------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt XDG_CACHE_HOME=/construction/science/py-oddt/.cache HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-oddt/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-oddt XDG_CONFIG_HOME=/construction/science/py-oddt XDG_CACHE_HOME=/construction/science/py-oddt/.cache HOME=/construction/science/py-oddt TMPDIR="/tmp" PATH=/construction/science/py-oddt/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-oddt/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-oddt/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-oddt" EXAMPLESDIR="share/examples/py39-oddt" DATADIR="share/py39-oddt" WWWDIR="www/py39-oddt" ETCDIR="etc/py39-oddt" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-oddt DOCSDIR=/usr/local/share/doc/py39-oddt EXAMPLESDIR=/usr/local/share/examples/py39-oddt WWWDIR=/usr/local/www/py39-oddt ETCDIR=/usr/local/etc/py39-oddt SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0,1.pkg Installing /packages/All/mpc-1.2.1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.4.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_5.pkg ===== Message from gcc12-12.2.0_5: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20,1.pkg Installing /packages/All/suitesparse-config-7.0.1.pkg Installing /packages/All/suitesparse-amd-3.0.3.pkg Installing /packages/All/suitesparse-camd-3.0.3.pkg Installing /packages/All/suitesparse-colamd-3.0.3.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3.pkg Installing /packages/All/suitesparse-cholmod-4.0.3.pkg Installing /packages/All/suitesparse-umfpack-6.1.0.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.3.pkg ===== Message from ncurses-6.3: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0.pkg Installing /packages/All/py39-numpy-1.24.1,1.pkg Installing /packages/All/py39-joblib-1.1.0.pkg Installing /packages/All/py39-cython-0.29.33.pkg Installing /packages/All/py39-six-1.16.0.pkg Installing /packages/All/py39-dateutil-2.8.2.pkg Installing /packages/All/py39-pytz-2022.7,1.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/libedit-3.1.20221030,1.pkg Installing /packages/All/sqlite3-3.41.2,1.pkg Installing /packages/All/py39-sqlite3-3.9.17_7.pkg Installing /packages/All/py39-bottleneck-1.3.6.pkg Installing /packages/All/py39-numexpr-2.8.4.pkg Installing /packages/All/py39-pandas-1.5.3,1.pkg ===== Message from py39-pandas-1.5.3,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. Installing /packages/All/blas-3.11.0.pkg Installing /packages/All/py39-scipy-1.10.0.pkg Installing /packages/All/py39-threadpoolctl-3.1.0.pkg Installing /packages/All/py39-scikit-learn-1.2.2.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default SUCCEEDED 00:00:17 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-oddt-0.7_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-oddt-0.7_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-oddt-0.7_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-oddt-0.7_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-oddt-0.7_1 for building => SHA256 Checksum OK for oddt-oddt-0.7_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-oddt-0.7_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-oddt-0.7_1 for building ===> Extracting for py39-oddt-0.7_1 => SHA256 Checksum OK for oddt-oddt-0.7_GH0.tar.gz. Extracted Memory Use: 52.44M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-oddt-0.7_1 ===> Applying ports patches for py39-oddt-0.7_1 from /xports/science/py-oddt/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-oddt-0.7_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-oddt-0.7_1 depends on package: py39-joblib>=0.9.4 - found ===> py39-oddt-0.7_1 depends on package: py39-pandas>=0.19.2 - found ===> py39-oddt-0.7_1 depends on package: py39-scikit-learn>=0.18 - found ===> py39-oddt-0.7_1 depends on package: py39-scipy>=0.17 - found ===> py39-oddt-0.7_1 depends on package: py39-six>0 - found ===> py39-oddt-0.7_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-oddt-0.7_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-oddt-0.7_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-oddt-0.7_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-oddt-0.7_1 depends on package: py39-joblib>=0.9.4 - found ===> py39-oddt-0.7_1 depends on package: py39-pandas>=0.19.2 - found ===> py39-oddt-0.7_1 depends on package: py39-scikit-learn>=0.18 - found ===> py39-oddt-0.7_1 depends on package: py39-scipy>=0.17 - found ===> py39-oddt-0.7_1 depends on package: py39-six>0 - found ===> py39-oddt-0.7_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-oddt-0.7_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-oddt-0.7_1 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-oddt-0.7_1 Traceback (most recent call last): File "", line 1, in File "setup.py", line 3, in from oddt import __version__ as VERSION File "/construction/science/py-oddt/oddt-0.7/oddt/__init__.py", line 20, in from oddt.toolkits import ob File "/construction/science/py-oddt/oddt-0.7/oddt/toolkits/ob.py", line 18, in from sklearn.utils.deprecation import deprecated File "/usr/local/lib/python3.9/site-packages/sklearn/__init__.py", line 82, in from .base import clone File "/usr/local/lib/python3.9/site-packages/sklearn/base.py", line 17, in from .utils import _IS_32BIT File "/usr/local/lib/python3.9/site-packages/sklearn/utils/__init__.py", line 25, in from .fixes import parse_version, threadpool_info File "/usr/local/lib/python3.9/site-packages/sklearn/utils/fixes.py", line 142, in threadpool_limits.__doc__ = threadpoolctl.threadpool_limits.__doc__ NameError: name 'threadpoolctl' is not defined *** Error code 1 Stop. make: stopped in /xports/science/py-oddt FAILED 00:00:01