------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/py-pyprecice XDG_CONFIG_HOME=/construction/science/py-pyprecice XDG_CACHE_HOME=/construction/science/py-pyprecice/.cache HOME=/construction/science/py-pyprecice TMPDIR="/tmp" PATH=/construction/science/py-pyprecice/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-pyprecice/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-pyprecice XDG_CONFIG_HOME=/construction/science/py-pyprecice XDG_CACHE_HOME=/construction/science/py-pyprecice/.cache HOME=/construction/science/py-pyprecice TMPDIR="/tmp" PATH=/construction/science/py-pyprecice/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-pyprecice/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-pyprecice/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pyprecice" EXAMPLESDIR="share/examples/pyprecice" DATADIR="share/pyprecice" WWWDIR="www/pyprecice" ETCDIR="etc/pyprecice" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pyprecice DOCSDIR=/usr/local/share/doc/pyprecice EXAMPLESDIR=/usr/local/share/examples/pyprecice WWWDIR=/usr/local/www/pyprecice ETCDIR=/usr/local/etc/pyprecice SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/libpciaccess-0.17.pkg Installing /packages/All/level-zero-1.12.0.pkg Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/hwloc2-2.8.0.pkg Installing /packages/All/libltdl-2.4.7.pkg Installing /packages/All/libevent-2.1.12.pkg Installing /packages/All/libgpg-error-1.47.pkg Installing /packages/All/libgcrypt-1.10.2.pkg Installing /packages/All/munge-0.5.15.pkg Installing /packages/All/openmpi-4.1.5_1.pkg ===== Message from openmpi-4.1.5_1: -- ===> NOTICE: The openmpi port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/py39-mpi4py-3.1.4_1.pkg Installing /packages/All/pkgconf-1.8.1,1.pkg Installing /packages/All/py39-pkgconfig-1.5.5_1,1.pkg Installing /packages/All/py39-cython-0.29.35.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/icu-73.2,1.pkg Installing /packages/All/boost-libs-1.82.0_1.pkg ===== Message from boost-libs-1.82.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/json-c-0.16.pkg Installing /packages/All/libsysinfo-0.0.3_2.pkg Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/hdf5-1.12.2_2,1.pkg Installing /packages/All/libedit-3.1.20221030,1.pkg Installing /packages/All/lua54-5.4.6.pkg Installing /packages/All/slurm-wlm-20.02.7_3.pkg ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. ===== Message from slurm-wlm-20.02.7_3: -- ===> NOTICE: The slurm-wlm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libepoll-shim-0.0.20230411.pkg Installing /packages/All/bash-5.2.15.pkg Installing /packages/All/perl5-5.32.1_3.pkg Installing /packages/All/mpich-3.4.3_2.pkg ===== Message from mpich-3.4.3_2: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/precice-2.5.0_3.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:21 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/sbin/pkg - found => precice-python-bindings-v2.5.0.2_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/precice/python-bindings/tar.gz/v2.5.0.2?dummy=/precice-python-bindings-v2.5.0.2_GH0.tar.gz fetch: https://codeload.github.com/precice/python-bindings/tar.gz/v2.5.0.2?dummy=/precice-python-bindings-v2.5.0.2_GH0.tar.gz: size unknown fetch: https://codeload.github.com/precice/python-bindings/tar.gz/v2.5.0.2?dummy=/precice-python-bindings-v2.5.0.2_GH0.tar.gz: size of remote file is not known precice-python-bindings-v2.5.0.2_GH0.tar.gz 0 B 0 Bps precice-python-bindings-v2.5.0.2_GH0.tar.gz 56 kB 479 kBps 00s ===> Fetching all distfiles required by py39-pyprecice-2.5.0.2 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-pyprecice-2.5.0.2 for building => SHA256 Checksum OK for precice-python-bindings-v2.5.0.2_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-pyprecice-2.5.0.2 for building ===> Extracting for py39-pyprecice-2.5.0.2 => SHA256 Checksum OK for precice-python-bindings-v2.5.0.2_GH0.tar.gz. Extracted Memory Use: 0.36M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-pyprecice-2.5.0.2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-mpi4py>0 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-pkgconfig>0 - found ===> py39-pyprecice-2.5.0.2 depends on package: pkgconf>=1.3.0_1 - found ===> py39-pyprecice-2.5.0.2 depends on executable: cython-3.9 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/bin/python3.9 - found ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on shared library: libprecice.so - found (/usr/local/lib/libprecice.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-mpi4py>0 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-pkgconfig>0 - found ===> py39-pyprecice-2.5.0.2 depends on package: pkgconf>=1.3.0_1 - found ===> py39-pyprecice-2.5.0.2 depends on executable: cython-3.9 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/bin/python3.9 - found ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/bin/ccache - found ===> py39-pyprecice-2.5.0.2 depends on shared library: libprecice.so - found (/usr/local/lib/libprecice.so) ===> Configuring for py39-pyprecice-2.5.0.2 setup.py:11: UserWarning: It looks like you are not using pip for installation. Installing the package via 'pip3 install --user .' is recommended. You can still use 'python3 setup.py install --user', if you want and if the bindings work correctly, you do not have to worry. However, if you face problems during installation or running pyprecice, this means that you have to make sure that all dependencies are installed correctly and repeat the installation of pyprecice. Refer to pyproject.toml for a list of dependencies. warnings.warn( /usr/local/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v2.5.0.2' to '2.5.0.2' warnings.warn(tmpl.format(**locals())) running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-pyprecice-2.5.0.2 setup.py:11: UserWarning: It looks like you are not using pip for installation. Installing the package via 'pip3 install --user .' is recommended. You can still use 'python3 setup.py install --user', if you want and if the bindings work correctly, you do not have to worry. However, if you face problems during installation or running pyprecice, this means that you have to make sure that all dependencies are installed correctly and repeat the installation of pyprecice. Refer to pyproject.toml for a list of dependencies. warnings.warn( /usr/local/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v2.5.0.2' to '2.5.0.2' warnings.warn(tmpl.format(**locals())) running build running build_py creating build creating build/lib creating build/lib/precice copying precice/__init__.py -> build/lib/precice copying precice/_version.py -> build/lib/precice UPDATING build/lib/precice/_version.py set build/lib/precice/_version.py to 'v2.5.0.2' SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-pyprecice-2.5.0.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-mpi4py>0 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-pyprecice-2.5.0.2 ===> py39-pyprecice-2.5.0.2 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-mpi4py>0 - found ===> py39-pyprecice-2.5.0.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyprecice-2.5.0.2 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list setup.py:11: UserWarning: It looks like you are not using pip for installation. Installing the package via 'pip3 install --user .' is recommended. You can still use 'python3 setup.py install --user', if you want and if the bindings work correctly, you do not have to worry. However, if you face problems during installation or running pyprecice, this means that you have to make sure that all dependencies are installed correctly and repeat the installation of pyprecice. Refer to pyproject.toml for a list of dependencies. warnings.warn( /usr/local/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v2.5.0.2' to '2.5.0.2' warnings.warn(tmpl.format(**locals())) running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( Compiling /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.pyx because it changed. [1/1] Cythonizing /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.pyx warning: cyprecice/cyprecice.pyx:1230:61: local variable '_value' referenced before assignment warning: cyprecice/cyprecice.pyx:1232:81: local variable '_value' referenced before assignment warning: cyprecice/cyprecice.pyx:1234:15: local variable '_value' referenced before assignment running build running build_py creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/precice copying precice/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/precice copying precice/_version.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/precice UPDATING build/lib.dragonfly-6.5-x86_64-cpython-39/precice/_version.py set build/lib.dragonfly-6.5-x86_64-cpython-39/precice/_version.py to 'v2.5.0.2' running build_ext building 'cyprecice' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-pyprecice creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-pyprecice/python-bindings-2.5.0.2 creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -I/usr/local/include/python3.9 -c /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.o -std=c++11 -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:787: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp: In function 'PyObject* __pyx_pf_9cyprecice_9Interface_18is_read_data_available(__pyx_obj_9cyprecice_Interface*)': /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:3663:80: warning: 'bool precice::SolverInterface::isReadDataAvailable() const' is deprecated: Will be removed in 3.0.0. See https://github.com/precice/precice/issues/1223 and comment, if you need this function. [-Wdeprecated-declarations] __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_v_self->thisptr->isReadDataAvailable()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 245, __pyx_L1_error) ^ In file included from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:814: /usr/local/include/precice/SolverInterface.hpp:244:143: note: declared here [[deprecated("Will be removed in 3.0.0. See https://github.com/precice/precice/issues/1223 and comment, if you need this function.")]] bool isReadDataAvailable() const; ^~~~~~~~~~~~~~~~~~~ /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp: In function 'PyObject* __pyx_pf_9cyprecice_9Interface_20is_write_data_required(__pyx_obj_9cyprecice_Interface*, double)': /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:3740:112: warning: 'bool precice::SolverInterface::isWriteDataRequired(double) const' is deprecated: Will be removed in 3.0.0. See https://github.com/precice/precice/issues/1223 and comment, if you need this function. [-Wdeprecated-declarations] __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_v_self->thisptr->isWriteDataRequired(__pyx_v_computed_timestep_length)); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 272, __pyx_L1_error) ^ In file included from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:814: /usr/local/include/precice/SolverInterface.hpp:266:143: note: declared here [[deprecated("Will be removed in 3.0.0. See https://github.com/precice/precice/issues/1223 and comment, if you need this function.")]] bool isWriteDataRequired(double computedTimestepLength) const; ^~~~~~~~~~~~~~~~~~~ /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp: In function 'PyObject* __pyx_pf_9cyprecice_9Interface_24has_to_evaluate_surrogate_model(__pyx_obj_9cyprecice_Interface*)': /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:3868:88: warning: 'bool precice::SolverInterface::hasToEvaluateSurrogateModel() const' is deprecated: The manifold mapping feature is no longer supported. [-Wdeprecated-declarations] __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_v_self->thisptr->hasToEvaluateSurrogateModel()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 306, __pyx_L1_error) ^ In file included from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:814: /usr/local/include/precice/SolverInterface.hpp:297:79: note: declared here [[deprecated("The manifold mapping feature is no longer supported.")]] bool hasToEvaluateSurrogateModel() const; ^~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp: In function 'PyObject* __pyx_pf_9cyprecice_9Interface_26has_to_evaluate_fine_model(__pyx_obj_9cyprecice_Interface*)': /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:3932:83: warning: 'bool precice::SolverInterface::hasToEvaluateFineModel() const' is deprecated: The manifold mapping feature is no longer supported. [-Wdeprecated-declarations] __pyx_t_1 = __Pyx_PyBool_FromLong(__pyx_v_self->thisptr->hasToEvaluateFineModel()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 320, __pyx_L1_error) ^ In file included from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:814: /usr/local/include/precice/SolverInterface.hpp:313:79: note: declared here [[deprecated("The manifold mapping feature is no longer supported.")]] bool hasToEvaluateFineModel() const; ^~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp: In function 'PyObject* __pyx_pf_9cyprecice_9Interface_36get_mesh_ids(__pyx_obj_9cyprecice_Interface*)': /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:4261:77: warning: 'std::set precice::SolverInterface::getMeshIDs() const' is deprecated: Use getMeshID() for specific mesh names instead. [-Wdeprecated-declarations] __pyx_t_1 = __pyx_convert_set_to_py_int(__pyx_v_self->thisptr->getMeshIDs()); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 413, __pyx_L1_error) ^ In file included from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:814: /usr/local/include/precice/SolverInterface.hpp:392:84: note: declared here [[deprecated("Use getMeshID() for specific mesh names instead.")]] std::set getMeshIDs() const; ^~~~~~~~~~ /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp: In function 'PyObject* __pyx_pf_9cyprecice_9Interface_66map_read_data_to(__pyx_obj_9cyprecice_Interface*, PyObject*)': /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:7616:49: warning: 'void precice::SolverInterface::mapReadDataTo(int)' is deprecated: Will be removed in 3.0.0. See https://github.com/precice/precice/issues/859 and comment, if you need this function. [-Wdeprecated-declarations] __pyx_v_self->thisptr->mapReadDataTo(__pyx_t_1); ^ In file included from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:814: /usr/local/include/precice/SolverInterface.hpp:650:142: note: declared here [[deprecated("Will be removed in 3.0.0. See https://github.com/precice/precice/issues/859 and comment, if you need this function.")]] void mapReadDataTo(int toMeshID); ^~~~~~~~~~~~~ /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp: In function 'PyObject* __pyx_pf_9cyprecice_9Interface_68map_write_data_from(__pyx_obj_9cyprecice_Interface*, PyObject*)': /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:7677:52: warning: 'void precice::SolverInterface::mapWriteDataFrom(int)' is deprecated: Will be removed in 3.0.0. See https://github.com/precice/precice/issues/859 and comment, if you need this function. [-Wdeprecated-declarations] __pyx_v_self->thisptr->mapWriteDataFrom(__pyx_t_1); ^ In file included from /construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.cpp:814: /usr/local/include/precice/SolverInterface.hpp:662:142: note: declared here [[deprecated("Will be removed in 3.0.0. See https://github.com/precice/precice/issues/859 and comment, if you need this function.")]] void mapWriteDataFrom(int fromMeshID); ^~~~~~~~~~~~~~~~ c++ -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-pyprecice/python-bindings-2.5.0.2/cyprecice/cyprecice.o -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/cyprecice.cpython-39.so -L/usr/local/lib -lprecice UPDATING build/lib.dragonfly-6.5-x86_64-cpython-39/precice/_version.py set build/lib.dragonfly-6.5-x86_64-cpython-39/precice/_version.py to 'v2.5.0.2' running install_lib creating /construction/science/py-pyprecice/stage/usr/local/lib/python3.9 creating /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages copying build/lib.dragonfly-6.5-x86_64-cpython-39/cyprecice.cpython-39.so -> /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages creating /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages/precice copying build/lib.dragonfly-6.5-x86_64-cpython-39/precice/_version.py -> /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages/precice copying build/lib.dragonfly-6.5-x86_64-cpython-39/precice/__init__.py -> /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages/precice byte-compiling /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages/precice/_version.py to _version.cpython-39.pyc byte-compiling /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages/precice/__init__.py to __init__.cpython-39.pyc writing byte-compilation script '/tmp/tmpgjbjvf5f.py' /usr/local/bin/python3.9 /tmp/tmpgjbjvf5f.py removing /tmp/tmpgjbjvf5f.py running install_egg_info running egg_info creating pyprecice.egg-info writing pyprecice.egg-info/PKG-INFO writing dependency_links to pyprecice.egg-info/dependency_links.txt writing requirements to pyprecice.egg-info/requires.txt writing top-level names to pyprecice.egg-info/top_level.txt writing manifest file 'pyprecice.egg-info/SOURCES.txt' reading manifest file 'pyprecice.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE.txt' writing manifest file 'pyprecice.egg-info/SOURCES.txt' Copying pyprecice.egg-info to /construction/science/py-pyprecice/stage/usr/local/lib/python3.9/site-packages/pyprecice-2.5.0.2-py3.9.egg-info running install_scripts writing list of installed files to '/construction/science/py-pyprecice/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_filesystem.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_filesystem.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_log.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_log.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_log_setup.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_log_setup.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_program_options.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_program_options.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_system.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_system.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_thread.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_thread.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_unit_test_framework.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_unit_test_framework.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libxml2.so.2 from textproc/libxml2 but it is not declared as a dependency Warning: you need USE_GNOME+=libxml2 Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_regex.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_regex.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_chrono.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_chrono.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libboost_atomic.so.1.82.0 from devel/boost-libs but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libboost_atomic.so:devel/boost-libs Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libicudata.so.73 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicudata.so:devel/icu Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libicui18n.so.73 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicui18n.so:devel/icu Error: /usr/local/lib/python3.9/site-packages/cyprecice.cpython-39.so is linked to /usr/local/lib/libicuuc.so.73 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicuuc.so:devel/icu Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:24 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-pyprecice-2.5.0.2 file sizes/checksums [13]: 0% file sizes/checksums [13]: 100% Service unavailablepacking files [13]: 0% packing files [13]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:50