerprintGeneratorWrapper.cpp --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/all --- /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o --- [ 55%] Building CXX object Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMHFPFingerprint_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -MF CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o.d -o CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap/MHFPWrapper.cpp --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/all --- /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o --- [ 55%] Building CXX object Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DIN_COORDGEN -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDepictor_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -MF CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o.d -o CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap/rdDepictor.cpp --- External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/all --- --- rdkit/Chem/rdCoordGen.so --- [ 55%] Linking CXX shared module ../../../rdkit/Chem/rdCoordGen.so cd /construction/science/rdkit/.build/External/CoordGen/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Chem/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib:/construction/science/rdkit/.build/lib /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread [ 56%] Built target rdCoordGen --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o --- [ 56%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -MF CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o.d -o CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms/ChemTransforms.cpp --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o --- [ 56%] Building CXX object Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemTransforms_EXPORTS -DRDKIT_CHEMTRANSFORMS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -MF CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o.d -o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms/MolFragmenter.cpp --- Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/all --- --- rdkit/Chem/rdMolChemicalFeatures.so --- [ 56%] Linking CXX shared module ../../../../rdkit/Chem/rdMolChemicalFeatures.so cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 57%] Built target rdMolChemicalFeatures --- Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/all --- --- lib/libRDKitForceFieldHelpers.so.1.2023.03.2 --- [ 58%] Linking CXX shared library ../../../lib/libRDKitForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1 ../../../lib/libRDKitForceFieldHelpers.so [ 58%] Built target ForceFieldHelpers --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/all --- --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend --- --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend --- --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DistGeom /construction/science/rdkit/.build/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/all --- --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend --- --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField/Wrap /construction/science/rdkit/.build/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign /construction/science/rdkit/.build/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o --- --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o --- --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o --- --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- [ 59%] Building CXX object Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdForceFieldHelpers_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -MF CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o.d -o CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap/rdForceFields.cpp --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o --- [ 59%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o --- Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o --- [ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o --- Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o --- cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -MF CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom/DistGeomUtils.cpp --- Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o --- cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -MF CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o.d -o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom/TriangleSmooth.cpp --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o --- [ 60%] Building CXX object Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DO3AAlign_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLALIGN_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -MF CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o.d -o CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/O3AAlignMolecules.cpp --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- [ 60%] Building CXX object Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o cd /construction/science/rdkit/.build/Code/ForceField/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdForceField_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/ForceField.cpp.o -MF CMakeFiles/rdForceField.dir/ForceField.cpp.o.d -o CMakeFiles/rdForceField.dir/ForceField.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/Wrap/ForceField.cpp --- Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/all --- --- rdkit/Chem/rdReducedGraphs.so --- [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 60%] Built target rdReducedGraphs --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o --- [ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -MF CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o.d -o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom/DistViolationContrib.cpp --- Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o --- [ 60%] Building CXX object Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeometry_EXPORTS -DRDKIT_DISTGEOMETRY_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -MF CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o.d -o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom/ChiralViolationContrib.cpp --- Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/all --- --- rdkit/Chem/rdDepictor.so --- [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdDepictor.so cd /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 60%] Built target rdDepictor --- Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/all --- --- rdkit/Chem/rdAbbreviations.so --- [ 60%] Linking CXX shared module ../../../../rdkit/Chem/rdAbbreviations.so cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdAbbreviations.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdAbbreviations.so CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitAbbreviations.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 61%] Built target rdAbbreviations --- Code/DistGeom/CMakeFiles/DistGeometry.dir/all --- --- lib/libRDKitDistGeometry.so.1.2023.03.2 --- [ 61%] Linking CXX shared library ../../lib/libRDKitDistGeometry.so cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o ../../lib/libRDKitDistGeometry.so.1.2023.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../lib/libRDKitDistGeometry.so.1 ../../lib/libRDKitDistGeometry.so [ 61%] Built target DistGeometry --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DistGeom/Wrap /construction/science/rdkit/.build/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o --- --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- [ 61%] Building CXX object Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o --- [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o --- [ 61%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- cd /construction/science/rdkit/.build/Code/DistGeom/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeom_EXPORTS -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DistGeom.cpp.o -MF CMakeFiles/DistGeom.dir/DistGeom.cpp.o.d -o CMakeFiles/DistGeom.dir/DistGeom.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom/Wrap/DistGeom.cpp --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Embedder.cpp --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/EmbedderUtils.cpp --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o --- [ 62%] Building CXX object Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDistGeomHelpers_EXPORTS -DRDKIT_DISTGEOMHELPERS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -MF CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o.d -o CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.cpp --- Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/all --- --- rdkit/Chem/rdfiltercatalog.so --- [ 62%] Linking CXX shared module ../../../../rdkit/Chem/rdfiltercatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 62%] Built target rdfiltercatalog --- Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/all --- --- lib/libRDKitChemTransforms.so.1.2023.03.2 --- [ 62%] Linking CXX shared library ../../../lib/libRDKitChemTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1 ../../../lib/libRDKitChemTransforms.so [ 62%] Built target ChemTransforms --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o --- [ 62%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Atom.cpp.o -MF CMakeFiles/rdchem.dir/Atom.cpp.o.d -o CMakeFiles/rdchem.dir/Atom.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Atom.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o --- [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o --- [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Table.cpp.o -MF CMakeFiles/rdchem.dir/Table.cpp.o.d -o CMakeFiles/rdchem.dir/Table.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Table.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/rdchem.cpp.o -MF CMakeFiles/rdchem.dir/rdchem.cpp.o.d -o CMakeFiles/rdchem.dir/rdchem.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdchem.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -MF CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o.d -o CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CDXMLParser.cpp --- Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/all --- --- lib/libRDKitO3AAlign.so.1.2023.03.2 --- [ 63%] Linking CXX shared library ../../../lib/libRDKitO3AAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o ../../../lib/libRDKitO3AAlign.so.1.2023.03.2 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitO3AAlign.so.1.2023.03.2 ../../../lib/libRDKitO3AAlign.so.1 ../../../lib/libRDKitO3AAlign.so [ 63%] Built target O3AAlign --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o --- [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Bond.cpp.o -MF CMakeFiles/rdchem.dir/Bond.cpp.o.d -o CMakeFiles/rdchem.dir/Bond.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Bond.cpp --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/all --- --- rdkit/Chem/rdMHFPFingerprint.so --- [ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdMHFPFingerprint.so cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 63%] Built target rdMHFPFingerprint --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -MF CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/Mol2FileParser.cpp --- Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/all --- --- rdkit/Chem/rdFingerprintGenerator.so --- [ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdFingerprintGenerator.so cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 63%] Built target rdFingerprintGenerator --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileParser.cpp --- Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/all --- --- rdkit/Chem/rdForceFieldHelpers.so --- [ 63%] Linking CXX shared module ../../../../rdkit/Chem/rdForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 63%] Built target rdForceFieldHelpers --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupParsing.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -MF CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o.d -o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolSGroupWriting.cpp --- Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/all --- --- rdkit/DistanceGeometry/DistGeom.so --- [ 63%] Linking CXX shared module ../../../rdkit/DistanceGeometry/DistGeom.so cd /construction/science/rdkit/.build/Code/DistGeom/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/DistanceGeometry/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 63%] Built target DistGeom --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o --- [ 63%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Mol.cpp.o -MF CMakeFiles/rdchem.dir/Mol.cpp.o.d -o CMakeFiles/rdchem.dir/Mol.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Mol.cpp --- Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/all --- --- rdkit/ForceField/rdForceField.so --- [ 63%] Linking CXX shared module ../../../rdkit/ForceField/rdForceField.so cd /construction/science/rdkit/.build/Code/ForceField/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/ForceField/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 63%] Built target rdForceField --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o --- [ 63%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileStereochem.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MolFileWriter.cpp --- Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/all --- --- lib/libRDKitDistGeomHelpers.so.1.2023.03.2 --- [ 64%] Linking CXX shared library ../../../lib/libRDKitDistGeomHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o ../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../lib/libRDKitDistGeomHelpers.so.1 ../../../lib/libRDKitDistGeomHelpers.so [ 64%] Built target DistGeomHelpers --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/ForwardSDMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o --- [ 64%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Conformer.cpp.o -MF CMakeFiles/rdchem.dir/Conformer.cpp.o.d -o CMakeFiles/rdchem.dir/Conformer.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Conformer.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SDWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SDWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SDWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SDWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SmilesMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -MF CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SmilesWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o --- [ 64%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TDTMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o --- [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TDTWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TDTWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o --- [ 65%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TplFileParser.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o --- [ 65%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/RingInfo.cpp.o -MF CMakeFiles/rdchem.dir/RingInfo.cpp.o.d -o CMakeFiles/rdchem.dir/RingInfo.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/RingInfo.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o --- [ 65%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/EditableMol.cpp.o -MF CMakeFiles/rdchem.dir/EditableMol.cpp.o.d -o CMakeFiles/rdchem.dir/EditableMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/EditableMol.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o --- [ 66%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -MF CMakeFiles/rdchem.dir/MonomerInfo.cpp.o.d -o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MonomerInfo.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o --- [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/TplFileWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o --- [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBParser.cpp.o -MF CMakeFiles/FileParsers.dir/PDBParser.cpp.o.d -o CMakeFiles/FileParsers.dir/PDBParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/PDBParser.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o --- [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -MF CMakeFiles/FileParsers.dir/PDBWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/PDBWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o --- [ 66%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/PDBSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o --- [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -MF CMakeFiles/FileParsers.dir/CMLWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/CMLWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o --- [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -MF CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/XYZFileWriter.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o --- [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -MF CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o.d -o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/XYZFileParser.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o --- [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MaeMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o --- [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MaeWriter.cpp.o -MF CMakeFiles/FileParsers.dir/MaeWriter.cpp.o.d -o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MaeWriter.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o --- [ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -MF CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o.d -o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/ResonanceMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o --- [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -MF CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o.d -o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/ProximityBonds.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o --- [ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/MolBundle.cpp.o -MF CMakeFiles/rdchem.dir/MolBundle.cpp.o.d -o CMakeFiles/rdchem.dir/MolBundle.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MolBundle.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o --- [ 67%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SequenceParsers.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o --- [ 67%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/StereoGroup.cpp.o -MF CMakeFiles/rdchem.dir/StereoGroup.cpp.o.d -o CMakeFiles/rdchem.dir/StereoGroup.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/StereoGroup.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o --- [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -MF CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o.d -o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SequenceWriters.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o --- [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- [ 68%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-al--- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/r--- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- iasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/SVGParser.cpp.o -MF CMakeFiles/FileParsers.dir/SVGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/SVGParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/SVGParser.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- dchem.dir/SubstanceGroup.cpp.o -MF CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o.d -o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SubstanceGroup.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o --- [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/PNGParser.cpp.o -MF CMakeFiles/FileParsers.dir/PNGParser.cpp.o.d -o CMakeFiles/FileParsers.dir/PNGParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/PNGParser.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o --- [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MultithreadedMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o --- [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o --- [ 68%] Building CXX object Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/libexec/ccache/c++ -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_SERIALIZATION_DYN_LINK -DFileParsers_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FILEPARSERS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_IOSTREAMS -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers/MultithreadedSDMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o --- [ 68%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdchem_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/Chirality.cpp.o -MF CMakeFiles/rdchem.dir/Chirality.cpp.o.d -o CMakeFiles/rdchem.dir/Chirality.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/Chirality.cpp --- Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/all --- --- lib/libRDKitFileParsers.so.1.2023.03.2 --- [ 68%] Linking CXX shared library ../../../lib/libRDKitFileParsers.so cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFileParsers.so.1 -o ../../../lib/libRDKitFileParsers.so.1.2023.03.2 CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o CMakeFiles/FileParsers.dir/PNGParser.cpp.o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1 ../../../lib/libRDKitFileParsers.so [ 69%] Built target FileParsers --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend --- --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS /construction/science/rdkit/.build/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend --- --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MMPA /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MMPA /construction/science/rdkit/.build/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o --- [ 69%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o --- [ 69%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o --- [ 70%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MaeMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -MF CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o.d -o CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdmolfiles.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/ForwardSDMolSupplier.cpp --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o --- [ 70%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatParams.cpp --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o --- [ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatalog.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o --- --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o --- --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- [ 71%] Building CXX object Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_PYTHON_MAX_ARITY=32 -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDistGeom_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -MF CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o.d -o CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap/rdDistGeom.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- [ 71%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Crippen.cpp.o -MF CMakeFiles/Descriptors.dir/Crippen.cpp.o.d -o CMakeFiles/Descriptors.dir/Crippen.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Crippen.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o --- [ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o --- [ 71%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pi--- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pi--- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- [ 71%] Building CXX object Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o --- pe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -MF CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/rdfragcatalog.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o --- pe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragCatGenerator.cpp --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMMPA_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MMPA_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/MMPA.cpp.o -MF CMakeFiles/MMPA.dir/MMPA.cpp.o.d -o CMakeFiles/MMPA.dir/MMPA.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/MMPA.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- [ 71%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/FMCS.cpp.o -MF CMakeFiles/FMCS.dir/FMCS.cpp.o.d -o CMakeFiles/FMCS.dir/FMCS.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/FMCS.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o --- [ 71%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MaeWriter.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/all --- --- rdkit/Chem/rdchem.so --- [ 71%] Linking CXX shared module ../../../rdkit/Chem/rdchem.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Chem/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o CMakeFiles/rdchem.dir/Chirality.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 72%] Built target rdchem --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o --- [ 72%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/Seed.cpp.o -MF CMakeFiles/FMCS.dir/Seed.cpp.o.d -o CMakeFiles/FMCS.dir/Seed.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Seed.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o --- [ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/BCUT.cpp.o -MF CMakeFiles/Descriptors.dir/BCUT.cpp.o.d -o CMakeFiles/Descriptors.dir/BCUT.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/BCUT.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o --- [ 73%] Building CXX object Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdfragcatalog_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -MF CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o.d -o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap/FragFPGenerator.cpp --- Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/all --- --- lib/libRDKitMMPA.so.1.2023.03.2 --- [ 73%] Linking CXX shared library ../../../lib/libRDKitMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMMPA.so.1 -o ../../../lib/libRDKitMMPA.so.1.2023.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/lib/libz.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMMPA.so.1.2023.03.2 ../../../lib/libRDKitMMPA.so.1 ../../../lib/libRDKitMMPA.so [ 73%] Built target MMPA --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/all --- /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o --- [ 73%] Building CXX object Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMMPA_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -MF CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o.d -o CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap/rdMMPA.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o --- [ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -MF CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o.d -o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/MaximumCommonSubgraph.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o --- [ 73%] Building CXX object Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DFMCS_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_FMCS_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -MF CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o.d -o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/SubstructMatchCustom.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o --- [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SDMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o --- [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/TDTMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o --- [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o --- [ 73%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SmilesWriter.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o --- [ 73%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MolDescriptors.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o --- [ 74%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/SDWriter.cpp --- Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/all --- --- rdkit/Chem/rdfragcatalog.so --- [ 74%] Linking CXX shared module ../../../../rdkit/Chem/rdfragcatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 74%] Built target rdfragcatalog --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o --- [ 74%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/TDTWriter.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o --- [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolSurf.cpp.o -MF CMakeFiles/Descriptors.dir/MolSurf.cpp.o.d -o CMakeFiles/Descriptors.dir/MolSurf.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MolSurf.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o --- [ 74%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Lipinski.cpp.o -MF CMakeFiles/Descriptors.dir/Lipinski.cpp.o.d -o CMakeFiles/Descriptors.dir/Lipinski.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Lipinski.cpp --- Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/all --- --- rdkit/Chem/rdMMPA.so --- [ 74%] Linking CXX shared module ../../../../rdkit/Chem/rdMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMMPA.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 74%] Built target rdMMPA --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o --- [ 74%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -MF CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o.d -o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/PDBWriter.cpp --- Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/all --- --- lib/libRDKitFMCS.so.1.2023.03.2 --- [ 74%] Linking CXX shared library ../../../lib/libRDKitFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFMCS.so.1 -o ../../../lib/libRDKitFMCS.so.1.2023.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/lib/libz.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFMCS.so.1 ../../../lib/libRDKitFMCS.so [ 75%] Built target FMCS --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/all --- /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o --- [ 75%] Building CXX object Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdFMCS_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -MF CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o.d -o CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap/rdFMCS.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o --- [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/ConnectivityDescriptors.cpp --- Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/all --- --- rdkit/Chem/rdDistGeom.so --- [ 75%] Linking CXX shared module ../../../../rdkit/Chem/rdDistGeom.so cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 75%] Built target rdDistGeom --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o --- [ 75%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecomp.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o --- [ 75%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MultithreadedSmilesMolSupplier.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o --- [ 75%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolfiles_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -MF CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o.d -o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MultithreadedSDMolSupplier.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o --- [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MQN.cpp.o -MF CMakeFiles/Descriptors.dir/MQN.cpp.o.d -o CMakeFiles/Descriptors.dir/MQN.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MQN.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o --- [ 75%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Property.cpp.o -MF CMakeFiles/Descriptors.dir/Property.cpp.o.d -o CMakeFiles/Descriptors.dir/Property.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Property.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o --- [ 75%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecompData.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o --- [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -MF CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o.d -o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/AUTOCORR2D.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o --- [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Data3Ddescriptors.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o --- [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -MF CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o.d -o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MolData3Ddescriptors.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o --- [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -MF CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o.d -o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/USRDescriptor.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o --- [ 76%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupData.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o --- [ 76%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AtomFeat.cpp.o -MF CMakeFiles/Descriptors.dir/AtomFeat.cpp.o.d -o CMakeFiles/Descriptors.dir/AtomFeat.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/AtomFeat.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o --- [ 76%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupUtils.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o --- [ 77%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupCore.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o --- [ 77%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -MF CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o.d -o CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/OxidationNumbers.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o --- [ 77%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupDecompParams.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o --- [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/EEM.cpp.o -MF CMakeFiles/Descriptors.dir/EEM.cpp.o.d -o CMakeFiles/Descriptors.dir/EEM.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/EEM.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o --- [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PBF.cpp.o -MF CMakeFiles/Descriptors.dir/PBF.cpp.o.d -o CMakeFiles/Descriptors.dir/PBF.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/PBF.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o --- [ 78%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupScore.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o --- [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/PMI.cpp.o -MF CMakeFiles/Descriptors.dir/PMI.cpp.o.d -o CMakeFiles/Descriptors.dir/PMI.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/PMI.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o --- [ 78%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupFingerprintScore.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- --- rdkit/Chem/rdmolfiles.so --- [ 78%] Linking CXX shared module ../../../rdkit/Chem/rdmolfiles.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Chem/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o --- [ 78%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -MF CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o.d -o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/AUTOCORR3D.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/all --- [ 79%] Built target rdmolfiles --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o --- [ 79%] Building CXX object Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_RGROUPDECOMPOSITION_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -MF CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o.d -o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/RGroupGa.cpp --- Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/all --- --- rdkit/Chem/rdFMCS.so --- [ 79%] Linking CXX shared module ../../../../rdkit/Chem/rdFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 79%] Built target rdFMCS --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o --- [ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/RDF.cpp.o -MF CMakeFiles/Descriptors.dir/RDF.cpp.o.d -o CMakeFiles/Descriptors.dir/RDF.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/RDF.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o --- --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o --- [ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -MF CMakeFiles/Descriptors.dir/GETAWAY.cpp.o.d -o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/GETAWAY.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o --- [ 79%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/MORSE.cpp.o -MF CMakeFiles/Descriptors.dir/MORSE.cpp.o.d -o CMakeFiles/Descriptors.dir/MORSE.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/MORSE.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o --- [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/WHIM.cpp.o -MF CMakeFiles/Descriptors.dir/WHIM.cpp.o.d -o CMakeFiles/Descriptors.dir/WHIM.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/WHIM.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o --- [ 80%] Building CXX object Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDescriptors_EXPORTS -DRDKIT_DESCRIPTORS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -MF CMakeFiles/Descriptors.dir/CoulombMat.cpp.o.d -o CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/CoulombMat.cpp --- Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/all --- --- lib/libRDKitRGroupDecomposition.so.1.2023.03.2 --- [ 80%] Linking CXX shared library ../../../lib/libRDKitRGroupDecomposition.so cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o ../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitga.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 ../../../lib/libRDKitRGroupDecomposition.so.1 ../../../lib/libRDKitRGroupDecomposition.so [ 81%] Built target RGroupDecomposition --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/all --- /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o --- [ 81%] Building CXX object Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdRGroupDecomposition_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -MF CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o.d -o CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap/rdRGroupComposition.cpp --- Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/all --- --- lib/libRDKitDescriptors.so.1.2023.03.2 --- [ 81%] Linking CXX shared library ../../../lib/libRDKitDescriptors.so cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDescriptors.so.1 -o ../../../lib/libRDKitDescriptors.so.1.2023.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/BCUT.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/AtomFeat.cpp.o CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o CMakeFiles/Descriptors.dir/EEM.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1 ../../../lib/libRDKitDescriptors.so [ 81%] Built target Descriptors --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolHash /construction/science/rdkit/.build/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- /usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o --- --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o --- --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o --- [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o --- [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o --- [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o --- [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o --- -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MDLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/MDLParser.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o --- -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionUtils.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -MF CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/DaylightParser.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o --- [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- [ 81%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Reaction.cpp.o -MF CMakeFiles/ChemReactions.dir/Reaction.cpp.o.d -o CMakeFiles/ChemReactions.dir/Reaction.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Reaction.cpp --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o --- --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o --- --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/normalize.cpp.o -MF CMakeFiles/MolHash.dir/normalize.cpp.o.d -o CMakeFiles/MolHash.dir/normalize.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/normalize.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o --- [ 81%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionPickler.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o --- [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionWriter.cpp --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o --- [ 82%] Building CXX object Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolHash_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLHASH_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/hashfunctions.cpp.o -MF CMakeFiles/MolHash.dir/hashfunctions.cpp.o.d -o CMakeFiles/MolHash.dir/hashfunctions.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/hashfunctions.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionDepict.cpp --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- [ 82%] Building CXX object Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolDescriptors_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -MF CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o.d -o CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap/rdMolDescriptors.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o --- [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionFingerprints.cpp --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- [ 82%] Building CXX object Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolAlign_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -MF CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o.d -o CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/Wrap/rdMolAlign.cpp --- Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/all --- --- rdkit/Chem/rdRGroupDecomposition.so --- [ 82%] Linking CXX shared module ../../../../rdkit/Chem/rdRGroupDecomposition.so cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitga.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 82%] Built target rdRGroupDecomposition --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o --- [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -MF CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/MoleculeParser.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o --- [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -MF CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o.d -o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/ReactionRunner.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o --- [ 82%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/PreprocessRxn.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o --- [ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -MF CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o.d -o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/SanitizeRxn.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o --- [ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -MF CMakeFiles/ChemReactions.dir/PNGParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/PNGParser.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o --- [ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -MF CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o.d -o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/CDXMLParser.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o --- [ 83%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Enumerate/Enumerate.cpp --- Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/all --- --- lib/libRDKitMolHash.so.1.2023.03.2 --- [ 84%] Linking CXX shared library ../../../lib/libRDKitMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolHash.so.1 -o ../../../lib/libRDKitMolHash.so.1.2023.03.2 CMakeFiles/MolHash.dir/hashfunctions.cpp.o CMakeFiles/MolHash.dir/normalize.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../lib/libRDKitMolHash.so.1 ../../../lib/libRDKitMolHash.so [ 84%] Built target MolHash --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/all --- /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o --- [ 84%] Building CXX object Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolHash_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -MF CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o.d -o CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap/rdMolHash.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o --- [ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Enumerate/EnumerationPickler.cpp --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o --- [ 84%] Building CXX object Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DChemReactions_EXPORTS -DRDKIT_CHEMREACTIONS_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -MF CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o.d -o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Enumerate/EvenSamplePairs.cpp --- Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/all --- --- rdkit/Chem/rdMolAlign.so --- [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitO3AAlign.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 84%] Built target rdMolAlign --- Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/all --- --- rdkit/Chem/rdMolHash.so --- [ 84%] Linking CXX shared module ../../../../rdkit/Chem/rdMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 84%] Built target rdMolHash --- Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/all --- --- lib/libRDKitChemReactions.so.1.2023.03.2 --- [ 84%] Linking CXX shared library ../../../lib/libRDKitChemReactions.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitChemReactions.so.1 -o ../../../lib/libRDKitChemReactions.so.1.2023.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1 ../../../lib/libRDKitChemReactions.so [ 85%] Built target ChemReactions --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- /usr/bin/make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- /usr/bin/make -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/depend --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- /usr/bin/make -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/depend --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/depend --- --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/depend --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/DependInfo.cmake --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend --- --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Deprotect /construction/science/rdkit/.build/Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/DependInfo.cmake --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolStandardize /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- /usr/bin/make -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- /usr/bin/make -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- /usr/bin/make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- [ 85%] Building CXX object Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o --- [ 85%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DDeprotect_EXPORTS -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/Deprotect.cpp.o -MF CMakeFiles/Deprotect.dir/Deprotect.cpp.o.d -o CMakeFiles/Deprotect.dir/Deprotect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/Deprotect.cpp --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemReactions_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -MF CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o.d -o CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/Enumerate.cpp --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o --- [ 85%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -MF CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o.d -o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/LinkNode.cpp --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o --- [ 85%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -MF CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o.d -o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/RepeatUnit.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o --- [ 85%] Building CXX object Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o --- [ 86%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdChemReactions_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -MF CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o.d -o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap/rdChemReactions.cpp --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -MF CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o.d -o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/PositionVariation.cpp --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o --- [ 86%] Building CXX object Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolEnumerator_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLENUMERATOR_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -MF CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o.d -o CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/MolEnumerator.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/MolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/MolStandardize.dir/Normalize.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Normalize.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- [ 86%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o --- [ 86%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o --- [ 87%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolops_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/rdmolops.cpp.o -MF CMakeFiles/rdmolops.dir/rdmolops.cpp.o.d -o CMakeFiles/rdmolops.dir/rdmolops.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/rdmolops.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -MF CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o.d -o CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/MolStandardize.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Metal.cpp.o -MF CMakeFiles/MolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/MolStandardize.dir/Metal.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Metal.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2D.cpp --- Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/all --- --- lib/libRDKitDeprotect.so.1.2023.03.2 --- [ 88%] Linking CXX shared library ../../../lib/libRDKitDeprotect.so cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Deprotect.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDeprotect.so.1 -o ../../../lib/libRDKitDeprotect.so.1.2023.03.2 CMakeFiles/Deprotect.dir/Deprotect.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 /usr/lib/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitDeprotect.so.1.2023.03.2 ../../../lib/libRDKitDeprotect.so.1 ../../../lib/libRDKitDeprotect.so [ 88%] Built target Deprotect --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o --- [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Validate.cpp.o -MF CMakeFiles/MolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/MolStandardize.dir/Validate.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Validate.cpp --- Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/all --- /usr/bin/make -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/depend --- Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build --- Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o --- [ 88%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDeprotect_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -MF CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o.d -o CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/Wrap/rdDeprotect.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o --- [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Charge.cpp.o -MF CMakeFiles/MolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/MolStandardize.dir/Charge.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Charge.cpp --- Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/all --- --- rdkit/Chem/rdMolDescriptors.so --- [ 88%] Linking CXX shared module ../../../../rdkit/Chem/rdMolDescriptors.so cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 88%] Built target rdMolDescriptors --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o --- [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/MolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Tautomer.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o --- [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DSVG.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o --- --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- --- lib/libRDKitMolEnumerator.so.1.2023.03.2 --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- [ 88%] Linking CXX shared library ../../../lib/libRDKitMolEnumerator.so cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/link.txt --verbose=1 --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DDetails.cpp --- Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/all --- /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o ../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 ../../../lib/libRDKitMolEnumerator.so.1 ../../../lib/libRDKitMolEnumerator.so [ 88%] Built target MolEnumerator --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o --- [ 88%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DUtils.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o --- [ 88%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolops_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/MolOps.cpp.o -MF CMakeFiles/rdmolops.dir/MolOps.cpp.o.d -o CMakeFiles/rdmolops.dir/MolOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/MolOps.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o --- [ 88%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/MolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/MolStandardize.dir/Fragment.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Fragment.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -MF CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/AtomSymbol.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.cpp --- Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/all --- --- Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o --- [ 89%] Building CXX object Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DEPROTECT_BUILD -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdDeprotect_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -MF CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o.d -o CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/Wrap/DeprotectWrap.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawAnnotation.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o --- [ 89%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMol.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o --- [ 90%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawMolMCH.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o --- [ 90%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawShape.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o --- [ 90%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawText.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawText.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawTextNotFT.cpp --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolStandardize_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLSTANDARDIZE_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -MF CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o.d -o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o --- [ 91%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawTextSVG.cpp --- Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/all --- /usr/bin/make -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/depend --- Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build --- Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o --- [ 92%] Building CXX object Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolEnumerator_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -MF CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o.d -o CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap/rdMolEnumerator.cpp --- Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/all --- --- rdkit/Chem/rdChemReactions.so --- [ 92%] Linking CXX shared module ../../../../rdkit/Chem/rdChemReactions.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 92%] Built target rdChemReactions --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o --- [ 92%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o -MF CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o.d -o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/MolDraw2DJS.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o --- [ 92%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawTextJS.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o --- [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawTextFT.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o --- [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawTextFTSVG.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o --- [ 93%] Building CXX object Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DMolDraw2D_EXPORTS -DRDKIT_DYN_LINK -DRDKIT_MOLDRAW2D_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -MF CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o.d -o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/DrawTextFTJS.cpp --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o --- [ 93%] Building CXX object Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -Drdmolops_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -MF CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o.d -o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap/ChiralityOps.cpp --- Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/all --- --- rdkit/Chem/rdDeprotect.so --- [ 93%] Linking CXX shared module ../../../../rdkit/Chem/rdDeprotect.so cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDeprotect.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdDeprotect.so CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitDeprotect.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 94%] Built target rdDeprotect --- Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/all --- --- lib/libRDKitMolStandardize.so.1.2023.03.2 --- [ 94%] Linking CXX shared library ../../../lib/libRDKitMolStandardize.so cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1 ../../../lib/libRDKitMolStandardize.so [ 94%] Built target MolStandardize --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/all --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/all --- /usr/bin/make -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/depend --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- /usr/bin/make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/depend --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/all --- --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/DependInfo.cmake --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend --- --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/depend --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/DependInfo.cmake --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/all --- /usr/bin/make -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- /usr/bin/make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/all --- [ 95%] Building CXX object Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o --- --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_TAUTOMERQUERY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DTautomerQuery_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -MF CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o.d -o CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/TautomerQuery.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o --- [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- [ 95%] Building CXX object Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o --- [ 95%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Validate.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Validate.cpp --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SCAFFOLDNETWORK_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DScaffoldNetwork_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -MF CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o.d -o CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/ScaffoldNetwork.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o --- [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Charge.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Charge.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o --- [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Normalize.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o --- cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -MF CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/rdMolStandardize.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o --- [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Fragment.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o --- [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Metal.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Metal.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o --- [ 96%] Building CXX object Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolStandardize_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -MF CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o.d -o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap/Tautomer.cpp --- Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/all --- --- lib/libRDKitMolDraw2D.so.1.2023.03.2 --- [ 96%] Linking CXX shared library ../../../lib/libRDKitMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 /usr/local/lib/libfreetype.so ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../lib/libRDKitMolDraw2D.so.1 ../../../lib/libRDKitMolDraw2D.so [ 96%] Built target MolDraw2D --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/all --- /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o --- [ 96%] Building CXX object Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_FREETYPE_SUPPORT -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdMolDraw2D_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/freetype2 -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -MF CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o.d -o CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap/rdMolDraw2D.cpp --- Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/all --- --- rdkit/Chem/rdMolEnumerator.so --- [ 96%] Linking CXX shared module ../../../../rdkit/Chem/rdMolEnumerator.so cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdMolEnumerator.so CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 96%] Built target rdMolEnumerator --- Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/all --- --- rdkit/Chem/rdmolops.so --- [ 96%] Linking CXX shared module ../../../rdkit/Chem/rdmolops.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../rdkit/Chem/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 96%] Built target rdmolops --- Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/all --- --- lib/libRDKitScaffoldNetwork.so.1.2023.03.2 --- [ 96%] Linking CXX shared library ../../../lib/libRDKitScaffoldNetwork.so cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o ../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../lib/libRDKitScaffoldNetwork.so.1 ../../../lib/libRDKitScaffoldNetwork.so [ 97%] Built target ScaffoldNetwork --- Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/all --- /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend --- Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/Wrap /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build --- Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o --- [ 98%] Building CXX object Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdScaffoldNetwork_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -MF CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o.d -o CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap/rdScaffoldNetwork.cpp --- Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/all --- --- lib/libRDKitTautomerQuery.so.1.2023.03.2 --- [ 98%] Linking CXX shared library ../../../lib/libRDKitTautomerQuery.so cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/TautomerQuery.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitTautomerQuery.so.1 -o ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitTautomerQuery.so.1 ../../../lib/libRDKitTautomerQuery.so [ 98%] Built target TautomerQuery --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- /usr/bin/make -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/depend --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/Wrap /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/DependInfo.cmake --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- /usr/bin/make -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o --- --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o --- --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o --- --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- [ 98%] Building CXX object Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdTautomerQuery_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -MF CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o.d -o CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap/rdTautomerQuery.cpp --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructLibrary_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -MF CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/PatternFactory.cpp --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o --- [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDKIT_SUBSTRUCTLIBRARY_BUILD -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DSubstructLibrary_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/usr/local/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -MF CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o.d -o CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/SubstructLibrary.cpp --- Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/all --- --- rdkit/Chem/MolStandardize/rdMolStandardize.so --- [ 99%] Linking CXX shared module ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/MolStandardize/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 99%] Built target rdMolStandardize --- Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/all --- --- rdkit/Chem/Scaffolds/rdScaffoldNetwork.so --- [ 99%] Linking CXX shared module ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/Scaffolds/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 99%] Built target rdScaffoldNetwork --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- --- rdkit/Chem/rdTautomerQuery.so --- --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- --- lib/libRDKitSubstructLibrary.so.1.2023.03.2 --- --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- [ 99%] Linking CXX shared module ../../../../rdkit/Chem/rdTautomerQuery.so cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdTautomerQuery.dir/link.txt --verbose=1 --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- [ 99%] Linking CXX shared library ../../../lib/libRDKitSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/link.txt --verbose=1 --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdTautomerQuery.so CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libboost_serialization.so --- Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/all --- [ 99%] Built target rdTautomerQuery --- Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/all --- cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_symlink_library ../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../lib/libRDKitSubstructLibrary.so.1 ../../../lib/libRDKitSubstructLibrary.so [ 99%] Built target SubstructLibrary --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/all --- /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend --- cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o --- --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o --- [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSubstructLibrary_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/SubstructLibraryWrap.cpp --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o --- [ 99%] Building CXX object Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/libexec/ccache/c++ -DBOOST_SERIALIZATION_DYN_LINK -DRDKIT_DYN_LINK -DRDK_64BIT_BUILD -DRDK_BUILD_COORDGEN_SUPPORT -DRDK_BUILD_DESCRIPTORS3D -DRDK_BUILD_MAEPARSER_SUPPORT -DRDK_BUILD_THREADSAFE_SSS -DRDK_HAS_EIGEN3 -DRDK_TEST_MULTITHREADED -DRDK_USE_BOOST_SERIALIZATION -DRDK_USE_STRICT_ROTOR_DEFINITION -DRDK_USE_URF -DrdSubstructLibrary_EXPORTS -I/construction/science/rdkit/rdkit-Release_2023_03_2/External -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies/RingDecomposerLib/src/RingDecomposerLib -I/usr/local/include/python3.9 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/construction/science/rdkit/rdkit-Release_2023_03_2/Code -I/construction/science/rdkit/rdkit-Release_2023_03_2/External/boost-numeric-bindings -isystem /usr/local/include -isystem /usr/local/include/eigen3 -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -std=gnu++17 -fPIC -pthread -MD -MT Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -MF CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o.d -o CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o -c /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap/rdSubstructLibrary.cpp --- Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/all --- --- rdkit/Chem/Draw/rdMolDraw2D.so --- [ 99%] Linking CXX shared module ../../../../rdkit/Chem/Draw/rdMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/Draw/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libfreetype.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [ 99%] Built target rdMolDraw2D --- Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/all --- --- rdkit/Chem/rdSubstructLibrary.so --- [100%] Linking CXX shared module ../../../../rdkit/Chem/rdSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o ../../../../rdkit/Chem/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-z,origin,-rpath,/construction/science/rdkit/.build/lib:/usr/local/lib ../../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl [100%] Built target rdSubstructLibrary /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles 0 SUCCEEDED 00:11:05 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> rdkit-2023.03.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> rdkit-2023.03.2 depends on package: py39-pillow>=7.0.0 - found ===> rdkit-2023.03.2 depends on package: py39-matplotlib>0 - found ===> rdkit-2023.03.2 depends on package: py39-reportlab>0 - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for rdkit-2023.03.2 ===> rdkit-2023.03.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> rdkit-2023.03.2 depends on package: py39-pillow>=7.0.0 - found ===> rdkit-2023.03.2 depends on package: py39-matplotlib>0 - found ===> rdkit-2023.03.2 depends on package: py39-reportlab>0 - found ===> rdkit-2023.03.2 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/science/rdkit/rdkit-Release_2023_03_2 -B/construction/science/rdkit/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles /construction/science/rdkit/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/catch /construction/science/rdkit/.build /construction/science/rdkit/.build/External/catch /construction/science/rdkit/.build/External/catch/CMakeFiles/catch.dir/DependInfo.cmake /usr/bin/make -f External/catch/CMakeFiles/catch.dir/build.make External/catch/CMakeFiles/catch.dir/build [ 0%] Built target catch /usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/INCHI-API /construction/science/rdkit/.build /construction/science/rdkit/.build/External/INCHI-API /construction/science/rdkit/.build/External/INCHI-API/CMakeFiles/inchi_support.dir/DependInfo.cmake /usr/bin/make -f External/INCHI-API/CMakeFiles/inchi_support.dir/build.make External/INCHI-API/CMakeFiles/inchi_support.dir/build cd /construction/science/rdkit/.build/External/INCHI-API && /usr/local/bin/cmake -E copy /construction/science/rdkit/rdkit-Release_2023_03_2/External/INCHI-API/python/noinchi.py /construction/science/rdkit/rdkit-Release_2023_03_2/rdkit/Chem/inchi.py [ 0%] Built target inchi_support /usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/CoordGen /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen /construction/science/rdkit/.build/External/CoordGen/CMakeFiles/coordgen_support.dir/DependInfo.cmake /usr/bin/make -f External/CoordGen/CMakeFiles/coordgen_support.dir/build.make External/CoordGen/CMakeFiles/coordgen_support.dir/build [ 0%] Built target coordgen_support /usr/bin/make -f External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/build.make External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies /construction/science/rdkit/.build /construction/science/rdkit/.build/External/RingFamilies /construction/science/rdkit/.build/External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/DependInfo.cmake /usr/bin/make -f External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/build.make External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/build [ 2%] Built target RingDecomposerLib /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDGeneral /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDGeneral /construction/science/rdkit/.build/Code/RDGeneral/CMakeFiles/RDGeneral.dir/DependInfo.cmake /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/build [ 3%] Built target RDGeneral /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDBoost /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDBoost /construction/science/rdkit/.build/Code/RDBoost/CMakeFiles/RDBoost.dir/DependInfo.cmake /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/build [ 3%] Built target RDBoost /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs /construction/science/rdkit/.build/Code/DataStructs/CMakeFiles/DataStructs.dir/DependInfo.cmake /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/build [ 5%] Built target DataStructs /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry /construction/science/rdkit/.build/Code/Geometry/CMakeFiles/RDGeometryLib.dir/DependInfo.cmake /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/build [ 6%] Built target RDGeometryLib /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Alignment /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Alignment /construction/science/rdkit/.build/Code/Numerics/Alignment/CMakeFiles/Alignment.dir/DependInfo.cmake /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build [ 7%] Built target Alignment /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/EigenSolvers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/EigenSolvers /construction/science/rdkit/.build/Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/DependInfo.cmake /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build [ 8%] Built target EigenSolvers /usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol /construction/science/rdkit/.build/Code/GraphMol/CMakeFiles/GraphMol.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/build [ 14%] Built target GraphMol /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SmilesParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SmilesParse /construction/science/rdkit/.build/Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build [ 16%] Built target SmilesParse /usr/bin/make -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/GenericGroups /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/GenericGroups /construction/science/rdkit/.build/Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build [ 16%] Built target GenericGroups /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Substruct /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Substruct /construction/science/rdkit/.build/Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build [ 16%] Built target SubstructMatch /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolTransforms /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build [ 17%] Built target MolTransforms /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign /construction/science/rdkit/.build/Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build [ 18%] Built target MolAlign /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/CoordGen/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/External/CoordGen/Wrap /construction/science/rdkit/.build/External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/DependInfo.cmake /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build [ 19%] Built target rdCoordGen /usr/bin/make -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/RingFamilies /construction/science/rdkit/.build /construction/science/rdkit/.build/External/RingFamilies /construction/science/rdkit/.build/External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/DependInfo.cmake /usr/bin/make -f External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build.make External/RingFamilies/CMakeFiles/ringdecomposerlib_support.dir/build [ 19%] Built target ringdecomposerlib_support /usr/bin/make -f External/GA/CMakeFiles/ga.dir/build.make External/GA/CMakeFiles/ga.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/External/GA /construction/science/rdkit/.build /construction/science/rdkit/.build/External/GA /construction/science/rdkit/.build/External/GA/CMakeFiles/ga.dir/DependInfo.cmake /usr/bin/make -f External/GA/CMakeFiles/ga.dir/build.make External/GA/CMakeFiles/ga.dir/build [ 20%] Built target ga /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDBoost/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDBoost/Wrap /construction/science/rdkit/.build/Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/DependInfo.cmake /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build [ 20%] Built target rdBase /usr/bin/make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/RDStreams /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/RDStreams /construction/science/rdkit/.build/Code/RDStreams/CMakeFiles/RDStreams.dir/DependInfo.cmake /usr/bin/make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/build [ 21%] Built target RDStreams /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataStructs/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataStructs/Wrap /construction/science/rdkit/.build/Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DependInfo.cmake /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build [ 23%] Built target cDataStructs /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Geometry/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Geometry/Wrap /construction/science/rdkit/.build/Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/DependInfo.cmake /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build [ 24%] Built target rdGeometry /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Alignment/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/DependInfo.cmake /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build [ 24%] Built target rdAlignment /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Trajectory /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Trajectory /construction/science/rdkit/.build/Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build [ 24%] Built target Trajectory /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Numerics/Optimizer /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Numerics/Optimizer /construction/science/rdkit/.build/Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/DependInfo.cmake /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build [ 25%] Built target Optimizer /usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField /construction/science/rdkit/.build/Code/ForceField/CMakeFiles/ForceField.dir/DependInfo.cmake /usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/build [ 29%] Built target ForceField /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build [ 30%] Built target ForceFieldHelpers /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ForceField/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ForceField/Wrap /construction/science/rdkit/.build/Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/DependInfo.cmake /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build [ 30%] Built target rdForceField /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DistGeom /construction/science/rdkit/.build/Code/DistGeom/CMakeFiles/DistGeometry.dir/DependInfo.cmake /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/build [ 31%] Built target DistGeometry /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DistGeom/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DistGeom/Wrap /construction/science/rdkit/.build/Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/DependInfo.cmake /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build [ 31%] Built target DistGeom /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/Catalogs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/Catalogs /construction/science/rdkit/.build/Code/Catalogs/CMakeFiles/Catalogs.dir/DependInfo.cmake /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/build [ 32%] Built target Catalogs /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Depictor /construction/science/rdkit/.build/Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build [ 33%] Built target Depictor /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Depictor/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build [ 33%] Built target rdDepictor /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build [ 33%] Built target ChemTransforms /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FileParsers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FileParsers /construction/science/rdkit/.build/Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build [ 38%] Built target FileParsers /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Subgraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Subgraphs /construction/science/rdkit/.build/Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build [ 38%] Built target Subgraphs /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build [ 39%] Built target FilterCatalog /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/PartialCharges /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build [ 40%] Built target PartialCharges /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors /construction/science/rdkit/.build/Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build [ 44%] Built target Descriptors /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build [ 46%] Built target Fingerprints /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build [ 49%] Built target ChemReactions /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ChemReactions/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build [ 49%] Built target rdChemReactions /usr/bin/make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolStandardize /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build [ 52%] Built target MolStandardize /usr/bin/make -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build [ 53%] Built target TautomerQuery /usr/bin/make -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/TautomerQuery/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/Wrap /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build [ 53%] Built target rdTautomerQuery /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FilterCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build [ 53%] Built target rdfiltercatalog /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FragCatalog /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build [ 54%] Built target FragCatalog /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FragCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build [ 55%] Built target rdfragcatalog /usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Descriptors/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build [ 55%] Built target rdMolDescriptors /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build [ 56%] Built target rdFingerprintGenerator /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build [ 57%] Built target rdMHFPFingerprint /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/PartialCharges/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build [ 57%] Built target rdPartialCharges /usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolTransforms/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build [ 58%] Built target rdMolTransforms /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ForceFieldHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build [ 59%] Built target rdForceFieldHelpers /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build [ 60%] Built target DistGeomHelpers /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/DistGeomHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build [ 60%] Built target rdDistGeom /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign /construction/science/rdkit/.build/Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build [ 60%] Built target O3AAlign /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolAlign/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build [ 60%] Built target rdMolAlign /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build [ 61%] Built target MolChemicalFeatures /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolChemicalFeatures/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build [ 62%] Built target rdMolChemicalFeatures /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build [ 62%] Built target ShapeHelpers /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ShapeHelpers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build [ 62%] Built target rdShapeHelpers /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolCatalog /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build [ 62%] Built target MolCatalog /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolCatalog/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build [ 63%] Built target rdMolCatalog /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build [ 66%] Built target MolDraw2D /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolDraw2D/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build [ 66%] Built target rdMolDraw2D /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS /construction/science/rdkit/.build/Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build [ 67%] Built target FMCS /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/FMCS/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build [ 67%] Built target rdFMCS /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolHash /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolHash /construction/science/rdkit/.build/Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build [ 68%] Built target MolHash /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolHash/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build [ 68%] Built target rdMolHash /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MMPA /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MMPA /construction/science/rdkit/.build/Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build [ 68%] Built target MMPA /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MMPA/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build [ 68%] Built target rdMMPA /usr/bin/make -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build [ 71%] Built target CIPLabeler /usr/bin/make -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/CIPLabeler/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/Wrap /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build [ 72%] Built target rdCIPLabeler /usr/bin/make -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Deprotect /construction/science/rdkit/.build/Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build [ 72%] Built target Deprotect /usr/bin/make -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Deprotect/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build [ 73%] Built target rdDeprotect /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build [ 73%] Built target ReducedGraphs /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ReducedGraphs/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build [ 74%] Built target rdReducedGraphs /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build [ 75%] Built target SubstructLibrary /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SubstructLibrary/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build [ 76%] Built target rdSubstructLibrary /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build [ 78%] Built target RGroupDecomposition /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/RGroupDecomposition/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build [ 78%] Built target rdRGroupDecomposition /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolInterchange /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolInterchange /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build [ 78%] Built target MolInterchange /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolInterchange/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build [ 79%] Built target rdMolInterchange /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SLNParse /construction/science/rdkit/.build/Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build [ 80%] Built target SLNParse /usr/bin/make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/SLNParse/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build [ 80%] Built target rdSLNParse /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build [ 83%] Built target rdchem /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build [ 83%] Built target rdmolops /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build [ 84%] Built target rdqueries /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build [ 87%] Built target rdmolfiles /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Wrap /construction/science/rdkit/.build/Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build [ 88%] Built target rdtrajectory /usr/bin/make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolStandardize/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build [ 89%] Built target rdMolStandardize /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build [ 90%] Built target ScaffoldNetwork /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/ScaffoldNetwork/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/Wrap /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build [ 91%] Built target rdScaffoldNetwork /usr/bin/make -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build [ 92%] Built target MolEnumerator /usr/bin/make -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/MolEnumerator/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/Wrap /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build [ 93%] Built target rdMolEnumerator /usr/bin/make -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Abbreviations /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build [ 93%] Built target Abbreviations /usr/bin/make -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/GraphMol/Abbreviations/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/Wrap /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/DependInfo.cmake /usr/bin/make -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build [ 94%] Built target rdAbbreviations /usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/DataManip/MetricMatrixCalc/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/DependInfo.cmake /usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build [ 95%] Built target rdMetricMatrixCalc /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/DependInfo.cmake /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build [ 96%] Built target hc /usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/SimDivPickers /construction/science/rdkit/.build/Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DependInfo.cmake /usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build [ 97%] Built target SimDivPickers /usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/SimDivPickers/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/SimDivPickers/Wrap /construction/science/rdkit/.build/Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/DependInfo.cmake /usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build [ 98%] Built target rdSimDivPickers /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/DependInfo.cmake /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build [ 98%] Built target Clustering /usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/InfoTheory /construction/science/rdkit/.build/Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/DependInfo.cmake /usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build [ 98%] Built target InfoTheory /usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/InfoTheory/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/DependInfo.cmake /usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build [ 98%] Built target rdInfoTheory /usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ML/Data /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ML/Data /construction/science/rdkit/.build/Code/ML/Data/CMakeFiles/cQuantize.dir/DependInfo.cmake /usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/build [ 98%] Built target cQuantize /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ChemicalFeatures /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures /construction/science/rdkit/.build/Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build [ 99%] Built target ChemicalFeatures /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/depend cd /construction/science/rdkit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/rdkit/rdkit-Release_2023_03_2 /construction/science/rdkit/rdkit-Release_2023_03_2/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/DependInfo.cmake /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build [100%] Built target rdChemicalFeatures /usr/local/bin/cmake -E cmake_progress_start /construction/science/rdkit/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall /usr/bin/make -f External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/build.make External/CoordGen/Wrap/CMakeFiles/rdCoordGen.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdCoordGen.so cd /construction/science/rdkit/.build/External/CoordGen/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdCoordGen.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdCoordGen.so CMakeFiles/rdCoordGen.dir/rdCoordGen.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/bin/make -f External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/build.make External/RingFamilies/CMakeFiles/RingDecomposerLib.dir/preinstall Linking C shared library CMakeFiles/CMakeRelink.dir/libRDKitRingDecomposerLib.so cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RingDecomposerLib.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/cc -fPIC -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRingDecomposerLib.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRingDecomposerLib.so.1.2023.03.2 CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLapsp.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLbitset.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLcycleFams.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLdimacs.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLgraph.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLhandler.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLinfo.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLrelation.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLstack.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtarjan.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLtesting.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RDLutility.c.o CMakeFiles/RingDecomposerLib.dir/RingDecomposerLib/src/RingDecomposerLib/RingDecomposerLib.c.o -lpthread cd /construction/science/rdkit/.build/External/RingFamilies && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRingDecomposerLib.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRingDecomposerLib.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRingDecomposerLib.so /usr/bin/make -f External/GA/CMakeFiles/ga.dir/build.make External/GA/CMakeFiles/ga.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitga.so cd /construction/science/rdkit/.build/External/GA && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ga.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitga.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitga.so.1.2023.03.2 CMakeFiles/ga.dir/ga/StringChromosome.cpp.o CMakeFiles/ga.dir/ga/Chromosome.cpp.o CMakeFiles/ga.dir/ga/IntegerStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/ga/BinaryStringChromosomePolicy.cpp.o CMakeFiles/ga.dir/util/RandomUtil.cpp.o CMakeFiles/ga.dir/util/Util.cpp.o -lpthread cd /construction/science/rdkit/.build/External/GA && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitga.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitga.so.1 CMakeFiles/CMakeRelink.dir/libRDKitga.so /usr/bin/make -f Code/RDGeneral/CMakeFiles/RDGeneral.dir/build.make Code/RDGeneral/CMakeFiles/RDGeneral.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeneral.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDGeneral.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so.1.2023.03.2 CMakeFiles/RDGeneral.dir/Invariant.cpp.o CMakeFiles/RDGeneral.dir/types.cpp.o CMakeFiles/RDGeneral.dir/utils.cpp.o CMakeFiles/RDGeneral.dir/RDGeneralExceptions.cpp.o CMakeFiles/RDGeneral.dir/RDLog.cpp.o CMakeFiles/RDGeneral.dir/LocaleSwitcher.cpp.o CMakeFiles/RDGeneral.dir/versions.cpp.o -ldl -lpthread cd /construction/science/rdkit/.build/Code/RDGeneral && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRDGeneral.so /usr/bin/make -f Code/RDBoost/CMakeFiles/RDBoost.dir/build.make Code/RDBoost/CMakeFiles/RDBoost.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDBoost.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDBoost.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so.1.2023.03.2 CMakeFiles/RDBoost.dir/Wrap.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so cd /construction/science/rdkit/.build/Code/RDBoost && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRDBoost.so /usr/bin/make -f Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/build.make Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdBase.so cd /construction/science/rdkit/.build/Code/RDBoost/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdBase.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdBase.so CMakeFiles/rdBase.dir/RDBase.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/bin/make -f Code/RDStreams/CMakeFiles/RDStreams.dir/build.make Code/RDStreams/CMakeFiles/RDStreams.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRDStreams.so cd /construction/science/rdkit/.build/Code/RDStreams && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDStreams.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDStreams.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRDStreams.so.1.2023.03.2 CMakeFiles/RDStreams.dir/streams.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib /usr/local/lib/libboost_iostreams.so -lpthread /usr/local/lib/libboost_regex.so cd /construction/science/rdkit/.build/Code/RDStreams && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRDStreams.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRDStreams.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRDStreams.so /usr/bin/make -f Code/DataStructs/CMakeFiles/DataStructs.dir/build.make Code/DataStructs/CMakeFiles/DataStructs.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DataStructs.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDataStructs.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so.1.2023.03.2 CMakeFiles/DataStructs.dir/BitVect.cpp.o CMakeFiles/DataStructs.dir/SparseBitVect.cpp.o CMakeFiles/DataStructs.dir/ExplicitBitVect.cpp.o CMakeFiles/DataStructs.dir/Utils.cpp.o CMakeFiles/DataStructs.dir/base64.cpp.o CMakeFiles/DataStructs.dir/BitOps.cpp.o CMakeFiles/DataStructs.dir/DiscreteDistMat.cpp.o CMakeFiles/DataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/DataStructs.dir/FPBReader.cpp.o CMakeFiles/DataStructs.dir/MultiFPBReader.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/DataStructs && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDataStructs.so /usr/bin/make -f Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/build.make Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/cDataStructs.so cd /construction/science/rdkit/.build/Code/DataStructs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cDataStructs.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/cDataStructs.so CMakeFiles/cDataStructs.dir/DataStructs.cpp.o CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o CMakeFiles/cDataStructs.dir/wrap_FPB.cpp.o CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/Geometry/CMakeFiles/RDGeometryLib.dir/build.make Code/Geometry/CMakeFiles/RDGeometryLib.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RDGeometryLib.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRDGeometryLib.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so.1.2023.03.2 CMakeFiles/RDGeometryLib.dir/point.cpp.o CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Geometry && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRDGeometryLib.so /usr/bin/make -f Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/build.make Code/Geometry/Wrap/CMakeFiles/rdGeometry.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdGeometry.so cd /construction/science/rdkit/.build/Code/Geometry/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdGeometry.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdGeometry.so CMakeFiles/rdGeometry.dir/Point.cpp.o CMakeFiles/rdGeometry.dir/UniformGrid3D.cpp.o CMakeFiles/rdGeometry.dir/rdGeometry.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/Numerics/Alignment/CMakeFiles/Alignment.dir/build.make Code/Numerics/Alignment/CMakeFiles/Alignment.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Alignment.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitAlignment.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so.1.2023.03.2 CMakeFiles/Alignment.dir/AlignPoints.cpp.o ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Numerics/Alignment && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so.1 CMakeFiles/CMakeRelink.dir/libRDKitAlignment.so /usr/bin/make -f Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/build.make Code/Numerics/Alignment/Wrap/CMakeFiles/rdAlignment.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdAlignment.so cd /construction/science/rdkit/.build/Code/Numerics/Alignment/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdAlignment.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdAlignment.so CMakeFiles/rdAlignment.dir/rdAlignment.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/build.make Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/EigenSolvers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitEigenSolvers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so.1.2023.03.2 CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Numerics/EigenSolvers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitEigenSolvers.so /usr/bin/make -f Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/build.make Code/Numerics/Optimizer/CMakeFiles/Optimizer.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitOptimizer.so cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Optimizer.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitOptimizer.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitOptimizer.so.1.2023.03.2 CMakeFiles/Optimizer.dir/BFGSOpt.cpp.o CMakeFiles/Optimizer.dir/LinearSearch.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/Numerics/Optimizer && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitOptimizer.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitOptimizer.so.1 CMakeFiles/CMakeRelink.dir/libRDKitOptimizer.so /usr/bin/make -f Code/ForceField/CMakeFiles/ForceField.dir/build.make Code/ForceField/CMakeFiles/ForceField.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitForceField.so cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ForceField.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitForceField.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitForceField.so.1.2023.03.2 CMakeFiles/ForceField.dir/ForceField.cpp.o CMakeFiles/ForceField.dir/UFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/UFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/UFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/UFF/Inversion.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/UFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/UFF/Params.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleBend.cpp.o CMakeFiles/ForceField.dir/MMFF/BondStretch.cpp.o CMakeFiles/ForceField.dir/MMFF/StretchBend.cpp.o CMakeFiles/ForceField.dir/MMFF/OopBend.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionAngle.cpp.o CMakeFiles/ForceField.dir/MMFF/Nonbonded.cpp.o CMakeFiles/ForceField.dir/MMFF/DistanceConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/AngleConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/TorsionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/PositionConstraint.cpp.o CMakeFiles/ForceField.dir/MMFF/Params.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/ForceField && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitForceField.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitForceField.so.1 CMakeFiles/CMakeRelink.dir/libRDKitForceField.so /usr/bin/make -f Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/build.make Code/ForceField/Wrap/CMakeFiles/rdForceField.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdForceField.so cd /construction/science/rdkit/.build/Code/ForceField/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceField.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdForceField.so CMakeFiles/rdForceField.dir/ForceField.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/DistGeom/CMakeFiles/DistGeometry.dir/build.make Code/DistGeom/CMakeFiles/DistGeometry.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeometry.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDistGeometry.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so.1.2023.03.2 CMakeFiles/DistGeometry.dir/DistGeomUtils.cpp.o CMakeFiles/DistGeometry.dir/TriangleSmooth.cpp.o CMakeFiles/DistGeometry.dir/DistViolationContrib.cpp.o CMakeFiles/DistGeometry.dir/ChiralViolationContrib.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../lib/libRDKitForceField.so.1.2023.03.2 ../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/DistGeom && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDistGeometry.so /usr/bin/make -f Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/build.make Code/DistGeom/Wrap/CMakeFiles/DistGeom.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/DistGeom.so cd /construction/science/rdkit/.build/Code/DistGeom/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeom.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/DistGeom.so CMakeFiles/DistGeom.dir/DistGeom.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/Catalogs/CMakeFiles/Catalogs.dir/build.make Code/Catalogs/CMakeFiles/Catalogs.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitCatalogs.so cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Catalogs.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitCatalogs.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitCatalogs.so.1.2023.03.2 CMakeFiles/Catalogs.dir/Catalog.cpp.o CMakeFiles/Catalogs.dir/CatalogParams.cpp.o CMakeFiles/Catalogs.dir/CatalogEntry.cpp.o ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/Catalogs && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitCatalogs.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitCatalogs.so.1 CMakeFiles/CMakeRelink.dir/libRDKitCatalogs.so /usr/bin/make -f Code/GraphMol/CMakeFiles/GraphMol.dir/build.make Code/GraphMol/CMakeFiles/GraphMol.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/GraphMol.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitGraphMol.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so.1.2023.03.2 CMakeFiles/GraphMol.dir/Atom.cpp.o CMakeFiles/GraphMol.dir/QueryAtom.cpp.o CMakeFiles/GraphMol.dir/QueryBond.cpp.o CMakeFiles/GraphMol.dir/Bond.cpp.o CMakeFiles/GraphMol.dir/MolOps.cpp.o CMakeFiles/GraphMol.dir/FindRings.cpp.o CMakeFiles/GraphMol.dir/ROMol.cpp.o CMakeFiles/GraphMol.dir/RWMol.cpp.o CMakeFiles/GraphMol.dir/PeriodicTable.cpp.o CMakeFiles/GraphMol.dir/atomic_data.cpp.o CMakeFiles/GraphMol.dir/QueryOps.cpp.o CMakeFiles/GraphMol.dir/MolPickler.cpp.o CMakeFiles/GraphMol.dir/Canon.cpp.o CMakeFiles/GraphMol.dir/AtomIterators.cpp.o CMakeFiles/GraphMol.dir/BondIterators.cpp.o CMakeFiles/GraphMol.dir/Aromaticity.cpp.o CMakeFiles/GraphMol.dir/Kekulize.cpp.o CMakeFiles/GraphMol.dir/ConjugHybrid.cpp.o CMakeFiles/GraphMol.dir/AddHs.cpp.o CMakeFiles/GraphMol.dir/Matrices.cpp.o CMakeFiles/GraphMol.dir/Chirality.cpp.o CMakeFiles/GraphMol.dir/RingInfo.cpp.o CMakeFiles/GraphMol.dir/Conformer.cpp.o CMakeFiles/GraphMol.dir/Renumber.cpp.o CMakeFiles/GraphMol.dir/AdjustQuery.cpp.o CMakeFiles/GraphMol.dir/Resonance.cpp.o CMakeFiles/GraphMol.dir/StereoGroup.cpp.o CMakeFiles/GraphMol.dir/new_canon.cpp.o CMakeFiles/GraphMol.dir/SubstanceGroup.cpp.o CMakeFiles/GraphMol.dir/FindStereo.cpp.o CMakeFiles/GraphMol.dir/MonomerInfo.cpp.o CMakeFiles/GraphMol.dir/NontetrahedralStereo.cpp.o CMakeFiles/GraphMol.dir/WedgeBonds.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl -lpthread cd /construction/science/rdkit/.build/Code/GraphMol && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so.1 CMakeFiles/CMakeRelink.dir/libRDKitGraphMol.so /usr/bin/make -f Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/build.make Code/GraphMol/SmilesParse/CMakeFiles/SmilesParse.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SmilesParse.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSmilesParse.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so.1.2023.03.2 CMakeFiles/SmilesParse.dir/SmilesParse.cpp.o CMakeFiles/SmilesParse.dir/SmilesParseOps.cpp.o CMakeFiles/SmilesParse.dir/SmilesWrite.cpp.o CMakeFiles/SmilesParse.dir/SmartsWrite.cpp.o CMakeFiles/SmilesParse.dir/CXSmilesOps.cpp.o CMakeFiles/SmilesParse.dir/smarts.tab.cpp.o CMakeFiles/SmilesParse.dir/smiles.tab.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmarts.cpp.o CMakeFiles/SmilesParse.dir/lex.yysmiles.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/SmilesParse && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSmilesParse.so /usr/bin/make -f Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/build.make Code/GraphMol/Depictor/CMakeFiles/Depictor.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Depictor.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDepictor.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so.1.2023.03.2 CMakeFiles/Depictor.dir/RDDepictor.cpp.o CMakeFiles/Depictor.dir/EmbeddedFrag.cpp.o CMakeFiles/Depictor.dir/DepictUtils.cpp.o CMakeFiles/Depictor.dir/Templates.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitMolAlign.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Depictor && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDepictor.so /usr/bin/make -f Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/build.make Code/GraphMol/Depictor/Wrap/CMakeFiles/rdDepictor.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdDepictor.so cd /construction/science/rdkit/.build/Code/GraphMol/Depictor/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDepictor.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdDepictor.so CMakeFiles/rdDepictor.dir/rdDepictor.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/build.make Code/GraphMol/FileParsers/CMakeFiles/FileParsers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FileParsers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFileParsers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so.1.2023.03.2 CMakeFiles/FileParsers.dir/CDXMLParser.cpp.o CMakeFiles/FileParsers.dir/Mol2FileParser.cpp.o CMakeFiles/FileParsers.dir/MolFileParser.cpp.o CMakeFiles/FileParsers.dir/MolSGroupParsing.cpp.o CMakeFiles/FileParsers.dir/MolSGroupWriting.cpp.o CMakeFiles/FileParsers.dir/MolFileStereochem.cpp.o CMakeFiles/FileParsers.dir/MolFileWriter.cpp.o CMakeFiles/FileParsers.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SDWriter.cpp.o CMakeFiles/FileParsers.dir/SmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/SmilesWriter.cpp.o CMakeFiles/FileParsers.dir/TDTMolSupplier.cpp.o CMakeFiles/FileParsers.dir/TDTWriter.cpp.o CMakeFiles/FileParsers.dir/TplFileParser.cpp.o CMakeFiles/FileParsers.dir/TplFileWriter.cpp.o CMakeFiles/FileParsers.dir/PDBParser.cpp.o CMakeFiles/FileParsers.dir/PDBWriter.cpp.o CMakeFiles/FileParsers.dir/PDBSupplier.cpp.o CMakeFiles/FileParsers.dir/CMLWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileWriter.cpp.o CMakeFiles/FileParsers.dir/XYZFileParser.cpp.o CMakeFiles/FileParsers.dir/MaeMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MaeWriter.cpp.o CMakeFiles/FileParsers.dir/ProximityBonds.cpp.o CMakeFiles/FileParsers.dir/SequenceParsers.cpp.o CMakeFiles/FileParsers.dir/SequenceWriters.cpp.o CMakeFiles/FileParsers.dir/SVGParser.cpp.o CMakeFiles/FileParsers.dir/PNGParser.cpp.o CMakeFiles/FileParsers.dir/MultithreadedMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/FileParsers.dir/MultithreadedSDMolSupplier.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/FileParsers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFileParsers.so /usr/bin/make -f Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/build.make Code/GraphMol/Substruct/CMakeFiles/SubstructMatch.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructMatch.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSubstructMatch.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so.1.2023.03.2 CMakeFiles/SubstructMatch.dir/SubstructMatch.cpp.o CMakeFiles/SubstructMatch.dir/SubstructUtils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Substruct && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSubstructMatch.so /usr/bin/make -f Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/build.make Code/GraphMol/GenericGroups/CMakeFiles/GenericGroups.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitGenericGroups.so cd /construction/science/rdkit/.build/Code/GraphMol/GenericGroups && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/GenericGroups.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitGenericGroups.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitGenericGroups.so.1.2023.03.2 CMakeFiles/GenericGroups.dir/GenericGroups.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/GenericGroups && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitGenericGroups.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitGenericGroups.so.1 CMakeFiles/CMakeRelink.dir/libRDKitGenericGroups.so /usr/bin/make -f Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/build.make Code/GraphMol/ChemReactions/CMakeFiles/ChemReactions.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemReactions.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitChemReactions.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so.1.2023.03.2 CMakeFiles/ChemReactions.dir/Reaction.cpp.o CMakeFiles/ChemReactions.dir/MDLParser.cpp.o CMakeFiles/ChemReactions.dir/DaylightParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionPickler.cpp.o CMakeFiles/ChemReactions.dir/ReactionWriter.cpp.o CMakeFiles/ChemReactions.dir/ReactionDepict.cpp.o CMakeFiles/ChemReactions.dir/ReactionFingerprints.cpp.o CMakeFiles/ChemReactions.dir/ReactionUtils.cpp.o CMakeFiles/ChemReactions.dir/MoleculeParser.cpp.o CMakeFiles/ChemReactions.dir/ReactionRunner.cpp.o CMakeFiles/ChemReactions.dir/PreprocessRxn.cpp.o CMakeFiles/ChemReactions.dir/SanitizeRxn.cpp.o CMakeFiles/ChemReactions.dir/PNGParser.cpp.o CMakeFiles/ChemReactions.dir/CDXMLParser.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/Enumerate.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EnumerationPickler.cpp.o CMakeFiles/ChemReactions.dir/Enumerate/EvenSamplePairs.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so.1 CMakeFiles/CMakeRelink.dir/libRDKitChemReactions.so /usr/bin/make -f Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/build.make Code/GraphMol/ChemReactions/Wrap/CMakeFiles/rdChemReactions.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdChemReactions.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemReactions/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdChemReactions.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdChemReactions.so CMakeFiles/rdChemReactions.dir/Enumerate.cpp.o CMakeFiles/rdChemReactions.dir/rdChemReactions.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/build.make Code/GraphMol/ChemTransforms/CMakeFiles/ChemTransforms.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemTransforms.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitChemTransforms.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so.1.2023.03.2 CMakeFiles/ChemTransforms.dir/ChemTransforms.cpp.o CMakeFiles/ChemTransforms.dir/MolFragmenter.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ChemTransforms && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so.1 CMakeFiles/CMakeRelink.dir/libRDKitChemTransforms.so /usr/bin/make -f Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/CMakeFiles/TautomerQuery.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitTautomerQuery.so cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/TautomerQuery.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitTautomerQuery.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitTautomerQuery.so.1.2023.03.2 CMakeFiles/TautomerQuery.dir/TautomerQuery.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitTautomerQuery.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitTautomerQuery.so.1 CMakeFiles/CMakeRelink.dir/libRDKitTautomerQuery.so /usr/bin/make -f Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/build.make Code/GraphMol/TautomerQuery/Wrap/CMakeFiles/rdTautomerQuery.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdTautomerQuery.so cd /construction/science/rdkit/.build/Code/GraphMol/TautomerQuery/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdTautomerQuery.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdTautomerQuery.so CMakeFiles/rdTautomerQuery.dir/rdTautomerQuery.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/build.make Code/GraphMol/Subgraphs/CMakeFiles/Subgraphs.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Subgraphs.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSubgraphs.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so.1.2023.03.2 CMakeFiles/Subgraphs.dir/Subgraphs.cpp.o CMakeFiles/Subgraphs.dir/SubgraphUtils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/Subgraphs && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSubgraphs.so /usr/bin/make -f Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/build.make Code/GraphMol/FilterCatalog/CMakeFiles/FilterCatalog.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FilterCatalog.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFilterCatalog.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so.1.2023.03.2 CMakeFiles/FilterCatalog.dir/Filters.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalog.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogEntry.cpp.o CMakeFiles/FilterCatalog.dir/FilterCatalogRunner.cpp.o CMakeFiles/FilterCatalog.dir/FilterMatchers.cpp.o CMakeFiles/FilterCatalog.dir/FunctionalGroupHierarchy.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFilterCatalog.so /usr/bin/make -f Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/build.make Code/GraphMol/FilterCatalog/Wrap/CMakeFiles/rdfiltercatalog.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdfiltercatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FilterCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfiltercatalog.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdfiltercatalog.so CMakeFiles/rdfiltercatalog.dir/rdfiltercatalog.cpp.o CMakeFiles/rdfiltercatalog.dir/FilterCatalog.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/build.make Code/GraphMol/FragCatalog/CMakeFiles/FragCatalog.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FragCatalog.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFragCatalog.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so.1.2023.03.2 CMakeFiles/FragCatalog.dir/FragCatalogUtils.cpp.o CMakeFiles/FragCatalog.dir/FragCatGenerator.cpp.o CMakeFiles/FragCatalog.dir/FragCatalogEntry.cpp.o CMakeFiles/FragCatalog.dir/FragCatParams.cpp.o CMakeFiles/FragCatalog.dir/FragFPGenerator.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFragCatalog.so /usr/bin/make -f Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/build.make Code/GraphMol/FragCatalog/Wrap/CMakeFiles/rdfragcatalog.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdfragcatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/FragCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdfragcatalog.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdfragcatalog.so CMakeFiles/rdfragcatalog.dir/rdfragcatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatalog.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatParams.cpp.o CMakeFiles/rdfragcatalog.dir/FragCatGenerator.cpp.o CMakeFiles/rdfragcatalog.dir/FragFPGenerator.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitFragCatalog.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/build.make Code/GraphMol/Descriptors/CMakeFiles/Descriptors.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDescriptors.so cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Descriptors.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDescriptors.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDescriptors.so.1.2023.03.2 CMakeFiles/Descriptors.dir/Crippen.cpp.o CMakeFiles/Descriptors.dir/BCUT.cpp.o CMakeFiles/Descriptors.dir/MolDescriptors.cpp.o CMakeFiles/Descriptors.dir/MolSurf.cpp.o CMakeFiles/Descriptors.dir/Lipinski.cpp.o CMakeFiles/Descriptors.dir/ConnectivityDescriptors.cpp.o CMakeFiles/Descriptors.dir/MQN.cpp.o CMakeFiles/Descriptors.dir/Property.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR2D.cpp.o CMakeFiles/Descriptors.dir/Data3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/MolData3Ddescriptors.cpp.o CMakeFiles/Descriptors.dir/USRDescriptor.cpp.o CMakeFiles/Descriptors.dir/AtomFeat.cpp.o CMakeFiles/Descriptors.dir/OxidationNumbers.cpp.o CMakeFiles/Descriptors.dir/EEM.cpp.o CMakeFiles/Descriptors.dir/PBF.cpp.o CMakeFiles/Descriptors.dir/PMI.cpp.o CMakeFiles/Descriptors.dir/AUTOCORR3D.cpp.o CMakeFiles/Descriptors.dir/RDF.cpp.o CMakeFiles/Descriptors.dir/MORSE.cpp.o CMakeFiles/Descriptors.dir/GETAWAY.cpp.o CMakeFiles/Descriptors.dir/WHIM.cpp.o CMakeFiles/Descriptors.dir/CoulombMat.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDescriptors.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDescriptors.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDescriptors.so /usr/bin/make -f Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/build.make Code/GraphMol/Descriptors/Wrap/CMakeFiles/rdMolDescriptors.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolDescriptors.so cd /construction/science/rdkit/.build/Code/GraphMol/Descriptors/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolDescriptors.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolDescriptors.so CMakeFiles/rdMolDescriptors.dir/rdMolDescriptors.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/build.make Code/GraphMol/Fingerprints/CMakeFiles/Fingerprints.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Fingerprints.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFingerprints.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so.1.2023.03.2 CMakeFiles/Fingerprints.dir/Fingerprints.cpp.o CMakeFiles/Fingerprints.dir/PatternFingerprints.cpp.o CMakeFiles/Fingerprints.dir/MorganFingerprints.cpp.o CMakeFiles/Fingerprints.dir/AtomPairs.cpp.o CMakeFiles/Fingerprints.dir/MACCS.cpp.o CMakeFiles/Fingerprints.dir/MHFP.cpp.o CMakeFiles/Fingerprints.dir/FingerprintGenerator.cpp.o CMakeFiles/Fingerprints.dir/AtomPairGenerator.cpp.o CMakeFiles/Fingerprints.dir/MorganGenerator.cpp.o CMakeFiles/Fingerprints.dir/RDKitFPGenerator.cpp.o CMakeFiles/Fingerprints.dir/FingerprintUtil.cpp.o CMakeFiles/Fingerprints.dir/TopologicalTorsionGenerator.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFingerprints.so /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdFingerprintGenerator.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdFingerprintGenerator.so cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdFingerprintGenerator.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdFingerprintGenerator.so CMakeFiles/rdFingerprintGenerator.dir/FingerprintGeneratorWrapper.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/build.make Code/GraphMol/Fingerprints/Wrap/CMakeFiles/rdMHFPFingerprint.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMHFPFingerprint.so cd /construction/science/rdkit/.build/Code/GraphMol/Fingerprints/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMHFPFingerprint.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMHFPFingerprint.so CMakeFiles/rdMHFPFingerprint.dir/MHFPWrapper.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/build.make Code/GraphMol/PartialCharges/CMakeFiles/PartialCharges.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/PartialCharges.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitPartialCharges.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so.1.2023.03.2 CMakeFiles/PartialCharges.dir/GasteigerCharges.cpp.o CMakeFiles/PartialCharges.dir/GasteigerParams.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so.1 CMakeFiles/CMakeRelink.dir/libRDKitPartialCharges.so /usr/bin/make -f Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/build.make Code/GraphMol/PartialCharges/Wrap/CMakeFiles/rdPartialCharges.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdPartialCharges.so cd /construction/science/rdkit/.build/Code/GraphMol/PartialCharges/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdPartialCharges.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdPartialCharges.so CMakeFiles/rdPartialCharges.dir/rdPartialCharges.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/build.make Code/GraphMol/MolTransforms/CMakeFiles/MolTransforms.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolTransforms.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolTransforms.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolTransforms.so.1.2023.03.2 CMakeFiles/MolTransforms.dir/MolTransforms.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolTransforms.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolTransforms.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolTransforms.so /usr/bin/make -f Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/build.make Code/GraphMol/MolTransforms/Wrap/CMakeFiles/rdMolTransforms.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolTransforms.so cd /construction/science/rdkit/.build/Code/GraphMol/MolTransforms/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolTransforms.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolTransforms.so CMakeFiles/rdMolTransforms.dir/rdMolTransforms.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/CMakeFiles/ForceFieldHelpers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ForceFieldHelpers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitForceFieldHelpers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so.1.2023.03.2 CMakeFiles/ForceFieldHelpers.dir/UFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/UFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/AtomTyper.cpp.o CMakeFiles/ForceFieldHelpers.dir/MMFF/Builder.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionAngleM6.cpp.o CMakeFiles/ForceFieldHelpers.dir/CrystalFF/TorsionPreferences.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitForceFieldHelpers.so /usr/bin/make -f Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/build.make Code/GraphMol/ForceFieldHelpers/Wrap/CMakeFiles/rdForceFieldHelpers.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdForceFieldHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ForceFieldHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdForceFieldHelpers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdForceFieldHelpers.so CMakeFiles/rdForceFieldHelpers.dir/rdForceFields.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/build.make Code/GraphMol/DistGeomHelpers/CMakeFiles/DistGeomHelpers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/DistGeomHelpers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDistGeomHelpers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so.1.2023.03.2 CMakeFiles/DistGeomHelpers.dir/BoundsMatrixBuilder.cpp.o CMakeFiles/DistGeomHelpers.dir/Embedder.cpp.o CMakeFiles/DistGeomHelpers.dir/EmbedderUtils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDistGeomHelpers.so /usr/bin/make -f Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/build.make Code/GraphMol/DistGeomHelpers/Wrap/CMakeFiles/rdDistGeom.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdDistGeom.so cd /construction/science/rdkit/.build/Code/GraphMol/DistGeomHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDistGeom.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdDistGeom.so CMakeFiles/rdDistGeom.dir/rdDistGeom.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitDistGeomHelpers.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDistGeometry.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/MolAlign.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolAlign.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolAlign.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so.1.2023.03.2 CMakeFiles/MolAlign.dir/AlignMolecules.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolAlign.so /usr/bin/make -f Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/build.make Code/GraphMol/MolAlign/CMakeFiles/O3AAlign.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitO3AAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/O3AAlign.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitO3AAlign.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitO3AAlign.so.1.2023.03.2 CMakeFiles/O3AAlign.dir/O3AAlignMolecules.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitO3AAlign.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitO3AAlign.so.1 CMakeFiles/CMakeRelink.dir/libRDKitO3AAlign.so /usr/bin/make -f Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/build.make Code/GraphMol/MolAlign/Wrap/CMakeFiles/rdMolAlign.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolAlign.so cd /construction/science/rdkit/.build/Code/GraphMol/MolAlign/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolAlign.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolAlign.so CMakeFiles/rdMolAlign.dir/rdMolAlign.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitO3AAlign.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitForceFieldHelpers.so.1.2023.03.2 ../../../../lib/libRDKitForceField.so.1.2023.03.2 ../../../../lib/libRDKitOptimizer.so.1.2023.03.2 ../../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/CMakeFiles/MolChemicalFeatures.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolChemicalFeatures.so cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolChemicalFeatures.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolChemicalFeatures.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolChemicalFeatures.so.1.2023.03.2 CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureDef.cpp.o CMakeFiles/MolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/MolChemicalFeatures.dir/FeatureParser.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolChemicalFeatures.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolChemicalFeatures.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolChemicalFeatures.so /usr/bin/make -f Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/build.make Code/GraphMol/MolChemicalFeatures/Wrap/CMakeFiles/rdMolChemicalFeatures.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolChemicalFeatures.so cd /construction/science/rdkit/.build/Code/GraphMol/MolChemicalFeatures/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolChemicalFeatures.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolChemicalFeatures.so CMakeFiles/rdMolChemicalFeatures.dir/rdMolChemicalFeatures.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeature.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/MolChemicalFeatureFactory.cpp.o CMakeFiles/rdMolChemicalFeatures.dir/ChemicalFeatureUtils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/CMakeFiles/ShapeHelpers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ShapeHelpers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitShapeHelpers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so.1.2023.03.2 CMakeFiles/ShapeHelpers.dir/ShapeEncoder.cpp.o CMakeFiles/ShapeHelpers.dir/ShapeUtils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitShapeHelpers.so /usr/bin/make -f Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/build.make Code/GraphMol/ShapeHelpers/Wrap/CMakeFiles/rdShapeHelpers.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdShapeHelpers.so cd /construction/science/rdkit/.build/Code/GraphMol/ShapeHelpers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdShapeHelpers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdShapeHelpers.so CMakeFiles/rdShapeHelpers.dir/rdShapeHelpers.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitShapeHelpers.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/build.make Code/GraphMol/MolCatalog/CMakeFiles/MolCatalog.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolCatalog.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolCatalog.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so.1.2023.03.2 CMakeFiles/MolCatalog.dir/MolCatalogEntry.cpp.o CMakeFiles/MolCatalog.dir/MolCatalogParams.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolCatalog.so /usr/bin/make -f Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/build.make Code/GraphMol/MolCatalog/Wrap/CMakeFiles/rdMolCatalog.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolCatalog.so cd /construction/science/rdkit/.build/Code/GraphMol/MolCatalog/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolCatalog.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolCatalog.so CMakeFiles/rdMolCatalog.dir/rdMolCatalog.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolCatalog.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/CMakeFiles/MolDraw2D.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolDraw2D.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolDraw2D.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so.1.2023.03.2 CMakeFiles/MolDraw2D.dir/MolDraw2D.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DDetails.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DUtils.cpp.o CMakeFiles/MolDraw2D.dir/AtomSymbol.cpp.o CMakeFiles/MolDraw2D.dir/DrawAnnotation.cpp.o CMakeFiles/MolDraw2D.dir/DrawMol.cpp.o CMakeFiles/MolDraw2D.dir/DrawMolMCH.cpp.o CMakeFiles/MolDraw2D.dir/DrawShape.cpp.o CMakeFiles/MolDraw2D.dir/DrawText.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextNotFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextSVG.cpp.o CMakeFiles/MolDraw2D.dir/MolDraw2DJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextJS.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFT.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTSVG.cpp.o CMakeFiles/MolDraw2D.dir/DrawTextFTJS.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 /usr/local/lib/libfreetype.so ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolDraw2D.so /usr/bin/make -f Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/build.make Code/GraphMol/MolDraw2D/Wrap/CMakeFiles/rdMolDraw2D.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolDraw2D.so cd /construction/science/rdkit/.build/Code/GraphMol/MolDraw2D/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolDraw2D.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolDraw2D.so CMakeFiles/rdMolDraw2D.dir/rdMolDraw2D.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolDraw2D.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libfreetype.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/build.make Code/GraphMol/FMCS/CMakeFiles/FMCS.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/FMCS.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitFMCS.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so.1.2023.03.2 CMakeFiles/FMCS.dir/FMCS.cpp.o CMakeFiles/FMCS.dir/Seed.cpp.o CMakeFiles/FMCS.dir/MaximumCommonSubgraph.cpp.o CMakeFiles/FMCS.dir/SubstructMatchCustom.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/lib/libz.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so.1 CMakeFiles/CMakeRelink.dir/libRDKitFMCS.so /usr/bin/make -f Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/build.make Code/GraphMol/FMCS/Wrap/CMakeFiles/rdFMCS.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdFMCS.so cd /construction/science/rdkit/.build/Code/GraphMol/FMCS/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdFMCS.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdFMCS.so CMakeFiles/rdFMCS.dir/rdFMCS.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/build.make Code/GraphMol/MolHash/CMakeFiles/MolHash.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolHash.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolHash.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so.1.2023.03.2 CMakeFiles/MolHash.dir/hashfunctions.cpp.o CMakeFiles/MolHash.dir/normalize.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib/libz.so ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/MolHash && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolHash.so /usr/bin/make -f Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/build.make Code/GraphMol/MolHash/Wrap/CMakeFiles/rdMolHash.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolHash.so cd /construction/science/rdkit/.build/Code/GraphMol/MolHash/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolHash.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolHash.so CMakeFiles/rdMolHash.dir/rdMolHash.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolHash.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/build.make Code/GraphMol/MMPA/CMakeFiles/MMPA.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MMPA.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMMPA.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so.1.2023.03.2 CMakeFiles/MMPA.dir/MMPA.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/lib/libz.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMMPA.so /usr/bin/make -f Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/build.make Code/GraphMol/MMPA/Wrap/CMakeFiles/rdMMPA.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMMPA.so cd /construction/science/rdkit/.build/Code/GraphMol/MMPA/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMMPA.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMMPA.so CMakeFiles/rdMMPA.dir/rdMMPA.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMMPA.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/CMakeFiles/CIPLabeler.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitCIPLabeler.so cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/CIPLabeler.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitCIPLabeler.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitCIPLabeler.so.1.2023.03.2 CMakeFiles/CIPLabeler.dir/CIPMol.cpp.o CMakeFiles/CIPLabeler.dir/CIPLabeler.cpp.o CMakeFiles/CIPLabeler.dir/Mancude.cpp.o CMakeFiles/CIPLabeler.dir/Digraph.cpp.o CMakeFiles/CIPLabeler.dir/Node.cpp.o CMakeFiles/CIPLabeler.dir/Edge.cpp.o CMakeFiles/CIPLabeler.dir/Sort.cpp.o CMakeFiles/CIPLabeler.dir/configs/Configuration.cpp.o CMakeFiles/CIPLabeler.dir/configs/Sp2Bond.cpp.o CMakeFiles/CIPLabeler.dir/configs/Tetrahedral.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule1b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule2.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule3.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4a.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4b.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule4c.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule5New.cpp.o CMakeFiles/CIPLabeler.dir/rules/Rule6.cpp.o CMakeFiles/CIPLabeler.dir/rules/SequenceRule.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitCIPLabeler.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitCIPLabeler.so.1 CMakeFiles/CMakeRelink.dir/libRDKitCIPLabeler.so /usr/bin/make -f Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/build.make Code/GraphMol/CIPLabeler/Wrap/CMakeFiles/rdCIPLabeler.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdCIPLabeler.so cd /construction/science/rdkit/.build/Code/GraphMol/CIPLabeler/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdCIPLabeler.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdCIPLabeler.so CMakeFiles/rdCIPLabeler.dir/rdCIPLabeler.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitCIPLabeler.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/build.make Code/GraphMol/Deprotect/CMakeFiles/Deprotect.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitDeprotect.so cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Deprotect.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitDeprotect.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitDeprotect.so.1.2023.03.2 CMakeFiles/Deprotect.dir/Deprotect.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 /usr/lib/libz.so ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitDeprotect.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitDeprotect.so.1 CMakeFiles/CMakeRelink.dir/libRDKitDeprotect.so /usr/bin/make -f Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/build.make Code/GraphMol/Deprotect/Wrap/CMakeFiles/rdDeprotect.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdDeprotect.so cd /construction/science/rdkit/.build/Code/GraphMol/Deprotect/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdDeprotect.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdDeprotect.so CMakeFiles/rdDeprotect.dir/rdDeprotect.cpp.o CMakeFiles/rdDeprotect.dir/DeprotectWrap.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitDeprotect.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/CMakeFiles/ReducedGraphs.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ReducedGraphs.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitReducedGraphs.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so.1.2023.03.2 CMakeFiles/ReducedGraphs.dir/ReducedGraphs.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so.1 CMakeFiles/CMakeRelink.dir/libRDKitReducedGraphs.so /usr/bin/make -f Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/build.make Code/GraphMol/ReducedGraphs/Wrap/CMakeFiles/rdReducedGraphs.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdReducedGraphs.so cd /construction/science/rdkit/.build/Code/GraphMol/ReducedGraphs/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdReducedGraphs.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdReducedGraphs.so CMakeFiles/rdReducedGraphs.dir/rdReducedGraphs.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitReducedGraphs.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/build.make Code/GraphMol/Trajectory/CMakeFiles/Trajectory.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Trajectory.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitTrajectory.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so.1.2023.03.2 CMakeFiles/Trajectory.dir/Trajectory.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/Trajectory && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so.1 CMakeFiles/CMakeRelink.dir/libRDKitTrajectory.so /usr/bin/make -f Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/CMakeFiles/SubstructLibrary.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SubstructLibrary.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSubstructLibrary.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so.1.2023.03.2 CMakeFiles/SubstructLibrary.dir/SubstructLibrary.cpp.o CMakeFiles/SubstructLibrary.dir/PatternFactory.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSubstructLibrary.so /usr/bin/make -f Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/build.make Code/GraphMol/SubstructLibrary/Wrap/CMakeFiles/rdSubstructLibrary.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdSubstructLibrary.so cd /construction/science/rdkit/.build/Code/GraphMol/SubstructLibrary/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSubstructLibrary.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdSubstructLibrary.so CMakeFiles/rdSubstructLibrary.dir/rdSubstructLibrary.cpp.o CMakeFiles/rdSubstructLibrary.dir/SubstructLibraryWrap.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitSubstructLibrary.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitTautomerQuery.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/CMakeFiles/RGroupDecomposition.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/RGroupDecomposition.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitRGroupDecomposition.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so.1.2023.03.2 CMakeFiles/RGroupDecomposition.dir/RGroupDecomp.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupData.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupUtils.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupCore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupDecompParams.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupFingerprintScore.cpp.o CMakeFiles/RGroupDecomposition.dir/RGroupGa.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitga.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so.1 CMakeFiles/CMakeRelink.dir/libRDKitRGroupDecomposition.so /usr/bin/make -f Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/build.make Code/GraphMol/RGroupDecomposition/Wrap/CMakeFiles/rdRGroupDecomposition.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdRGroupDecomposition.so cd /construction/science/rdkit/.build/Code/GraphMol/RGroupDecomposition/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdRGroupDecomposition.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdRGroupDecomposition.so CMakeFiles/rdRGroupDecomposition.dir/rdRGroupComposition.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitRGroupDecomposition.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitFMCS.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../../lib/libRDKitga.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/build.make Code/GraphMol/MolInterchange/CMakeFiles/MolInterchange.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolInterchange.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolInterchange.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so.1.2023.03.2 CMakeFiles/MolInterchange.dir/Parser.cpp.o CMakeFiles/MolInterchange.dir/Writer.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolInterchange.so /usr/bin/make -f Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/build.make Code/GraphMol/MolInterchange/Wrap/CMakeFiles/rdMolInterchange.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolInterchange.so cd /construction/science/rdkit/.build/Code/GraphMol/MolInterchange/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolInterchange.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolInterchange.so CMakeFiles/rdMolInterchange.dir/rdMolInterchange.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolInterchange.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/build.make Code/GraphMol/SLNParse/CMakeFiles/SLNParse.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSLNParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SLNParse.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSLNParse.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSLNParse.so.1.2023.03.2 CMakeFiles/SLNParse.dir/SLNParse.cpp.o CMakeFiles/SLNParse.dir/SLNAttribs.cpp.o CMakeFiles/SLNParse.dir/sln.tab.cpp.o CMakeFiles/SLNParse.dir/lex.yysln.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -lpthread cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSLNParse.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSLNParse.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSLNParse.so /usr/bin/make -f Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/build.make Code/GraphMol/SLNParse/Wrap/CMakeFiles/rdSLNParse.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdSLNParse.so cd /construction/science/rdkit/.build/Code/GraphMol/SLNParse/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSLNParse.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdSLNParse.so CMakeFiles/rdSLNParse.dir/rdSLNParse.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitSLNParse.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdchem.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdchem.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdchem.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdchem.so CMakeFiles/rdchem.dir/rdchem.cpp.o CMakeFiles/rdchem.dir/Table.cpp.o CMakeFiles/rdchem.dir/Atom.cpp.o CMakeFiles/rdchem.dir/Bond.cpp.o CMakeFiles/rdchem.dir/Mol.cpp.o CMakeFiles/rdchem.dir/Conformer.cpp.o CMakeFiles/rdchem.dir/RingInfo.cpp.o CMakeFiles/rdchem.dir/EditableMol.cpp.o CMakeFiles/rdchem.dir/MonomerInfo.cpp.o CMakeFiles/rdchem.dir/ResonanceMolSupplier.cpp.o CMakeFiles/rdchem.dir/MolBundle.cpp.o CMakeFiles/rdchem.dir/StereoGroup.cpp.o CMakeFiles/rdchem.dir/SubstanceGroup.cpp.o CMakeFiles/rdchem.dir/Chirality.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolops.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdmolops.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdmolops.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdmolops.so CMakeFiles/rdmolops.dir/rdmolops.cpp.o CMakeFiles/rdmolops.dir/MolOps.cpp.o CMakeFiles/rdmolops.dir/ChiralityOps.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdqueries.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdqueries.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdqueries.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdqueries.so CMakeFiles/rdqueries.dir/rdqueries.cpp.o CMakeFiles/rdqueries.dir/Queries.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdmolfiles.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdmolfiles.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdmolfiles.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdmolfiles.so CMakeFiles/rdmolfiles.dir/rdmolfiles.cpp.o CMakeFiles/rdmolfiles.dir/ForwardSDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MaeWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/TDTMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/SmilesWriter.cpp.o CMakeFiles/rdmolfiles.dir/SDWriter.cpp.o CMakeFiles/rdmolfiles.dir/TDTWriter.cpp.o CMakeFiles/rdmolfiles.dir/PDBWriter.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSmilesMolSupplier.cpp.o CMakeFiles/rdmolfiles.dir/MultithreadedSDMolSupplier.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/bin/make -f Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/build.make Code/GraphMol/Wrap/CMakeFiles/rdtrajectory.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdtrajectory.so cd /construction/science/rdkit/.build/Code/GraphMol/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdtrajectory.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdtrajectory.so CMakeFiles/rdtrajectory.dir/Trajectory.cpp.o CMakeFiles/rdtrajectory.dir/rdTrajectory.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitTrajectory.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/bin/make -f Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/build.make Code/GraphMol/MolStandardize/CMakeFiles/MolStandardize.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolStandardize.so cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolStandardize.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolStandardize.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolStandardize.so.1.2023.03.2 CMakeFiles/MolStandardize.dir/MolStandardize.cpp.o CMakeFiles/MolStandardize.dir/Metal.cpp.o CMakeFiles/MolStandardize.dir/Normalize.cpp.o CMakeFiles/MolStandardize.dir/Validate.cpp.o CMakeFiles/MolStandardize.dir/Charge.cpp.o CMakeFiles/MolStandardize.dir/Tautomer.cpp.o CMakeFiles/MolStandardize.dir/Fragment.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/FragmentCatalog/FragmentCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/AcidBaseCatalog/AcidBaseCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TransformCatalog/TransformCatalogUtils.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogEntry.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogParams.cpp.o CMakeFiles/MolStandardize.dir/TautomerCatalog/TautomerCatalogUtils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolStandardize.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolStandardize.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolStandardize.so /usr/bin/make -f Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/build.make Code/GraphMol/MolStandardize/Wrap/CMakeFiles/rdMolStandardize.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolStandardize.so cd /construction/science/rdkit/.build/Code/GraphMol/MolStandardize/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolStandardize.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolStandardize.so CMakeFiles/rdMolStandardize.dir/rdMolStandardize.cpp.o CMakeFiles/rdMolStandardize.dir/Validate.cpp.o CMakeFiles/rdMolStandardize.dir/Charge.cpp.o CMakeFiles/rdMolStandardize.dir/Fragment.cpp.o CMakeFiles/rdMolStandardize.dir/Normalize.cpp.o CMakeFiles/rdMolStandardize.dir/Metal.cpp.o CMakeFiles/rdMolStandardize.dir/Tautomer.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/CMakeFiles/ScaffoldNetwork.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitScaffoldNetwork.so cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ScaffoldNetwork.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitScaffoldNetwork.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitScaffoldNetwork.so.1.2023.03.2 CMakeFiles/ScaffoldNetwork.dir/ScaffoldNetwork.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitScaffoldNetwork.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitScaffoldNetwork.so.1 CMakeFiles/CMakeRelink.dir/libRDKitScaffoldNetwork.so /usr/bin/make -f Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/build.make Code/GraphMol/ScaffoldNetwork/Wrap/CMakeFiles/rdScaffoldNetwork.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdScaffoldNetwork.so cd /construction/science/rdkit/.build/Code/GraphMol/ScaffoldNetwork/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdScaffoldNetwork.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdScaffoldNetwork.so CMakeFiles/rdScaffoldNetwork.dir/rdScaffoldNetwork.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitScaffoldNetwork.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitMolStandardize.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/CMakeFiles/MolEnumerator.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitMolEnumerator.so cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/MolEnumerator.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitMolEnumerator.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitMolEnumerator.so.1.2023.03.2 CMakeFiles/MolEnumerator.dir/MolEnumerator.cpp.o CMakeFiles/MolEnumerator.dir/PositionVariation.cpp.o CMakeFiles/MolEnumerator.dir/LinkNode.cpp.o CMakeFiles/MolEnumerator.dir/RepeatUnit.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../lib/libRDKitFileParsers.so.1.2023.03.2 ../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/lib/libz.so ../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/local/lib/libboost_serialization.so cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitMolEnumerator.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitMolEnumerator.so.1 CMakeFiles/CMakeRelink.dir/libRDKitMolEnumerator.so /usr/bin/make -f Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/build.make Code/GraphMol/MolEnumerator/Wrap/CMakeFiles/rdMolEnumerator.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMolEnumerator.so cd /construction/science/rdkit/.build/Code/GraphMol/MolEnumerator/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMolEnumerator.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMolEnumerator.so CMakeFiles/rdMolEnumerator.dir/rdMolEnumerator.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitMolEnumerator.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitChemReactions.so.1.2023.03.2 ../../../../lib/libRDKitFilterCatalog.so.1.2023.03.2 ../../../../lib/libRDKitCatalogs.so.1.2023.03.2 ../../../../lib/libRDKitDescriptors.so.1.2023.03.2 ../../../../lib/libRDKitFileParsers.so.1.2023.03.2 /usr/lib/libz.so ../../../../lib/libRDKitPartialCharges.so.1.2023.03.2 ../../../../lib/libRDKitFingerprints.so.1.2023.03.2 ../../../../lib/libRDKitSubgraphs.so.1.2023.03.2 ../../../../lib/libRDKitChemTransforms.so.1.2023.03.2 ../../../../lib/libRDKitDepictor.so.1.2023.03.2 ../../../../lib/libRDKitMolAlign.so.1.2023.03.2 ../../../../lib/libRDKitAlignment.so.1.2023.03.2 /usr/local/lib/libcoordgen.so /usr/local/lib/libmaeparser.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so /usr/local/lib/libboost_system.so /usr/local/lib/libboost_iostreams.so /usr/local/lib/libboost_regex.so ../../../../lib/libRDKitMolTransforms.so.1.2023.03.2 ../../../../lib/libRDKitEigenSolvers.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/build.make Code/GraphMol/Abbreviations/CMakeFiles/Abbreviations.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitAbbreviations.so cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Abbreviations.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitAbbreviations.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitAbbreviations.so.1.2023.03.2 CMakeFiles/Abbreviations.dir/Abbreviations.cpp.o CMakeFiles/Abbreviations.dir/AbbreviationsUtils.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitAbbreviations.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitAbbreviations.so.1 CMakeFiles/CMakeRelink.dir/libRDKitAbbreviations.so /usr/bin/make -f Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/build.make Code/GraphMol/Abbreviations/Wrap/CMakeFiles/rdAbbreviations.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdAbbreviations.so cd /construction/science/rdkit/.build/Code/GraphMol/Abbreviations/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdAbbreviations.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdAbbreviations.so CMakeFiles/rdAbbreviations.dir/rdAbbreviations.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitAbbreviations.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitSmilesParse.so.1.2023.03.2 ../../../../lib/libRDKitSubstructMatch.so.1.2023.03.2 ../../../../lib/libRDKitGenericGroups.so.1.2023.03.2 ../../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/build.make Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdMetricMatrixCalc.so cd /construction/science/rdkit/.build/Code/DataManip/MetricMatrixCalc/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdMetricMatrixCalc.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdMetricMatrixCalc.so CMakeFiles/rdMetricMatrixCalc.dir/rdMetricMatrixCalc.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/build.make Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitSimDivPickers.so cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/SimDivPickers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitSimDivPickers.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitSimDivPickers.so.1.2023.03.2 CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o ../../lib/libRDKithc.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/SimDivPickers && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitSimDivPickers.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitSimDivPickers.so.1 CMakeFiles/CMakeRelink.dir/libRDKitSimDivPickers.so /usr/bin/make -f Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/build.make Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdSimDivPickers.so cd /construction/science/rdkit/.build/Code/SimDivPickers/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdSimDivPickers.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdSimDivPickers.so CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/LeaderPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitSimDivPickers.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKithc.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/preinstall Linking C shared library CMakeFiles/CMakeRelink.dir/libRDKithc.so cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/hc.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/cc -fPIC -pipe -O2 -fno-strict-aliasing -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKithc.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKithc.so.1.2023.03.2 CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o -lpthread cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKithc.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKithc.so.1 CMakeFiles/CMakeRelink.dir/libRDKithc.so /usr/bin/make -f Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/build.make Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/Clustering.so cd /construction/science/rdkit/.build/Code/ML/Cluster/Murtagh && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Clustering.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/Clustering.so CMakeFiles/Clustering.dir/Clustering.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKithc.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/bin/make -f Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/build.make Code/ML/InfoTheory/CMakeFiles/InfoTheory.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/InfoTheory.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitInfoTheory.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so.1.2023.03.2 CMakeFiles/InfoTheory.dir/InfoBitRanker.cpp.o ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/ML/InfoTheory && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so.1 CMakeFiles/CMakeRelink.dir/libRDKitInfoTheory.so /usr/bin/make -f Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/build.make Code/ML/InfoTheory/Wrap/CMakeFiles/rdInfoTheory.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdInfoTheory.so cd /construction/science/rdkit/.build/Code/ML/InfoTheory/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdInfoTheory.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdInfoTheory.so CMakeFiles/rdInfoTheory.dir/InfoBitRanker.cpp.o CMakeFiles/rdInfoTheory.dir/BitCorrMatGenerator.cpp.o CMakeFiles/rdInfoTheory.dir/rdInfoTheory.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl /usr/bin/make -f Code/ML/Data/CMakeFiles/cQuantize.dir/build.make Code/ML/Data/CMakeFiles/cQuantize.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/cQuantize.so cd /construction/science/rdkit/.build/Code/ML/Data && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/cQuantize.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/cQuantize.so CMakeFiles/cQuantize.dir/cQuantize.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitInfoTheory.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -ldl /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so -lpthread /usr/bin/make -f Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/build.make Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libRDKitChemicalFeatures.so cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/ChemicalFeatures.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libRDKitChemicalFeatures.so.1 -o CMakeFiles/CMakeRelink.dir/libRDKitChemicalFeatures.so.1.2023.03.2 CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o ../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../lib/libRDKitDataStructs.so.1.2023.03.2 ../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl cd /construction/science/rdkit/.build/Code/ChemicalFeatures && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libRDKitChemicalFeatures.so.1.2023.03.2 CMakeFiles/CMakeRelink.dir/libRDKitChemicalFeatures.so.1 CMakeFiles/CMakeRelink.dir/libRDKitChemicalFeatures.so /usr/bin/make -f Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/build.make Code/ChemicalFeatures/Wrap/CMakeFiles/rdChemicalFeatures.dir/preinstall Linking CXX shared module CMakeFiles/CMakeRelink.dir/rdChemicalFeatures.so cd /construction/science/rdkit/.build/Code/ChemicalFeatures/Wrap && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/rdChemicalFeatures.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -mpopcnt -Wno-deprecated -Wno-unused-function -fno-strict-aliasing -Wall -Wextra -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -pthread -shared -L/usr/local/lib -Wl,-rpath=/usr/local/lib -L/usr/local/lib -Wl,-rpath,/usr/local/lib -shared -o CMakeFiles/CMakeRelink.dir/rdChemicalFeatures.so CMakeFiles/rdChemicalFeatures.dir/rdChemicalFeatures.cpp.o CMakeFiles/rdChemicalFeatures.dir/FreeChemicalFeature.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib ../../../lib/libRDKitChemicalFeatures.so.1.2023.03.2 ../../../lib/libRDKitGraphMol.so.1.2023.03.2 ../../../lib/libRDKitRDBoost.so.1.2023.03.2 ../../../lib/libRDKitRDGeometryLib.so.1.2023.03.2 ../../../lib/libRDKitDataStructs.so.1.2023.03.2 /usr/local/lib/libboost_serialization.so ../../../lib/libRDKitRingDecomposerLib.so.1.2023.03.2 /usr/local/lib/libpython3.9.so /usr/local/lib/libboost_python39.so ../../../lib/libRDKitRDGeneral.so.1.2023.03.2 -lpthread -ldl Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Avalon -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Avalon/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/inchi.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AllChem.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Pairs.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Sheridan.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Torsions.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/Utils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/AtomPairs/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/BRICS.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/BuildFragmentCatalog.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/AlignDepict.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/BulkTester.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/DescriptorUtilities.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/SDFToCSV.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/TemplateExpand.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemUtils/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemicalFeatures.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ChemicalForceFields.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Crippen.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/DSViewer.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Descriptors.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Descriptors3D.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/FreeSans.ttf -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/IPythonConsole.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/InteractiveRenderer.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/MolDrawing.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/SimilarityMaps.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/aggCanvas.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/cairoCanvas.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/canvasbase.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/mplCanvas.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/qtCanvas.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/spingCanvas.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/AtomTypes.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/EState.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/EState_VSA.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/Fingerprinter.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EState/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EnumerateHeterocycles.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/EnumerateStereoisomers.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FastSDMolSupplier.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatFinderCLI.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapParser.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapPoint.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMapUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/FeatMaps.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FeatMaps/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features/FeatDirUtilsRD.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features/ShowFeats.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Features/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FilterCatalog.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/ClusterMols.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/DbFpSupplier.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/FingerprintMols.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/MolSimilarity.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/SimilarityScreener.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fingerprints/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fraggle -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fraggle/FraggleSim.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fraggle/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FragmentCatalog.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FragmentMatcher.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Fragments.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/FunctionalGroups.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/GraphDescriptors.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Graphs.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Lipinski.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MACCSkeys.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MCS.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolCatalog.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/FingerprintUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/Loader.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/Loader_orig.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/Loader_sa.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolDb/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey/InchiInfo.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey/MolKey.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolKey/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/charge.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/errors.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/fragment.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/metal.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/normalize.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/resonance.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/standardize.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/tautomer.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/test_standardizer.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/utils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/validate.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/validations.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolSurf.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PandasPatcher.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PandasTools.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Generate.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Gobbi_Pharm2D.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/LazyGenerator.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Matcher.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/SigFactory.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/Utils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm2D/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/EmbedLib.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/ExcludedVolume.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/Pharmacophore.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Pharm3D/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PropertyMol.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/PyMol.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/QED.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Randomize.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Recap.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ReducedGraphs.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/RegistrationHash.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SATIS.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SaltRemover.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/MurckoScaffold.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/ScaffoldNetwork.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/ShowMols.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SimpleEnum -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SimpleEnum/Enumerator.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/SimpleEnum/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/BuilderUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeAligner.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeBuilder.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/SubshapeObjects.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Subshape/testCombined.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers/DbMolSupplier.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers/MolSupplier.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Suppliers/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/TemplateAlign.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/TorsionFingerprints.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs/fmcs -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/fmcs/fmcs.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests/ChEMBL_quinolones.tsv -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests/github4823.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/nbtests/rdkit-structure-renderer.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/Metric -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/Metric/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/BitEnsemble.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/BitEnsembleDb.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/BitUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/HierarchyVis.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/LazySignature.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/TopNContainer.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/VectCollection.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbConnection.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbInfo.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbModule.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbReport.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbResultSet.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/DbUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/StorageUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Dbase/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DistanceGeometry -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DistanceGeometry/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ForceField -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ForceField/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Geometry -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Geometry/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/AnalyzeComposite.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/BuildComposite.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Butina.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/ClusterUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/ClusterVis.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Clusters.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Murtagh.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Resemblance.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Standardize.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/murtagh_test.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/AdjustComposite.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/BayesComposite.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/Composite.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Composite/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/CompositeRun.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/DataUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/FindQuantBounds.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/MLData.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/Quantize.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/SplitData.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/Stats.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/Transforms.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/BuildQuantTree.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/BuildSigTree.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/CrossValidate.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/DecTree.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/Forest.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/ID3.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/PruneTree.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/QuantTree.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/SigTree.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/Tree.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/TreeUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/TreeVis.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/DecTree/randomtest.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/CompoundDescriptors.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/Descriptors.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/MoleculeDescriptors.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/Parser.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Descriptors/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/EnrichPlot.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/GrowComposite.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/BitClusterer.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/BitRank.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/entropy.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/CrossValidate.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/DistFunctions.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/KNNClassificationModel.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/KNNModel.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/KNNRegressionModel.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/KNN/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MLUtils -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MLUtils/VoteImg.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MLUtils/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/MatOps.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage/PackageUtils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage/Packager.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ModelPackage/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes/ClassificationModel.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes/CrossValidate.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/NaiveBayes/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/ActFuncs.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/CrossValidate.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/NetNode.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/Network.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/Trainers.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Neural/architecture.txt -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/SLT -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/SLT/Risk.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/SLT/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Scoring -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Scoring/Scoring.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Scoring/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/ScreenComposite.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/files.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Numerics -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Numerics/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/RDConfig.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/RDLogger.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/RDRandom.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters/SimilarityPickers.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/TestRunner.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Filter.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Node.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/DbMolSupply.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/DbPickleSupplier.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SDSupply.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsMolFilter.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmartsRemover.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesDupeFilter.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesOutput.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/SmilesSupply.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/NodeLib/demo.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Output.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Supply.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/Transform.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/VLib/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/six.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfdoc.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfgen.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfgeom.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfmetrics.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pdfutils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PDF/pidPDF.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pidPIL.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-10.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-12.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-14.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-18.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-24.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-8.pil.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-10.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-12.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-14.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-18.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-24.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/courier-bold-8.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-10.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-12.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-14.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-18.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-24.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-8.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-10.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-12.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-14.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-18.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-24.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/helvetica-bold-8.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/metrics.dat -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/removemedium.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-10.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-12.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-14.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-18.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-24.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/symbol-8.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-10.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-10.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-12.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-12.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-14.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-14.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-18.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-18.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-24.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-24.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-8.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-8.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-10.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-12.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-14.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-18.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-24.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pbm -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PIL/pilfonts/times-bold-8.pil -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/fontinfo.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/latin1MetricsCache.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/pidPS.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/PS/psmetrics.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart/Fontmapping.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Pyart/pidPyart.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt/pidQt.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/Qt/pidQt4.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/README -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/ReportLab -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/ReportLab/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/ReportLab/pidReportLab.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/SVG -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/SVG/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/SVG/pidSVG.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/TK -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/TK/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/TK/pidTK.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX/pidWX.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/WX/pidWxDc.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/colors.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples/formatted-strings.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples/tkCanvas-with-scrollbars.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/examples/tkCanvasPIL-with-scrollbars.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/pagesizes.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/patches -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/patches/Imaging-1.1-fixplugin-path -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/patches/Imaging-1.1.1.diff -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/pid.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/stringformat.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/pidtest.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/pstests.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/tests/testallps.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/util -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/util/HTMLPiddler.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/util/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/sping/utils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/cactvs.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/chemdraw.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/chemdraw_qax.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/chemutils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/comhack.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/fileutils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/listutils.py -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/retest.txt -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/utils/spiral.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/BaseFeatures.fdef -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Crippen.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/DTDs -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/DTDs/RD_Dataset.dtd -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/DTDs/RD_Model.dtd -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/DTDs/validate.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/Amadeus.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/Telex-Regular.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/amadeus_font_license.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/font_dumper.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/roboto_regular_license.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/telex_font_license.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/OFL.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Light.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-LightItalic.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Regular.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Italic.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-Bold.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Fonts/ComicNeue-BoldItalic.ttf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/FragmentDescriptors.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/FunctionalGroups.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Functional_Group_Hierarchy.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/NCI -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/NCI/first_200.props.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/NCI/first_200.tpsa.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/NCI/first_5K.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/NCI/first_5k.tpsa.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Pains -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Pains/README.md -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Pains/test_data -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Pains/test_data/run_tests.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Pains/test_data/test_set3.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Pains/test_data/wehi_mols.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Pains/wehi_pains.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/RDData.sqlt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/RDTests.sqlt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/Salts.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/SmartsLib -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/SmartsLib/RLewis_smarts.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/SmartsLib/patty_rules.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/SmartsLib/tests -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/SmartsLib/tests/bench2.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/SmartsLib/tests/fps.1000.counts.pkl.gz -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/SmartsLib/tests/mols.1000.pkl.gz -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/rddata.sql -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/struchk -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/struchk/checkfgs.chk -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/struchk/checkfgs.opt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Data/struchk/checkfgs.trn -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_CorrMat.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/DrugLikeT80_Correlation.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_CorrMat.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/FragmentLikeT80_Correlation.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_CorrMat.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/LeadLikeT80_Correlation.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/Descriptors/Correlations/README -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/ForceField -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/ForceField/ForceFieldTerms.new.odt -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Analysis/ForceField/UFF Parameters.ods -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/BackwardsIncompatibleChanges.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/CMakeLists.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/FindMyRDKit.cmake -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example1.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example10.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example11.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example12.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example13.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example14.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example15.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example16.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example17.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example2.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example3.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example4.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example5.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example6.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example7.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example8.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/C++Examples/example9.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/Cartridge.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/Cookbook.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/GettingStartedInC++.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/GettingStartedInPython.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/Install.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/Makefile -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/Overview.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/RDKit_Book.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/api-docs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/conf.py -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/5ht3ligs.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/AmideBond.rxn -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/MinimalFeatures.fdef -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/README.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/actives_5ht3.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/actives_5ht3.sdf.gz -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/bzr.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/bzr.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/cdk2.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/chiral.mol -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/input.mol -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/invalid.mol -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/s1p_chembldoc89753.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/solubility.test.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/solubility.train.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/data/test_multi_colours.py -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/exts -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/exts/extapi.py -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/Cc1ccccc1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molA.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molB.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molC.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molD.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molE.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molF.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/EnhancedStereoSSS_molG.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_0_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_0_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_0_im2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_13_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_13_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_17_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_17_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_19_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_1_im3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_20_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_20_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im4.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_21_im5.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_22_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_22_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_23_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_23_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_28_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_28_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_29_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_2_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_2_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_30_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_30_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_32_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_32_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_33_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_33_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_33_im2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_34_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_34_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_34_im2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_35_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_36_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_36_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_37_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_37_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_37_im2.svg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_38_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_39_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_3_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_6_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_6_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_6_im2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im4.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im5.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_7_im6.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/RDKitCB_8_im0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/ary_group.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_annotation_1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_highlights_1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_highlights_2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_highlights_3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_labels_1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_labels_2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/atom_labels_3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_mol1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_mol2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_molgrid.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/cdk2_molgrid_aligned.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/indole1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/mfp2_bit872.svg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/mol_metadata1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_ex1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_ex2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_missing1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_oh1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_oh2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_sp4.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_tb1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/nontetstereo_tb2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/parastereo_1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/parastereo_2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_0.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_10.jpg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_10.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_11.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_12.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_4.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_5.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_6.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_7.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_8.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/picture_9.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/potential_stereo_double_bond1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/potential_stereo_double_bond2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/potential_stereo_double_bond3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/query_atoms.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/query_bonds.2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/query_bonds.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/rdk_bit1553.svg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/rdk_bit1553_2.svg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/reaction1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/reaction1_highlight.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_charges.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_crippen.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_fp1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_fp2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_fp3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/similarity_map_rf.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/stereo_annotation.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/images/substruct_search_parameters1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/index.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Avalon.pyAvalonTools.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Avalon.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AllChem.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Pairs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Sheridan.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Torsions.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.Utils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.AtomPairs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.BRICS.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.BuildFragmentCatalog.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.AlignDepict.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.BulkTester.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.DescriptorUtilities.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.SDFToCSV.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.TemplateExpand.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemicalFeatures.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ChemicalForceFields.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Crippen.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Descriptors.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Descriptors3D.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.IPythonConsole.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.MolDrawing.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.SimilarityMaps.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.aggCanvas.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.cairoCanvas.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.canvasbase.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.mplCanvas.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.qtCanvas.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2D.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.rdMolDraw2DQt.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Draw.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.AtomTypes.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.EState.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.EState_VSA.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.Fingerprinter.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EState.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EnumerateHeterocycles.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.EnumerateStereoisomers.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FastSDMolSupplier.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatFinderCLI.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapParser.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapPoint.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMapUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.FeatMaps.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FeatMaps.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Features.FeatDirUtilsRD.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Features.ShowFeats.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Features.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FilterCatalog.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.ClusterMols.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.DbFpSupplier.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.FingerprintMols.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.MolSimilarity.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.SimilarityScreener.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fingerprints.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.FraggleSim.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fraggle.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FragmentCatalog.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FragmentMatcher.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Fragments.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.FunctionalGroups.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.GraphDescriptors.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Graphs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Lipinski.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MACCSkeys.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MCS.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolCatalog.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.FingerprintUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_orig.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.Loader_sa.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolDb.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolKey.InchiInfo.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolKey.MolKey.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolKey.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rdMolStandardize.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolStandardize.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.MolSurf.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PandasTools.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PeriodicTable.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Generate.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Gobbi_Pharm2D.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Matcher.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.SigFactory.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.Utils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm2D.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.EmbedLib.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.ExcludedVolume.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.Pharmacophore.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Pharm3D.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PropertyMol.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.PyMol.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.QED.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Randomize.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Recap.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ReducedGraphs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.RegistrationHash.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SATIS.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SaltRemover.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.MurckoScaffold.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rdScaffoldNetwork.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Scaffolds.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.ShowMols.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.Enumerator.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.SimpleEnum.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.BuilderUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeAligner.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeBuilder.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.SubshapeObjects.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Subshape.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.DbMolSupplier.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.MolSupplier.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.Suppliers.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.TemplateAlign.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.TorsionFingerprints.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.fmcs.fmcs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.fmcs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.inchi.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdAbbreviations.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdCIPLabeler.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdChemReactions.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdChemicalFeatures.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdCoordGen.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDepictor.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDeprotect.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDetermineBonds.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdDistGeom.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdEHTTools.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdFMCS.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdFingerprintGenerator.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdForceFieldHelpers.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdFreeSASA.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMHFPFingerprint.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMMPA.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolAlign.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolCatalog.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolChemicalFeatures.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolDescriptors.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolEnumerator.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolHash.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolInterchange.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdMolTransforms.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdPartialCharges.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdRGroupDecomposition.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdReducedGraphs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdSLNParse.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdShapeHelpers.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdSubstructLibrary.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdTautomerQuery.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdchem.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdfiltercatalog.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdfragcatalog.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdinchi.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdmolfiles.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdmolops.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdqueries.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rdtrajectory.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Chem.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rdMetricMatrixCalc.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataManip.Metric.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataManip.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsemble.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.BitEnsembleDb.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.BitUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.LazySignature.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.TopNContainer.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.VectCollection.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.cDataStructs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DataStructs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbConnection.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbInfo.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbModule.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbReport.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbResultSet.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.DbUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.StorageUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Dbase.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DistanceGeometry.DistGeom.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.DistanceGeometry.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ForceField.rdForceField.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ForceField.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Geometry.rdGeometry.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Geometry.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.AnalyzeComposite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.BuildComposite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Butina.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.ClusterVis.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clustering.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Clusters.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Murtagh.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Resemblance.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.Standardize.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Cluster.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.AdjustComposite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.BayesComposite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.Composite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Composite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.CompositeRun.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.DataUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.FindQuantBounds.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.MLData.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.Quantize.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.SplitData.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.Stats.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.Transforms.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.cQuantize.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Data.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildQuantTree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.BuildSigTree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.CrossValidate.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.DecTree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.Forest.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.ID3.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.PruneTree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.QuantTree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.SigTree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.Tree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.TreeVis.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.DecTree.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.CompoundDescriptors.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Descriptors.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.MoleculeDescriptors.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.Parser.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Descriptors.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.EnrichPlot.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.GrowComposite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitClusterer.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.BitRank.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.entropy.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rdInfoTheory.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.InfoTheory.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.CrossValidate.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.DistFunctions.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNClassificationModel.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNModel.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.KNNRegressionModel.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.KNN.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.MLUtils.VoteImg.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.MLUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.MatOps.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.PackageUtils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.Packager.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ModelPackage.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.ClassificationModel.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.CrossValidate.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.NaiveBayes.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.ActFuncs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.CrossValidate.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.NetNode.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.Network.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.Trainers.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Neural.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.SLT.Risk.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.SLT.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Scoring.Scoring.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.Scoring.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.ScreenComposite.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.files.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.ML.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Numerics.rdAlignment.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.Numerics.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDConfig.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDLogger.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDPaths.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.RDRandom.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.SimDivFilters.SimilarityPickers.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.SimDivFilters.rdSimDivPickers.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.SimDivFilters.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.TestRunner.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Filter.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Node.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbMolSupply.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.DbPickleSupplier.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SDSupply.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsMolFilter.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmartsRemover.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesDupeFilter.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesOutput.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.SmilesSupply.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.NodeLib.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Output.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Supply.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.Transform.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.VLib.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.rdBase.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.six.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.cactvs.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.chemutils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.fileutils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.listutils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book/source/rdkit.utils.spiral.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/An_overview_of_the_RDKit_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Backwards_incompatible_changes_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Getting_Started_with_RDKit_in_Python_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Installation_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Makefile -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/RDKit_cookbook_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/Supplementary_Text_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/The_RDKit_Book_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/The_RDKit_database_cartridge_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/conf.py -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/index.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/introduction_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_10.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_11.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_12.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_13.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_14.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_15.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_16.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_17.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_18.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_19.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_2.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_20.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_21.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_22.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_23.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_24.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_25.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_26.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_27.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_28.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_29.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_3.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_30.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_31.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_32.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_33.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_34.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_35.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_36.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_37.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_38.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_39.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_4.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_40.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_41.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_42.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_43.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_44.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_45.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_46.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_47.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_48.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_49.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_5.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_50.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_51.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_52.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_53.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_54.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_55.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_56.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_57.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_58.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_59.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_6.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_60.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_61.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_62.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_7.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_8.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/supple_images/jp_supple_9.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Book_jp/terminology_jp.rst -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/CIPLabeling.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/Chem -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/FragmentCatalogs.html -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.signatures.ai -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.signatures.jpg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.triangles.ai -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/Chem/Pharm2D.triangles.jpg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/CodingStandards.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/EnhancedStereo.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/SGroups.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/gsocGeneralFileReader.md -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_abs_and_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_abs_and_expand.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_abs_or_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_and2_expand.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_cis_expand.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_and1_trans_expand.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_or1_cis_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_or1_or2_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Code/images/enhanced_stereo_or1_trans_base.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/logo.ai -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/logo.inkscape.svg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/logo.lrg.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/logo.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/logo_plain.inkscape.svg -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/logo_plain.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/wiki -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Images/wiki/morganfp_atomenv1.png -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/FingerprintGenerators.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/MolStandardize.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-DummyCores.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-GA.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-GenericCores.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-MutipleCores.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-RingSubstitution.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-StereoChemTest.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-Tests.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/RGroupDecomposition-example-lactam.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/Notebooks/compounds.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/doc/RDKit/Docs/RD.css -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/AtomAtomSimilarity -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/AtomAtomSimilarity/AtomAtomPathSimilarity.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CMakeLists.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/CalcLigRMSD.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/Examples_CalcLigRMSD.ipynb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/README.md -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/1C9_renamed.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/1d4i_BEG.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/3m11_AKI.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/3w2c_N15.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/4i23_1C9.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/4i24_1C9.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/4uzh_JVE.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/5dpv.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/5dt0.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/6c83.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/ACP_crystal_aligned_2.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/ACP_renamed.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/AKI_renamed.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/BEG_test.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/JVE_renamed.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/N15_renamed.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/SKE_crystal_aligned_1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/SKE_renamed.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/aurka_protein_2c6e.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/crystal_aligned.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_ACP_pH74_netcharge1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_AKI_pH74_netcharge1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_JVE_pH74_netcharge1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_N15_pH74_netcharge1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_2c6e_SKE_pH74_netcharge1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/docked_3w2p_1C9_pH74_netcharge1.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/data/lig_crystal_aligned.pdb -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/1C9.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/5dpv_complex.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/6c83_complex.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/AKI.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/BEG.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/JVE.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/CalcLigRMSD/figures/N15.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ChiralPairs -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ChiralPairs/ChiralDescriptors.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ChiralPairs/README.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/CMakeLists.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/ConformerParser.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/ConformerParser.h -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/CMakeLists.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/rdConformerParser.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/testConformerParser.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/Wrap/test_list.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/test.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/ConformerParser/test_list.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/README.md -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/cdk2.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/centroid.tsv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/clustered.tsv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/clustered_parse.tsv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/fastcluster.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/fp.tsv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata/cdk2.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata/converted.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Fastcluster/testdata/sdf2smi.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/README.md -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/data -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_act.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/data/CHEMBL2321810_scaffold.mol -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/freewilson.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/pytest.ini -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/requirements.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/setup.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/test -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/FreeWilson/test/test_freewilson.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Glare -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Glare/README.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/Glare/glare.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/IFG -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/IFG/README -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/IFG/ifg.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/LEF -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/LEF/AddLabels.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/LEF/ClusterFps.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/LEF/CreateFps.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/LEF/DistancePlot.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/LEF/DistancePredict.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/LEF/README.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/M_Kossner -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/M_Kossner/BaseFeatures_DIP2_NoMicrospecies.fdef -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/M_Kossner/Frames.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/M_Kossner/README -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/MolVS -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/MolVS/molvs_cli.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/FilterSet_NIBR2019_wPubChemExamples.html -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/README.md -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/SubstructureFilter_HitTriaging_wPubChemExamples.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/assignSubstructureFilters.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/examples -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/examples/chembl24_structs_randomtestSample_100_out.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NIBRSubstructureFilters/filterExamples.png -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NP_Score -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NP_Score/README -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NP_Score/npscorer.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/NP_Score/publicnp.model.gz -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/Makefile -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/PBFRDKit.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/PBFRDKit.h -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/README -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/demo.cpp -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/pbf.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/testData -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/testData/egfr.out -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/PBF/testData/egfr.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/README.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/__init__.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/identifyReactants.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/RxnRoleAssignment/utils.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/SA_Score -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/SA_Score/README -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/SA_Score/UnitTestSAScore.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/SA_Score/data -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/SA_Score/data/zim.100.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/SA_Score/fpscores.pkl.gz -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/SA_Score/sascorer.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/atomcontrib.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/cxn_tversky.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/data -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/data/ChEMBL_11265_actives.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/data/final_fraggle_results.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/data/fragmentation_tversky_out -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/data/query.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/data/query_fragmentation.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/fraggle.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/rdkit_tversky.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/fraggle/readme.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/README.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/cansmirk.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/create_mmp_db.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_cansmirks.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_smi.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_subs.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_subs_smarts.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_trans.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_input_trans_smarts.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_smi_output.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_output.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_subs_smart_output.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_output.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_db_search_trans_smarts_output.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_fragmented.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_default.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_maxheavy.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_maxratio.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_sym.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mmps_sym_maxheavy.csv -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_mol_trans_output.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_smiles_mol_trans.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_smirks.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_smirks_mol_trans.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/sample_transfroms.txt -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/data/simple.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/indexing.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/mol_transform.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/rfrag.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/search_mmp_db.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/test_list.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/mmpa/test_rfrag.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/pzc -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/pzc/p_con.html -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/pzc/p_con.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Contrib/pzc/readme.md -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/CreateDb.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/SearchDb.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/TestDbCLI.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/moe_like.dsc -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/testData -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/testData/README -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr.2.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr.smi -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/testData/bzr_q1.mol -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Projects/DbCLI/testData/pubchem.200.sdf -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Scripts -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Scripts/FeatFinderCLI.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Scripts/PythonFormat.py -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Scripts/README.md -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Scripts/create_deb_packages.sh -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/Scripts/test.sh -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/README -- Installing: /construction/science/rdkit/stage/usr/local/share/RDKit/license.txt -- Installing: /construction/science/rdkit/stage/usr/local/lib/cmake/rdkit/rdkit-targets.cmake -- Installing: /construction/science/rdkit/stage/usr/local/lib/cmake/rdkit/rdkit-targets-release.cmake -- Installing: /construction/science/rdkit/stage/usr/local/lib/cmake/rdkit/rdkit-config.cmake -- Installing: /construction/science/rdkit/stage/usr/local/lib/cmake/rdkit/rdkit-config-version.cmake -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/CoordGen.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdCoordGen.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRingDecomposerLib.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1.2023.03.2 -- Up-to-date: /construction/science/rdkit/stage/usr/local/lib/libRDKitRingDecomposerLib.so.1 -- Up-to-date: /construction/science/rdkit/stage/usr/local/lib/libRDKitRingDecomposerLib.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RingDecomposerLib.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitga.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitga.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitga.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDGeneral.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDGeneral.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDGeneral.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/Exceptions.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/BadFileException.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/BoostStartInclude.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/BoostEndInclude.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/Dict.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/FileParseException.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/Invariant.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDAny.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDValue.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDValue-doublemagic.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDValue-taggedunion.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDLog.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDProps.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDThreads.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/StreamOps.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/types.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/utils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/versions.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDConfig.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/LocaleSwitcher.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/Ranking.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hanoiSort.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/RDExportMacros.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/export.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/test.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/ConcurrentQueue.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hash -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hash/detail -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hash/detail/float_functions.hpp -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hash/detail/hash_float.hpp -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hash/extensions.hpp -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hash/hash.hpp -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDGeneral/hash/hash_fwd.hpp -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDBoost.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDBoost.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDBoost.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDBoost/Wrap.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDBoost/PySequenceHolder.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDBoost/list_indexing_suite.hpp -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDBoost/python.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDBoost/boost_numpy.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDBoost/python_streambuf.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/rdBase.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDStreams.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDStreams.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDStreams.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/RDStreams/streams.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDataStructs.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDataStructs.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDataStructs.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/base64.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/BitOps.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/BitVect.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/BitVects.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/BitVectUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/DatastructsException.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/DatastructsStreamOps.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/DiscreteDistMat.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/DiscreteValueVect.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/ExplicitBitVect.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/SparseBitVect.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/SparseIntVect.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/FPBReader.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataStructs/MultiFPBReader.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataStructs/cDataStructs.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDGeometryLib.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDGeometryLib.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRDGeometryLib.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/Grid3D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/GridUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/point.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/Transform2D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/Transform3D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/Transform.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/UniformGrid3D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Geometry/Utils.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Geometry/rdGeometry.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/Matrix.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/SquareMatrix.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/SymmMatrix.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/Vector.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/Conrec.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitAlignment.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitAlignment.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitAlignment.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/Alignment/AlignPoints.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Numerics/rdAlignment.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitEigenSolvers.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitEigenSolvers.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitEigenSolvers.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/EigenSolvers/PowerEigenSolver.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitOptimizer.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitOptimizer.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitOptimizer.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Numerics/Optimizer/BFGSOpt.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitForceField.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitForceField.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitForceField.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/Contrib.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/ForceField.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/AngleBend.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/BondStretch.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/Contribs.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/DistanceConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/AngleConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/TorsionConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/PositionConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/Nonbonded.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/Params.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/Inversion.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/UFF/TorsionAngle.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/AngleBend.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/BondStretch.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/StretchBend.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/OopBend.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionAngle.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/Nonbonded.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/Contribs.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/DistanceConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/AngleConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/TorsionConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/PositionConstraint.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ForceField/MMFF/Params.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ForceField/rdForceField.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDistGeometry.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDistGeometry.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDistGeometry.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DistGeom/BoundsMatrix.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DistGeom/ChiralSet.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DistGeom/ChiralViolationContrib.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DistGeom/DistGeomUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DistGeom/DistViolationContrib.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DistGeom/FourthDimContrib.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DistGeom/TriangleSmooth.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DistanceGeometry/DistGeom.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitCatalogs.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitCatalogs.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitCatalogs.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Catalogs/CatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Catalogs/Catalog.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Catalogs/CatalogParams.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitGraphMol.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitGraphMol.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitGraphMol.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Atom.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/atomic_data.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/AtomIterators.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Bond.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/BondIterators.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Canon.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Chirality.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Conformer.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/details.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/GraphMol.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolOps.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolPickler.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/PeriodicTable.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/QueryAtom.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/QueryBond.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/QueryOps.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/RDKitBase.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/RDKitQueries.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Resonance.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/RingInfo.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Rings.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ROMol.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/RWMol.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SanitException.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SubstanceGroup.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/StereoGroup.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MonomerInfo.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/new_canon.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolBundle.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSmilesParse.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSmilesParse.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSmilesParse.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SmilesParse/primes.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmartsWrite.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParse.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesParseOps.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SmilesParse/SmilesWrite.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDepictor.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDepictor.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDepictor.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Depictor/DepictUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Depictor/EmbeddedFrag.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Depictor/RDDepictor.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDepictor.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFileParsers.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFileParsers.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFileParsers.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/CDXMLParser.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParsers.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/FileParserUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolFileStereochem.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolSupplier.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/MolWriters.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceParsers.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/SequenceWriters.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/GeneralFileReader.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedMolSupplier.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSmilesMolSupplier.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/MultithreadedSDMolSupplier.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FileParsers/PNGParser.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubstructMatch.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubstructMatch.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubstructMatch.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructMatch.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Substruct/SubstructUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitGenericGroups.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitGenericGroups.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitGenericGroups.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/GenericGroups/GenericGroups.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemReactions.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemReactions.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemReactions.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Reaction.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionParser.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionPickler.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionFingerprints.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/ReactionRunner.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/PreprocessRxn.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/SanitizeRxn.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/Enumerate.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateBase.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerateTypes.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationPickler.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/EnumerationStrategyBase.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/CartesianProduct.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSample.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemReactions/Enumerate/RandomSampleAllBBs.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdChemReactions.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemTransforms.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemTransforms.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemTransforms.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/ChemTransforms.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ChemTransforms/MolFragmenter.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitTautomerQuery.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitTautomerQuery.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitTautomerQuery.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/TautomerQuery/TautomerQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdTautomerQuery.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubgraphs.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubgraphs.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubgraphs.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Subgraphs/Subgraphs.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Subgraphs/SubgraphUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFilterCatalog.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFilterCatalog.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFilterCatalog.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterCatalog.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatcherBase.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FilterMatchers.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FilterCatalog/FunctionalGroupHierarchy.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdfiltercatalog.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFragCatalog.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFragCatalog.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFragCatalog.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatalogUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatGenerator.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragCatParams.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FragCatalog/FragFPGenerator.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdfragcatalog.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDescriptors.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDescriptors.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDescriptors.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/Crippen.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/BCUT.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/Lipinski.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolSurf.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/ConnectivityDescriptors.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/MQN.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/RegisterDescriptor.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/Property.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR2D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/Data3Ddescriptors.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolData3Ddescriptors.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/USRDescriptor.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/AtomFeat.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/OxidationNumbers.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/MolDescriptors3D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/EEM.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/PBF.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/PMI.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/AUTOCORR3D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/RDF.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/MORSE.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/GETAWAY.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/WHIM.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Descriptors/CoulombMat.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolDescriptors.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFingerprints.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFingerprints.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFingerprints.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairs.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/Fingerprints.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganFingerprints.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MACCS.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MHFP.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintGenerator.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/AtomPairGenerator.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/MorganGenerator.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/RDKitFPGenerator.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/TopologicalTorsionGenerator.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Fingerprints/FingerprintUtil.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdFingerprintGenerator.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMHFPFingerprint.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitPartialCharges.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitPartialCharges.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitPartialCharges.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerCharges.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/PartialCharges/GasteigerParams.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdPartialCharges.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolTransforms.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolTransforms.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolTransforms.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolTransforms/MolTransforms.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolTransforms.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitForceFieldHelpers.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitForceFieldHelpers.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/FFConvenience.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/AtomTyper.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/Builder.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/UFF/UFF.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/AtomTyper.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/Builder.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/MMFF/MMFF.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionAngleM6.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ForceFieldHelpers/CrystalFF/TorsionPreferences.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdForceFieldHelpers.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDistGeomHelpers.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDistGeomHelpers.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/BoundsMatrixBuilder.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/DistGeomHelpers/Embedder.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDistGeom.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolAlign.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolAlign.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolAlign.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitO3AAlign.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitO3AAlign.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitO3AAlign.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolAlign/AlignMolecules.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolAlign/O3AAlignMolecules.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolAlign.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolChemicalFeatures.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolChemicalFeatures.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/FeatureParser.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureFactory.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeatureDef.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolChemicalFeatures/MolChemicalFeature.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolChemicalFeatures.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitShapeHelpers.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitShapeHelpers.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitShapeHelpers.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeEncoder.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ShapeHelpers/ShapeUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdShapeHelpers.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolCatalog.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolCatalog.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolCatalog.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalog.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolCatalog/MolCatalogParams.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolCatalog.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2D.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DSVG.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2Dwx.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DJS.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolDraw2D/MolDraw2DHelpers.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolDraw2D.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolDraw2D.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolDraw2D.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Draw/rdMolDraw2D.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFMCS.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFMCS.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitFMCS.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FMCS/FMCS.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/FMCS/Graph.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdFMCS.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolHash.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolHash.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolHash.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolHash/MolHash.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolHash/nmmolhash.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolHash.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMMPA.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMMPA.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMMPA.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MMPA/MMPA.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMMPA.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitCIPLabeler.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitCIPLabeler.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitCIPLabeler.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/CIPLabeler/CIPLabeler.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/CIPLabeler/TooManyNodesException.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdCIPLabeler.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDeprotect.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDeprotect.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitDeprotect.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Deprotect/Deprotect.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdDeprotect.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitReducedGraphs.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitReducedGraphs.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitReducedGraphs.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ReducedGraphs/ReducedGraphs.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdReducedGraphs.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitTrajectory.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitTrajectory.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitTrajectory.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Trajectory/Snapshot.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Trajectory/Trajectory.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubstructLibrary.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubstructLibrary.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSubstructLibrary.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrary.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/SubstructLibrarySerialization.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SubstructLibrary/PatternFactory.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdSubstructLibrary.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRGroupDecomposition.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitRGroupDecomposition.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecomp.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/RGroupDecomposition/RGroupDecompParams.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdRGroupDecomposition.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolInterchange.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolInterchange.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolInterchange.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolInterchange/MolInterchange.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolInterchange/details.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolInterchange.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSLNParse.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSLNParse.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSLNParse.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNAttribs.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParse.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/SLNParse/SLNParseOps.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdSLNParse.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdchem.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdmolops.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdqueries.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdmolfiles.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdtrajectory.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolStandardize.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolStandardize.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolStandardize.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/MolStandardize.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Metal.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Normalize.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Validate.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Charge.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Tautomer.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/Fragment.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogParams.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/FragmentCatalog/FragmentCatalogUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogParams.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/AcidBaseCatalog/AcidBaseCatalogUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogParams.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TransformCatalog/TransformCatalogUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogEntry.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogParams.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolStandardize/TautomerCatalog/TautomerCatalogUtils.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/MolStandardize/rdMolStandardize.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitScaffoldNetwork.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitScaffoldNetwork.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/ScaffoldNetwork/ScaffoldNetwork.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/Scaffolds/rdScaffoldNetwork.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolEnumerator.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolEnumerator.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitMolEnumerator.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/MolEnumerator.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/MolEnumerator/LinkNode.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdMolEnumerator.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitAbbreviations.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitAbbreviations.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitAbbreviations.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/GraphMol/Abbreviations/Abbreviations.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdAbbreviations.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/AndQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/EqualityQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/GreaterEqualQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/GreaterQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/LessEqualQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/LessQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/NullQueryAlgebra.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/OrQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/Query.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/QueryObjects.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/RangeQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/SetQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Query/XOrQuery.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/Features/Feature.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricFuncs.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/DataManip/MetricMatrixCalc/MetricMatrixCalc.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/DataManip/Metric/rdMetricMatrixCalc.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSimDivPickers.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSimDivPickers.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitSimDivPickers.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/SimDivPickers/DistPicker.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/SimDivPickers/LeaderPicker.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/SimDivPickers/HierarchicalClusterPicker.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/SimDivPickers/MaxMinPicker.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/SimDivFilters/rdSimDivPickers.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKithc.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKithc.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKithc.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Cluster/Clustering.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitInfoTheory.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitInfoTheory.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitInfoTheory.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/InfoTheory/rdInfoTheory.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/ML/Data/cQuantize.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemicalFeatures.so.1.2023.03.2 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemicalFeatures.so.1 -- Installing: /construction/science/rdkit/stage/usr/local/lib/libRDKitChemicalFeatures.so -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ChemicalFeatures/ChemicalFeature.h -- Installing: /construction/science/rdkit/stage/usr/local/include/rdkit/ChemicalFeatures/FreeChemicalFeature.h -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/Chem/rdChemicalFeatures.so -- Installing: /construction/science/rdkit/stage/usr/local/lib/python3.9/site-packages/rdkit/RDPaths.py ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libRDKitChemReactions.so.1.2023.03.2 is linked to /usr/local/lib/libicudata.so.73 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicudata.so:devel/icu Error: /usr/local/lib/libRDKitChemReactions.so.1.2023.03.2 is linked to /usr/local/lib/libicui18n.so.73 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicui18n.so:devel/icu Error: /usr/local/lib/libRDKitChemReactions.so.1.2023.03.2 is linked to /usr/local/lib/libicuuc.so.73 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicuuc.so:devel/icu Error: /usr/local/lib/libRDKitMolDraw2D.so.1.2023.03.2 is linked to /usr/local/lib/libpng16.so.16 from graphics/png but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpng16.so:graphics/png Error: /usr/local/lib/libRDKitMolDraw2D.so.1.2023.03.2 is linked to /usr/local/lib/libbrotlidec.so.1 from archivers/brotli but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libbrotlidec.so:archivers/brotli Error: /usr/local/lib/libRDKitMolDraw2D.so.1.2023.03.2 is linked to /usr/local/lib/libbrotlicommon.so.1 from archivers/brotli but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libbrotlicommon.so:archivers/brotli Error: /usr/local/lib/libRDKitRDBoost.so.1.2023.03.2 is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:35 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for rdkit-2023.03.2 file sizes/checksums [1762]: 0% file sizes/checksums [1762]: 5% file sizes/checksums [1762]: 11% file sizes/checksums [1762]: 17% file sizes/checksums [1762]: 22% file sizes/checksums [1762]: 28% file sizes/checksums [1762]: 34% file sizes/checksums [1762]: 39% file sizes/checksums [1762]: 45% file sizes/checksums [1762]: 51% file sizes/checksums [1762]: 56% file sizes/checksums [1762]: 62% file sizes/checksums [1762]: 68% file sizes/checksums [1762]: 73% file sizes/checksums [1762]: 79% file sizes/checksums [1762]: 85% file sizes/checksums [1762]: 90% file sizes/checksums [1762]: 96% file sizes/checksums [1762]: 100% Service unavailablepacking files [1762]: 0% packing files [1762]: 5% packing files [1762]: 11% packing files [1762]: 17% packing files [1762]: 22% packing files [1762]: 28% packing files [1762]: 34% packing files [1762]: 39% packing files [1762]: 45% packing files [1762]: 51% packing files [1762]: 56% packing files [1762]: 62% packing files [1762]: 68% packing files [1762]: 73% packing files [1762]: 79% packing files [1762]: 85% packing files [1762]: 90% packing files [1762]: 96% packing files [1762]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:10 TOTAL TIME 00:12:42