------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/py-scikit-learn XDG_CONFIG_HOME=/construction/science/py-scikit-learn XDG_CACHE_HOME=/construction/science/py-scikit-learn/.cache HOME=/construction/science/py-scikit-learn TMPDIR="/tmp" PATH=/construction/science/py-scikit-learn/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-scikit-learn/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/construction/science/py-scikit-learn XDG_CONFIG_HOME=/construction/science/py-scikit-learn XDG_CACHE_HOME=/construction/science/py-scikit-learn/.cache HOME=/construction/science/py-scikit-learn TMPDIR="/tmp" PATH=/construction/science/py-scikit-learn/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-scikit-learn/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-scikit-learn/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/scikit-learn" EXAMPLESDIR="share/examples/scikit-learn" DATADIR="share/scikit-learn" WWWDIR="www/scikit-learn" ETCDIR="etc/scikit-learn" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/scikit-learn DOCSDIR=/usr/local/share/doc/scikit-learn EXAMPLESDIR=/usr/local/share/examples/scikit-learn WWWDIR=/usr/local/www/scikit-learn ETCDIR=/usr/local/etc/scikit-learn SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-joblib-1.1.0.pkg Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/blas-3.11.0_1.pkg Installing /packages/All/py39-scipy-1.10.1_1.pkg Installing /packages/All/py39-threadpoolctl-3.1.0_1.pkg Installing /packages/All/py39-cython-0.29.35.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-scikit-learn-1.3.0 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-scikit-learn-1.3.0 for building => SHA256 Checksum OK for scikit-learn-1.3.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-scikit-learn-1.3.0 for building ===> Extracting for py39-scikit-learn-1.3.0 => SHA256 Checksum OK for scikit-learn-1.3.0.tar.gz. Extracted Memory Use: 22.79M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-scikit-learn-1.3.0 ===> Applying dragonfly patches for py39-scikit-learn-1.3.0 from /xports/science/py-scikit-learn/dragonfly SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-scikit-learn-1.3.0 depends on package: py39-joblib>0 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-scipy>=1.3.2 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-threadpoolctl>=0 - found ===> py39-scikit-learn-1.3.0 depends on executable: gfortran12 - found ===> py39-scikit-learn-1.3.0 depends on executable: cython-3.9 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/bin/as - found ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-scikit-learn-1.3.0 depends on package: py39-joblib>0 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-scipy>=1.3.2 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-threadpoolctl>=0 - found ===> py39-scikit-learn-1.3.0 depends on executable: gfortran12 - found ===> py39-scikit-learn-1.3.0 depends on executable: cython-3.9 - found ===> py39-scikit-learn-1.3.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/bin/as - found ===> py39-scikit-learn-1.3.0 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-scikit-learn-1.3.0 Partial import of sklearn during the build process. Compiling sklearn/__check_build/_check_build.pyx because it changed. Compiling sklearn/_isotonic.pyx because it changed. Compiling sklearn/_loss/_loss.pyx because it changed. Compiling sklearn/cluster/_dbscan_inner.pyx because it changed. Compiling sklearn/cluster/_hierarchical_fast.pyx because it changed. Compiling sklearn/cluster/_k_means_common.pyx because it changed. Compiling sklearn/cluster/_k_means_lloyd.pyx because it changed. Compiling sklearn/cluster/_k_means_elkan.pyx because it changed. Compiling sklearn/cluster/_k_means_minibatch.pyx because it changed. Compiling sklearn/cluster/_hdbscan/_linkage.pyx because it changed. Compiling sklearn/cluster/_hdbscan/_reachability.pyx because it changed. Compiling sklearn/cluster/_hdbscan/_tree.pyx because it changed. Compiling sklearn/datasets/_svmlight_format_fast.pyx because it changed. Compiling sklearn/decomposition/_online_lda_fast.pyx because it changed. Compiling sklearn/decomposition/_cdnmf_fast.pyx because it changed. Compiling sklearn/ensemble/_gradient_boosting.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/_gradient_boosting.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/histogram.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/splitting.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/_binning.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/_predictor.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/_bitset.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/common.pyx because it changed. Compiling sklearn/ensemble/_hist_gradient_boosting/utils.pyx because it changed. Compiling sklearn/feature_extraction/_hashing_fast.pyx because it changed. Compiling sklearn/linear_model/_cd_fast.pyx because it changed. Compiling sklearn/linear_model/_sgd_fast.pyx because it changed. Compiling sklearn/linear_model/_sag_fast.pyx because it changed. Compiling sklearn/manifold/_utils.pyx because it changed. Compiling sklearn/manifold/_barnes_hut_tsne.pyx because it changed. Compiling sklearn/metrics/_pairwise_fast.pyx because it changed. Compiling sklearn/metrics/_dist_metrics.pyx because it changed. Compiling sklearn/metrics/cluster/_expected_mutual_info_fast.pyx because it changed. Compiling sklearn/metrics/_pairwise_distances_reduction/_datasets_pair.pyx because it changed. Compiling sklearn/metrics/_pairwise_distances_reduction/_middle_term_computer.pyx because it changed. Compiling sklearn/metrics/_pairwise_distances_reduction/_base.pyx because it changed. Compiling sklearn/metrics/_pairwise_distances_reduction/_argkmin.pyx because it changed. Compiling sklearn/metrics/_pairwise_distances_reduction/_argkmin_classmode.pyx because it changed. Compiling sklearn/metrics/_pairwise_distances_reduction/_radius_neighbors.pyx because it changed. Compiling sklearn/preprocessing/_csr_polynomial_expansion.pyx because it changed. Compiling sklearn/preprocessing/_target_encoder_fast.pyx because it changed. Compiling sklearn/neighbors/_ball_tree.pyx because it changed. Compiling sklearn/neighbors/_kd_tree.pyx because it changed. Compiling sklearn/neighbors/_partition_nodes.pyx because it changed. Compiling sklearn/neighbors/_quad_tree.pyx because it changed. Compiling sklearn/svm/_newrand.pyx because it changed. Compiling sklearn/svm/_libsvm.pyx because it changed. Compiling sklearn/svm/_liblinear.pyx because it changed. Compiling sklearn/svm/_libsvm_sparse.pyx because it changed. Compiling sklearn/tree/_tree.pyx because it changed. Compiling sklearn/tree/_splitter.pyx because it changed. Compiling sklearn/tree/_criterion.pyx because it changed. Compiling sklearn/tree/_utils.pyx because it changed. Compiling sklearn/utils/sparsefuncs_fast.pyx because it changed. Compiling sklearn/utils/_cython_blas.pyx because it changed. Compiling sklearn/utils/arrayfuncs.pyx because it changed. Compiling sklearn/utils/murmurhash.pyx because it changed. Compiling sklearn/utils/_fast_dict.pyx because it changed. Compiling sklearn/utils/_openmp_helpers.pyx because it changed. Compiling sklearn/utils/_seq_dataset.pyx because it changed. Compiling sklearn/utils/_weight_vector.pyx because it changed. Compiling sklearn/utils/_random.pyx because it changed. Compiling sklearn/utils/_logistic_sigmoid.pyx because it changed. Compiling sklearn/utils/_typedefs.pyx because it changed. Compiling sklearn/utils/_heap.pyx because it changed. Compiling sklearn/utils/_sorting.pyx because it changed. Compiling sklearn/utils/_vector_sentinel.pyx because it changed. Compiling sklearn/utils/_isfinite.pyx because it changed. [ 1/68] Cythonizing sklearn/__check_build/_check_build.pyx [ 2/68] Cythonizing sklearn/_isotonic.pyx [ 3/68] Cythonizing sklearn/_loss/_loss.pyx [ 4/68] Cythonizing sklearn/cluster/_dbscan_inner.pyx [ 5/68] Cythonizing sklearn/cluster/_hdbscan/_linkage.pyx [ 6/68] Cythonizing sklearn/cluster/_hdbscan/_reachability.pyx [ 7/68] Cythonizing sklearn/cluster/_hdbscan/_tree.pyx [ 8/68] Cythonizing sklearn/cluster/_hierarchical_fast.pyx [ 9/68] Cythonizing sklearn/cluster/_k_means_common.pyx [10/68] Cythonizing sklearn/cluster/_k_means_elkan.pyx [11/68] Cythonizing sklearn/cluster/_k_means_lloyd.pyx [12/68] Cythonizing sklearn/cluster/_k_means_minibatch.pyx [14/68] Cythonizing sklearn/decomposition/_cdnmf_fast.pyx [15/68] Cythonizing sklearn/decomposition/_online_lda_fast.pyx [16/68] Cythonizing sklearn/ensemble/_gradient_boosting.pyx [17/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/_binning.pyx [13/68] Cythonizing sklearn/datasets/_svmlight_format_fast.pyx [18/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/_bitset.pyx [19/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/_gradient_boosting.pyx [20/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/_predictor.pyx [22/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/histogram.pyx [21/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/common.pyx [24/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/utils.pyx [25/68] Cythonizing sklearn/feature_extraction/_hashing_fast.pyx [26/68] Cythonizing sklearn/linear_model/_cd_fast.pyx [27/68] Cythonizing sklearn/linear_model/_sag_fast.pyx [28/68] Cythonizing sklearn/linear_model/_sgd_fast.pyx [29/68] Cythonizing sklearn/manifold/_barnes_hut_tsne.pyx [30/68] Cythonizing sklearn/manifold/_utils.pyx [23/68] Cythonizing sklearn/ensemble/_hist_gradient_boosting/splitting.pyx [31/68] Cythonizing sklearn/metrics/_dist_metrics.pyx [32/68] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_argkmin.pyx [33/68] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_argkmin_classmode.pyx [34/68] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_base.pyx [35/68] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_datasets_pair.pyx [36/68] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_middle_term_computer.pyx [37/68] Cythonizing sklearn/metrics/_pairwise_distances_reduction/_radius_neighbors.pyx [38/68] Cythonizing sklearn/metrics/_pairwise_fast.pyx [39/68] Cythonizing sklearn/metrics/cluster/_expected_mutual_info_fast.pyx [40/68] Cythonizing sklearn/neighbors/_ball_tree.pyx [41/68] Cythonizing sklearn/neighbors/_kd_tree.pyx [42/68] Cythonizing sklearn/neighbors/_partition_nodes.pyx [43/68] Cythonizing sklearn/neighbors/_quad_tree.pyx [44/68] Cythonizing sklearn/preprocessing/_csr_polynomial_expansion.pyx [45/68] Cythonizing sklearn/preprocessing/_target_encoder_fast.pyx [46/68] Cythonizing sklearn/svm/_liblinear.pyx [47/68] Cythonizing sklearn/svm/_libsvm.pyx [48/68] Cythonizing sklearn/svm/_libsvm_sparse.pyx [49/68] Cythonizing sklearn/svm/_newrand.pyx [50/68] Cythonizing sklearn/tree/_criterion.pyx [51/68] Cythonizing sklearn/tree/_splitter.pyx [52/68] Cythonizing sklearn/tree/_tree.pyx [53/68] Cythonizing sklearn/tree/_utils.pyx [54/68] Cythonizing sklearn/utils/_cython_blas.pyx [55/68] Cythonizing sklearn/utils/_fast_dict.pyx [56/68] Cythonizing sklearn/utils/_heap.pyx [57/68] Cythonizing sklearn/utils/_isfinite.pyx [58/68] Cythonizing sklearn/utils/_logistic_sigmoid.pyx [59/68] Cythonizing sklearn/utils/_openmp_helpers.pyx [60/68] Cythonizing sklearn/utils/_random.pyx [61/68] Cythonizing sklearn/utils/_seq_dataset.pyx [62/68] Cythonizing sklearn/utils/_sorting.pyx [63/68] Cythonizing sklearn/utils/_typedefs.pyx [64/68] Cythonizing sklearn/utils/_vector_sentinel.pyx [65/68] Cythonizing sklearn/utils/_weight_vector.pyx [66/68] Cythonizing sklearn/utils/arrayfuncs.pyx [67/68] Cythonizing sklearn/utils/murmurhash.pyx [68/68] Cythonizing sklearn/utils/sparsefuncs_fast.pyx Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Truth-testing Python object not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Calling gil-requiring function not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:24: Accessing Python attribute not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:19: Accessing Python global or builtin not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:30: Constructing Python tuple not allowed without gil Error compiling Cython file: ------------------------------------------------------------ ... lambda_ = ( y_variance * counts[cat_idx] / (y_variance * counts[cat_idx] + sum_of_squared_diffs[cat_idx] / counts[cat_idx]) ) if cmath.isnan(lambda_): ^ ------------------------------------------------------------ sklearn/preprocessing/_target_encoder_fast.pyx:157:31: Converting to Python object not allowed without gil Traceback (most recent call last): File "/usr/local/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1262, in cythonize_one_helper return cythonize_one(*m) File "/usr/local/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1238, in cythonize_one raise CompileError(None, pyx_file) Cython.Compiler.Errors.CompileError: sklearn/preprocessing/_target_encoder_fast.pyx multiprocessing.pool.RemoteTraceback: """ Traceback (most recent call last): File "/usr/local/lib/python3.9/multiprocessing/pool.py", line 125, in worker result = (True, func(*args, **kwds)) File "/usr/local/lib/python3.9/multiprocessing/pool.py", line 48, in mapstar return list(map(*args)) File "/usr/local/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1262, in cythonize_one_helper return cythonize_one(*m) File "/usr/local/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1238, in cythonize_one raise CompileError(None, pyx_file) Cython.Compiler.Errors.CompileError: sklearn/preprocessing/_target_encoder_fast.pyx """ The above exception was the direct cause of the following exception: Traceback (most recent call last): File "", line 1, in File "setup.py", line 626, in setup_package() File "setup.py", line 620, in setup_package metadata["ext_modules"] = configure_extension_modules() File "setup.py", line 554, in configure_extension_modules return cythonize_extensions(cython_exts) File "/construction/science/py-scikit-learn/scikit-learn-1.3.0/sklearn/_build_utils/__init__.py", line 80, in cythonize_extensions return cythonize( File "/usr/local/lib/python3.9/site-packages/Cython/Build/Dependencies.py", line 1106, in cythonize result.get(99999) # seconds File "/usr/local/lib/python3.9/multiprocessing/pool.py", line 771, in get raise self._value Cython.Compiler.Errors.CompileError: sklearn/preprocessing/_target_encoder_fast.pyx *** Error code 1 Stop. make: stopped in /xports/science/py-scikit-learn FAILED 00:00:25