------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for py39-hoomd-blue-4.0.1: TBB=on: Enable support for Threading Building Blocks (TBB) ====> MPI (Message Passing Interface) support: you have to select exactly one of them NOMPI=off: Build without parallel processing support MPICH=on: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/py-hoomd-blue XDG_CONFIG_HOME=/construction/science/py-hoomd-blue XDG_CACHE_HOME=/construction/science/py-hoomd-blue/.cache HOME=/construction/science/py-hoomd-blue TMPDIR="/tmp" PATH=/construction/science/py-hoomd-blue/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-hoomd-blue/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-hoomd-blue XDG_CONFIG_HOME=/construction/science/py-hoomd-blue XDG_CACHE_HOME=/construction/science/py-hoomd-blue/.cache HOME=/construction/science/py-hoomd-blue TMPDIR="/tmp" PATH=/construction/science/py-hoomd-blue/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-hoomd-blue/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lexecinfo -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-hoomd-blue/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMPI="@comment " NO_OPENMPI="" TBB="" NO_TBB="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/hoomd-blue" EXAMPLESDIR="share/examples/hoomd-blue" DATADIR="share/hoomd-blue" WWWDIR="www/hoomd-blue" ETCDIR="etc/hoomd-blue" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- MPICH="" NO_MPICH="@comment " NOMPI="@comment " NO_NOMPI="" OPENMPI="@comment " NO_OPENMPI="" TBB="" NO_TBB="@comment " PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hoomd-blue DOCSDIR=/usr/local/share/doc/hoomd-blue EXAMPLESDIR=/usr/local/share/examples/hoomd-blue WWWDIR=/usr/local/www/hoomd-blue ETCDIR=/usr/local/etc/hoomd-blue SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/pybind11-2.10.4.pkg Installing /packages/All/icu-73.2,1.pkg Installing /packages/All/boost-libs-1.82.0_1.pkg ===== Message from boost-libs-1.82.0_1: -- You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Installing /packages/All/cereal-1.3.2_1.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.11.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lapack-3.11.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/eigen-3.4.0_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/onetbb-2021.9.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpciaccess-0.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/level-zero-1.12.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hwloc2-2.8.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/json-c-0.16.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libsysinfo-0.0.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgpg-error-1.47.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgcrypt-1.10.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/munge-0.5.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libaec-1.0.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hdf5-1.12.2_2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libedit-3.1.20221030,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lua54-5.4.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/slurm-wlm-20.02.7_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. ===== Message from slurm-wlm-20.02.7_3: -- ===> NOTICE: The slurm-wlm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libepoll-shim-0.0.20230411.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/bash-5.2.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/perl5-5.32.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpich-3.4.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from mpich-3.4.3_2: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:41 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/sbin/pkg - found => glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/glotzerlab/hoomd-blue/tar.gz/v4.0.1?dummy=/glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz fetch: https://codeload.github.com/glotzerlab/hoomd-blue/tar.gz/v4.0.1?dummy=/glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz: size unknown fetch: https://codeload.github.com/glotzerlab/hoomd-blue/tar.gz/v4.0.1?dummy=/glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz: size of remote file is not known glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz 0 B 0 Bps glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz 1072 kB 1281 kBps glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz 2701 kB 2048 kBps 01s ===> Fetching all distfiles required by py39-hoomd-blue-4.0.1 for building SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-hoomd-blue-4.0.1 for building => SHA256 Checksum OK for glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-upp11-0c1fb8d_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-quickhull-a706b5b_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-random123-a2c4f04_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-HIP-d211f99_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-hipCUB-c70e193_GH0.tar.gz. => SHA256 Checksum OK for mphowardlab-neighbor-ba0f068_GH0.tar.gz. => SHA256 Checksum OK for mphowardlab-hipper-b6da049_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-hoomd-blue-4.0.1 for building ===> Extracting for py39-hoomd-blue-4.0.1 => SHA256 Checksum OK for glotzerlab-hoomd-blue-v4.0.1_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-upp11-0c1fb8d_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-nano-signal-slot-34223a4_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-quickhull-a706b5b_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-random123-a2c4f04_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-HIP-d211f99_GH0.tar.gz. => SHA256 Checksum OK for glotzerlab-hipCUB-c70e193_GH0.tar.gz. => SHA256 Checksum OK for mphowardlab-neighbor-ba0f068_GH0.tar.gz. => SHA256 Checksum OK for mphowardlab-hipper-b6da049_GH0.tar.gz. Extracted Memory Use: 26.23M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-hoomd-blue-4.0.1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-hoomd-blue-4.0.1 depends on package: pybind11>0 - found ===> py39-hoomd-blue-4.0.1 depends on package: cereal>0 - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/bin/cmake - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/bin/python3.9 - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py39-hoomd-blue-4.0.1 depends on shared library: libtbb.so - found (/usr/local/lib/libtbb.so) ===> py39-hoomd-blue-4.0.1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-hoomd-blue-4.0.1 depends on package: pybind11>0 - found ===> py39-hoomd-blue-4.0.1 depends on package: cereal>0 - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/bin/cmake - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/bin/python3.9 - found ===> py39-hoomd-blue-4.0.1 depends on file: /usr/local/bin/ccache - found ===> py39-hoomd-blue-4.0.1 depends on shared library: libtbb.so - found (/usr/local/lib/libtbb.so) ===> py39-hoomd-blue-4.0.1 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Configuring for py39-hoomd-blue-4.0.1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/py-hoomd-blue/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring HOOMD 4.0.1 -- Found MPI_C: /usr/local/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found cereal: /usr/local/lib/cmake/cereal -- Found PythonInterp: /usr/local/bin/python3.9 (found suitable version "3.9.17", minimum required is "3") -- Found PythonLibs: /usr/local/lib/libpython3.9.so -- Performing Test HAS_FLTO -- Performing Test HAS_FLTO - Success -- Found pybind11: /usr/local/include (found version "2.10.4") -- Found pybind11: /usr/local/share/cmake/pybind11 /usr/local/include (version 2.10.4) -- Installing hoomd python module to: /usr/local/lib/python3.9/site-packages/hoomd -- Found eigen: /usr/local/share/eigen3/cmake /usr/local/include/eigen3 (version 3.4.0) -- Found TBB: /usr/local/lib/cmake/TBB /usr/local/lib/libtbb.so.12.9 /usr/local/include -- Found plugin: example_plugins/pair_plugin -- Found plugin: example_plugins/updater_plugin -- Configuring done (7.8s) -- Generating done (0.3s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_MODULE_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/py-hoomd-blue/.build SUCCEEDED 00:00:08 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-hoomd-blue-4.0.1 /usr/local/bin/cmake -S/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -B/construction/science/py-hoomd-blue/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/py-hoomd-blue/.build/CMakeFiles /construction/science/py-hoomd-blue/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- hoomd/CMakeFiles/quickhull.dir/all --- --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/custom/CMakeFiles/copy_custom.dir/all --- --- hoomd/data/CMakeFiles/copy_data.dir/all --- --- hoomd/filter/CMakeFiles/copy_filter.dir/all --- --- hoomd/write/CMakeFiles/copy_write.dir/all --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest_programs.dir/all --- --- hoomd/tune/CMakeFiles/copy_tune.dir/all --- --- hoomd/update/CMakeFiles/copy_update.dir/all --- --- hoomd/md/CMakeFiles/copy_md.dir/all --- --- hoomd/md/data/CMakeFiles/copy_md-data.dir/all --- --- hoomd/md/pair/CMakeFiles/copy_md-pair.dir/all --- --- hoomd/custom/CMakeFiles/copy_custom.dir/all --- /usr/bin/make -f hoomd/custom/CMakeFiles/copy_custom.dir/build.make hoomd/custom/CMakeFiles/copy_custom.dir/depend --- hoomd/data/CMakeFiles/copy_data.dir/all --- /usr/bin/make -f hoomd/data/CMakeFiles/copy_data.dir/build.make hoomd/data/CMakeFiles/copy_data.dir/depend --- hoomd/filter/CMakeFiles/copy_filter.dir/all --- /usr/bin/make -f hoomd/filter/CMakeFiles/copy_filter.dir/build.make hoomd/filter/CMakeFiles/copy_filter.dir/depend --- hoomd/write/CMakeFiles/copy_write.dir/all --- /usr/bin/make -f hoomd/write/CMakeFiles/copy_write.dir/build.make hoomd/write/CMakeFiles/copy_write.dir/depend --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest_programs.dir/all --- /usr/bin/make -f hoomd/pytest/CMakeFiles/copy_hoomd_pytest_programs.dir/build.make hoomd/pytest/CMakeFiles/copy_hoomd_pytest_programs.dir/depend --- hoomd/tune/CMakeFiles/copy_tune.dir/all --- /usr/bin/make -f hoomd/tune/CMakeFiles/copy_tune.dir/build.make hoomd/tune/CMakeFiles/copy_tune.dir/depend --- hoomd/CMakeFiles/copy_hoomd.dir/all --- /usr/bin/make -f hoomd/CMakeFiles/copy_hoomd.dir/build.make hoomd/CMakeFiles/copy_hoomd.dir/depend --- hoomd/md/CMakeFiles/copy_md.dir/all --- /usr/bin/make -f hoomd/md/CMakeFiles/copy_md.dir/build.make hoomd/md/CMakeFiles/copy_md.dir/depend --- hoomd/md/data/CMakeFiles/copy_md-data.dir/all --- /usr/bin/make -f hoomd/md/data/CMakeFiles/copy_md-data.dir/build.make hoomd/md/data/CMakeFiles/copy_md-data.dir/depend --- hoomd/CMakeFiles/quickhull.dir/all --- /usr/bin/make -f hoomd/CMakeFiles/quickhull.dir/build.make hoomd/CMakeFiles/quickhull.dir/depend --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- /usr/bin/make -f hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/build.make hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/depend --- hoomd/update/CMakeFiles/copy_update.dir/all --- /usr/bin/make -f hoomd/update/CMakeFiles/copy_update.dir/build.make hoomd/update/CMakeFiles/copy_update.dir/depend --- hoomd/data/CMakeFiles/copy_data.dir/all --- --- hoomd/data/CMakeFiles/copy_data.dir/depend --- --- hoomd/md/pair/CMakeFiles/copy_md-pair.dir/all --- /usr/bin/make -f hoomd/md/pair/CMakeFiles/copy_md-pair.dir/build.make hoomd/md/pair/CMakeFiles/copy_md-pair.dir/depend --- hoomd/write/CMakeFiles/copy_write.dir/all --- --- 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hoomd/hpmc/nec/tune.py --- [ 25%] Copy hoomd/hpmc/nec/tune.py --- hoomd/hpmc/nec/integrate.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/nec && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/nec/integrate.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/nec/integrate.py --- hoomd/example_plugins/pair_plugin/CMakeFiles/copy_pair_plugin.dir/all --- /usr/bin/make -f hoomd/example_plugins/pair_plugin/CMakeFiles/copy_pair_plugin.dir/build.make hoomd/example_plugins/pair_plugin/CMakeFiles/copy_pair_plugin.dir/depend --- hoomd/hpmc/nec/CMakeFiles/copy_hpmc-nec.dir/all --- --- hoomd/hpmc/nec/tune.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/nec && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/nec/tune.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/nec/tune.py --- hoomd/hpmc/CMakeFiles/copy_hpmc.dir/all --- --- hoomd/hpmc/integrate.py --- --- 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/construction/science/py-hoomd-blue/.build/hoomd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest_plugin_validate.py /construction/science/py-hoomd-blue/.build/hoomd/pytest_plugin_validate.py --- hoomd/example_plugins/pair_plugin/CMakeFiles/copy_pair_plugin.dir/all --- --- hoomd/example_plugins/pair_plugin/pair.py --- [ 32%] Copy hoomd/example_plugins/pair_plugin/pair.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- [ 32%] Copy hoomd/md/pytest/test_aniso_pair.py --- hoomd/example_plugins/pair_plugin/CMakeFiles/copy_pair_plugin.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/pair_plugin && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/example_plugins/pair_plugin/pair.py /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/pair_plugin/pair.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_aniso_pair.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_aniso_pair.py --- hoomd/metal/CMakeFiles/copy_metal.dir/all --- --- hoomd/metal/pair.py --- --- hoomd/hpmc/CMakeFiles/copy_hpmc.dir/all --- [ 32%] Built target copy_hpmc --- hoomd/mpcd/CMakeFiles/copy_mpcd.dir/all --- --- hoomd/mpcd/data.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- [ 33%] Copy hoomd/hpmc/pytest/test_external_user.py --- hoomd/example_plugins/pair_plugin/pytest/CMakeFiles/copy_pair_plugin_pytest.dir/all --- --- hoomd/example_plugins/pair_plugin/pytest/test_example_pair.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_external_user.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_external_user.py --- hoomd/example_plugins/updater_plugin/pytest/CMakeFiles/copy_updater_plugin_pytest.dir/all --- [ 34%] Copy hoomd/example_plugins/updater_plugin/pytest/__init__.py cd /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/updater_plugin/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/example_plugins/updater_plugin/pytest/__init__.py /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/updater_plugin/pytest/__init__.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/simulation.py --- --- hoomd/example_plugins/updater_plugin/pytest/CMakeFiles/copy_updater_plugin_pytest.dir/all --- --- hoomd/example_plugins/updater_plugin/pytest/test_example_updater.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_array_view.py --- --- hoomd/example_plugins/pair_plugin/pytest/CMakeFiles/copy_pair_plugin_pytest.dir/all --- --- hoomd/example_plugins/pair_plugin/pytest/__init__.py --- [ 34%] Copy hoomd/example_plugins/pair_plugin/pytest/__init__.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_filter_updater.py --- --- hoomd/metal/CMakeFiles/copy_metal.dir/all --- [ 34%] Copy hoomd/metal/pair.py --- hoomd/example_plugins/pair_plugin/pytest/CMakeFiles/copy_pair_plugin_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/pair_plugin/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/example_plugins/pair_plugin/pytest/__init__.py /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/pair_plugin/pytest/__init__.py --- hoomd/metal/CMakeFiles/copy_metal.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/metal && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/metal/pair.py /construction/science/py-hoomd-blue/.build/hoomd/metal/pair.py --- hoomd/example_plugins/pair_plugin/pytest/CMakeFiles/copy_pair_plugin_pytest.dir/all --- --- hoomd/example_plugins/pair_plugin/pytest/test_example_pair.py --- [ 35%] Copy hoomd/example_plugins/pair_plugin/pytest/test_example_pair.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_external_wall.py --- --- hoomd/example_plugins/pair_plugin/pytest/CMakeFiles/copy_pair_plugin_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/pair_plugin/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/example_plugins/pair_plugin/pytest/test_example_pair.py /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/pair_plugin/pytest/test_example_pair.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- [ 35%] Copy hoomd/simulation.py --- hoomd/mpcd/CMakeFiles/copy_mpcd.dir/all --- [ 35%] Copy hoomd/mpcd/data.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/simulation.py /construction/science/py-hoomd-blue/.build/hoomd/simulation.py --- hoomd/mpcd/CMakeFiles/copy_mpcd.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/data.py /construction/science/py-hoomd-blue/.build/hoomd/mpcd/data.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- [ 35%] Copy hoomd/md/pytest/test_array_view.py --- hoomd/example_plugins/pair_plugin/CMakeFiles/copy_pair_plugin.dir/all --- [ 35%] Built target copy_pair_plugin --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- [ 35%] Copy hoomd/pytest/test_filter_updater.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_bond.py --- --- hoomd/md/pytest/test_array_view.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_array_view.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_array_view.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_filter_updater.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_filter_updater.py --- hoomd/mpcd/CMakeFiles/copy_mpcd.dir/all --- --- hoomd/mpcd/force.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- [ 35%] Copy hoomd/hpmc/pytest/test_external_wall.py cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy 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hoomd/metal/CMakeFiles/copy_metal.dir/all --- [ 35%] Built target copy_metal --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_bond.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_bond.py --- hoomd/md/pytest/test_burst_writer.py --- --- hoomd/example_plugins/updater_plugin/CMakeFiles/copy_updater_plugin.dir/all --- --- hoomd/example_plugins/updater_plugin/update.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_move_size_tuner.py --- --- hoomd/mpcd/CMakeFiles/copy_mpcd.dir/all --- --- hoomd/mpcd/integrate.py --- --- hoomd/CMakeFiles/copy_hoomd.dir/all --- [ 35%] Copy hoomd/snapshot.py cd /construction/science/py-hoomd-blue/.build/hoomd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/snapshot.py 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hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_muvt.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_muvt.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- [ 36%] Copy hoomd/pytest/test_local_snapshot.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_constrain_distance.py --- --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/state.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_local_snapshot.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_local_snapshot.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- 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/construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_constrain_distance.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- [ 39%] Copy hoomd/hpmc/pytest/test_pair_union_user.py --- hoomd/mpcd/CMakeFiles/copy_mpcd.dir/all --- --- hoomd/mpcd/update.py --- [ 39%] Copy hoomd/mpcd/update.py cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/update.py /construction/science/py-hoomd-blue/.build/hoomd/mpcd/update.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_pair_union_user.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_pair_union_user.py --- hoomd/mpcd/CMakeFiles/copy_mpcd.dir/all --- --- hoomd/mpcd/init.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/init.py /construction/science/py-hoomd-blue/.build/hoomd/mpcd/init.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- [ 39%] Copy hoomd/pytest/test_logging.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_pair_user.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_dihedral.py --- --- hoomd/md/pytest/test_custom_force.py --- [ 39%] Copy hoomd/md/pytest/test_custom_force.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_mesh.py --- --- hoomd/pytest/test_logging.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_logging.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_logging.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_custom_force.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_custom_force.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/trigger.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_quick_compress.py --- --- hoomd/hpmc/pytest/test_scale.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_dihedral.py --- [ 40%] Copy hoomd/md/pytest/test_dihedral.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_mesh.py --- [ 40%] Copy hoomd/pytest/test_mesh.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_dihedral.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_dihedral.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_mesh.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_mesh.py --- hoomd/pytest/test_operation.py --- --- hoomd/example_plugins/pair_plugin/pytest/CMakeFiles/copy_pair_plugin_pytest.dir/all --- [ 40%] Built target copy_pair_plugin_pytest --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_shape.py --- --- hoomd/example_plugins/updater_plugin/CMakeFiles/copy_updater_plugin.dir/all --- [ 40%] Built target copy_updater_plugin --- hoomd/CMakeFiles/copy_hoomd.dir/all --- [ 40%] Copy hoomd/trigger.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_shape_updater.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_external.py --- --- hoomd/md/pytest/test_filter_md.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_shape_utils.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_operations.py --- --- hoomd/pytest/test_operation.py --- [ 41%] Copy hoomd/pytest/test_operation.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/trigger.py /construction/science/py-hoomd-blue/.build/hoomd/trigger.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_shape.py --- [ 41%] Copy hoomd/hpmc/pytest/test_shape.py cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy 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hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_quick_compress.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_quick_compress.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_quick_compress.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_external.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_external.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_shape_updater.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_shape_updater.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_shape_updater.py --- hoomd/hpmc/pytest/test_scale.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_scale.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_scale.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/util.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_pair_user.py --- [ 42%] Copy hoomd/hpmc/pytest/test_pair_user.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_operations.py --- [ 42%] Copy hoomd/pytest/test_operations.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_filter_md.py --- [ 42%] Copy hoomd/md/pytest/test_filter_md.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_parameter_dict.py --- --- hoomd/pytest/test_operations.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_operations.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_operations.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_flags.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_small_box_2d.py --- --- hoomd/hpmc/pytest/test_pair_user.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_pair_user.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_pair_user.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- [ 42%] Copy hoomd/util.py cd /construction/science/py-hoomd-blue/.build/hoomd && /usr/local/bin/cmake -E copy 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hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_small_box_2d.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_small_box_2d.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_flags.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_flags.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_small_box_3d.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_gsd.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_parameter_dict.py --- [ 42%] Copy hoomd/pytest/test_parameter_dict.py --- hoomd/pytest/test_remove_drift.py --- [ 42%] Copy hoomd/pytest/test_remove_drift.py --- hoomd/pytest/test_parameter_dict.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_parameter_dict.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_parameter_dict.py --- hoomd/pytest/test_remove_drift.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_remove_drift.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_remove_drift.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/variant.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_half_step_hook.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_simulation.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_shape_utils.py --- [ 42%] Copy hoomd/hpmc/pytest/test_shape_utils.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/version.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_improper.py --- --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_shape_utils.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_shape_utils.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_integrate.py --- --- hoomd/md/pytest/test_gsd.py --- [ 42%] Copy hoomd/md/pytest/test_gsd.py --- hoomd/hpmc/pytest/CMakeFiles/copy_hpmc_pytest.dir/all --- --- hoomd/hpmc/pytest/test_small_box_3d.py --- [ 42%] Copy hoomd/hpmc/pytest/test_small_box_3d.py cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/pytest/test_small_box_3d.py /construction/science/py-hoomd-blue/.build/hoomd/hpmc/pytest/test_small_box_3d.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_gsd.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_gsd.py --- hoomd/md/pytest/test_half_step_hook.py --- [ 43%] Copy hoomd/md/pytest/test_half_step_hook.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_snapshot.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_half_step_hook.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_half_step_hook.py --- hoomd/md/pytest/test_improper.py --- [ 43%] Copy hoomd/md/pytest/test_improper.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/variant.py --- [ 43%] Copy hoomd/variant.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_sorter.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_improper.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_improper.py --- hoomd/CMakeFiles/copy_hoomd.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/variant.py /construction/science/py-hoomd-blue/.build/hoomd/variant.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_integrate.py --- [ 43%] Copy hoomd/md/pytest/test_integrate.py cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_integrate.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_integrate.py --- hoomd/md/pytest/test_kernel_parameters.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_state.py --- --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_manifolds.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_snapshot.py --- [ 44%] Copy hoomd/pytest/test_snapshot.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_meshpotential.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_snapshot.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_snapshot.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_meta_wall_list.py --- --- hoomd/md/pytest/test_methods.py --- --- hoomd/CMakeFiles/copy_hoomd.dir/all --- --- hoomd/wall.py --- --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_state.py --- [ 44%] Copy hoomd/pytest/test_state.py --- hoomd/pytest/test_sorter.py --- [ 44%] Copy hoomd/pytest/test_sorter.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- --- hoomd/md/pytest/test_manifolds.py --- [ 44%] Copy hoomd/md/pytest/test_manifolds.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_state.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_state.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_state.py --- hoomd/pytest/test_sorter.py --- cd /construction/science/py-hoomd-blue/.build/hoomd/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/pytest/test_sorter.py /construction/science/py-hoomd-blue/.build/hoomd/pytest/test_sorter.py --- hoomd/md/pytest/CMakeFiles/copy_md_pytest.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_manifolds.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_manifolds.py --- hoomd/pytest/CMakeFiles/copy_hoomd_pytest.dir/all --- --- hoomd/pytest/test_simulation.py --- [ 44%] Copy hoomd/pytest/test_simulation.py cd 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/construction/science/py-hoomd-blue/.build/hoomd/md/pytest && /usr/local/bin/cmake -E copy /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/pytest/test_wall_data.py /construction/science/py-hoomd-blue/.build/hoomd/md/pytest/test_wall_data.py [ 50%] Built target copy_md_pytest --- hoomd/CMakeFiles/quickhull.dir/all --- --- hoomd/libquickhull.so --- [ 51%] Linking CXX shared library libquickhull.so cd /construction/science/py-hoomd-blue/.build/hoomd && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/quickhull.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -lexecinfo -L/usr/local/lib -shared -Wl,-soname,libquickhull.so -o libquickhull.so 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hoomd/CMakeFiles/_hoomd.dir/filter/export_filters.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hoomd_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/CMakeFiles/_hoomd.dir/filter/export_filters.cc.o -MF CMakeFiles/_hoomd.dir/filter/export_filters.cc.o.d -o CMakeFiles/_hoomd.dir/filter/export_filters.cc.o -c 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-Wl,-z,origin,-rpath,/construction/science/py-hoomd-blue/.build/hoomd libquickhull.so /usr/local/lib/libtbb.so.12.9 /usr/local/lib/libmpicxx.so /usr/local/lib/libmpi.so [ 62%] Built target _hoomd --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/all --- /usr/bin/make -f hoomd/md/CMakeFiles/_md.dir/build.make hoomd/md/CMakeFiles/_md.dir/depend --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- /usr/bin/make -f hoomd/hpmc/CMakeFiles/_hpmc.dir/build.make hoomd/hpmc/CMakeFiles/_hpmc.dir/depend --- hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/all --- /usr/bin/make -f hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/build.make hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/depend --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/depend --- cd 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-DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module.cc.o -MF CMakeFiles/_hpmc.dir/module.cc.o.d -o CMakeFiles/_hpmc.dir/module.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o --- [ 64%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_simple_polygon.cc.o --- [ 64%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/module_simple_polygon.cc.o --- hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/updater_plugin && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_updater_plugin_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/module.cc.o -MF CMakeFiles/_updater_plugin.dir/module.cc.o.d -o CMakeFiles/_updater_plugin.dir/module.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/example_plugins/updater_plugin/module.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module_simple_polygon.cc.o -MF CMakeFiles/_hpmc.dir/module_simple_polygon.cc.o.d -o CMakeFiles/_hpmc.dir/module_simple_polygon.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc--- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o --- cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o -MF CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o.d -o CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_convex_polyhedron.cc.o --- [ 65%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_convex_polyhedron.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_convex_polyhedron.cc.o -MF CMakeFiles/_hpmc.dir/module_union_convex_polyhedron.cc.o.d -o CMakeFiles/_hpmc.dir/module_union_convex_polyhedron.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_faceted_ellipsoid.cc.o --- [ 65%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_faceted_ellipsoid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_faceted_ellipsoid.cc.o -MF CMakeFiles/_hpmc.dir/module_union_faceted_ellipsoid.cc.o.d -o CMakeFiles/_hpmc.dir/module_union_faceted_ellipsoid.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc --- hoomd/md/CMakeFiles/_md.dir/all --- /usr/bin/make -f 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-MF CMakeFiles/_md.dir/module-md.cc.o.d -o CMakeFiles/_md.dir/module-md.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/module-md.cc --- hoomd/md/CMakeFiles/_md.dir/ActiveForceCompute.cc.o --- [ 65%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ActiveForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ActiveForceCompute.cc.o -MF CMakeFiles/_md.dir/ActiveForceCompute.cc.o.d -o CMakeFiles/_md.dir/ActiveForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ActiveForceCompute.cc --- hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/all --- --- hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/ExampleUpdater.cc.o --- [ 65%] Building CXX object hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/ExampleUpdater.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/updater_plugin && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_updater_plugin_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/ExampleUpdater.cc.o -MF CMakeFiles/_updater_plugin.dir/ExampleUpdater.cc.o.d -o CMakeFiles/_updater_plugin.dir/ExampleUpdater.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/example_plugins/updater_plugin/ExampleUpdater.cc --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/ActiveRotationalDiffusionUpdater.cc.o --- [ 66%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ActiveRotationalDiffusionUpdater.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ActiveRotationalDiffusionUpdater.cc.o -MF CMakeFiles/_md.dir/ActiveRotationalDiffusionUpdater.cc.o.d -o CMakeFiles/_md.dir/ActiveRotationalDiffusionUpdater.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ActiveRotationalDiffusionUpdater.cc --- hoomd/example_plugins/updater_plugin/CMakeFiles/_updater_plugin.dir/all --- --- hoomd/example_plugins/updater_plugin/_updater_plugin.cpython-39.so --- [ 66%] Linking CXX shared library _updater_plugin.cpython-39.so cd /construction/science/py-hoomd-blue/.build/hoomd/example_plugins/updater_plugin && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_updater_plugin.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -Wl,-rpath=/usr/local/lib/gcc12 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc12 -lexecinfo -L/usr/local/lib -shared -Wl,-soname,_updater_plugin.cpython-39.so -o _updater_plugin.cpython-39.so CMakeFiles/_updater_plugin.dir/module.cc.o CMakeFiles/_updater_plugin.dir/ExampleUpdater.cc.o -Wl,-z,origin,-rpath,/construction/science/py-hoomd-blue/.build/hoomd ../../_hoomd.cpython-39.so ../../libquickhull.so /usr/local/lib/libtbb.so.12.9 /usr/local/lib/libmpicxx.so /usr/local/lib/libmpi.so [ 66%] Built target _updater_plugin --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_sphere.cc.o --- [ 66%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_sphere.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_sphere.cc.o -MF CMakeFiles/_hpmc.dir/module_union_sphere.cc.o.d -o CMakeFiles/_hpmc.dir/module_union_sphere.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/AlchemostatTwoStep.cc.o --- [ 66%] Building CXX object hoomd/md/CMakeFiles/_md.dir/AlchemostatTwoStep.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/AlchemostatTwoStep.cc.o -MF CMakeFiles/_md.dir/AlchemostatTwoStep.cc.o.d -o CMakeFiles/_md.dir/AlchemostatTwoStep.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AlchemostatTwoStep.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc:6: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc:6: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc:6: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc:6: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc:6: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc:6: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module.cc:6: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_polyhedron.cc.o --- [ 66%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_polyhedron.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_polyhedron.cc.o -MF CMakeFiles/_hpmc.dir/module_convex_polyhedron.cc.o.d -o CMakeFiles/_hpmc.dir/module_convex_polyhedron.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairALJ2.cc.o --- [ 66%] Building CXX object hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairALJ2.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairALJ2.cc.o -MF CMakeFiles/_md.dir/AnisoPotentialPairALJ2.cc.o.d -o CMakeFiles/_md.dir/AnisoPotentialPairALJ2.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPairALJ2.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_spheropolygon.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_spheropolygon.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeSpheropolygon; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_spheropolyhedron.cc.o --- [ 66%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_spheropolyhedron.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_spheropolyhedron.cc.o -MF CMakeFiles/_hpmc.dir/module_convex_spheropolyhedron.cc.o.d -o CMakeFiles/_hpmc.dir/module_convex_spheropolyhedron.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_polygon.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polygon.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeConvexPolygon; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/hpmc/CMakeFiles/_hpmc.dir/ExternalFieldWall.cc.o --- [ 67%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/ExternalFieldWall.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/ExternalFieldWall.cc.o -MF CMakeFiles/_hpmc.dir/ExternalFieldWall.cc.o.d -o CMakeFiles/_hpmc.dir/ExternalFieldWall.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_polyhedron.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_polyhedron.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapePolyhedron; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/hpmc/CMakeFiles/_hpmc.dir/ShapeUtils.cc.o --- [ 67%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/ShapeUtils.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/ShapeUtils.cc.o -MF CMakeFiles/_hpmc.dir/ShapeUtils.cc.o.d -o CMakeFiles/_hpmc.dir/ShapeUtils.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_sphere.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphere.cc:19: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeSphere; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/hpmc/CMakeFiles/_hpmc.dir/UpdaterBoxMC.cc.o --- [ 67%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/UpdaterBoxMC.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/UpdaterBoxMC.cc.o -MF CMakeFiles/_hpmc.dir/UpdaterBoxMC.cc.o.d -o CMakeFiles/_hpmc.dir/UpdaterBoxMC.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterBoxMC.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_faceted_ellipsoid.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_faceted_ellipsoid.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeUnion; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/hpmc/CMakeFiles/_hpmc.dir/UpdaterQuickCompress.cc.o --- [ 67%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/UpdaterQuickCompress.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/UpdaterQuickCompress.cc.o -MF CMakeFiles/_hpmc.dir/UpdaterQuickCompress.cc.o.d -o CMakeFiles/_hpmc.dir/UpdaterQuickCompress.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterQuickCompress.cc --- hoomd/md/CMakeFiles/_md.dir/all --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/EvaluatorPairALJ.h:12, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPairALJ2.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h: In instantiation of 'void hoomd::md::detail::s2d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 3; hoomd::Scalar = double]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:380:48: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:216:13: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:216:23: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:225:13: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:225:23: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h: In instantiation of 'void hoomd::md::detail::s1d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 3; hoomd::Scalar = double]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:284:26: required from 'void hoomd::md::detail::s2d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 3; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:380:48: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:122:12: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] if (abs(t[1]) > abs(neg_tI)) ~~~^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:122:25: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(t[1]) > abs(neg_tI)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:128:12: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] if (abs(t[2]) > abs(neg_tI)) ~~~^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:128:25: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(t[2]) > abs(neg_tI)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h: In instantiation of 'void hoomd::md::detail::s1d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 2; hoomd::Scalar = double]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:455:18: required from 'void hoomd::md::detail::sv_subalgorithm(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 2; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:763:34: required from 'void hoomd::md::detail::gjk(const hoomd::ManagedArray >&, const hoomd::ManagedArray >&, hoomd::vec3&, hoomd::vec3&, hoomd::vec3&, bool&, bool&, const Scalar (&)[3][3], const Scalar (&)[3][3], const hoomd::quat&, const hoomd::quat&, const hoomd::vec3&, const hoomd::vec3&, const hoomd::vec3&, bool, bool) [with unsigned int ndim = 2; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/EvaluatorPairALJ.h:558:26: required from 'bool hoomd::md::EvaluatorPairALJ::evaluate(hoomd::Scalar3&, hoomd::Scalar&, bool, hoomd::Scalar3&, hoomd::Scalar3&) [with unsigned int ndim = 2; hoomd::Scalar3 = double3; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPair.h:600:22: required from 'void hoomd::md::AnisoPotentialPair::computeForces(uint64_t) [with aniso_evaluator = hoomd::md::EvaluatorPairALJ<2>; uint64_t = long unsigned int]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPair.h:473:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:122:12: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] if (abs(t[1]) > abs(neg_tI)) ~~~^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:122:25: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(t[1]) > abs(neg_tI)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:128:12: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] if (abs(t[2]) > abs(neg_tI)) ~~~^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:128:25: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(t[2]) > abs(neg_tI)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h: In instantiation of 'void hoomd::md::detail::s2d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 2; hoomd::Scalar = double]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:459:18: required from 'void hoomd::md::detail::sv_subalgorithm(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 2; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:763:34: required from 'void hoomd::md::detail::gjk(const hoomd::ManagedArray >&, const hoomd::ManagedArray >&, hoomd::vec3&, hoomd::vec3&, hoomd::vec3&, bool&, bool&, const Scalar (&)[3][3], const Scalar (&)[3][3], const hoomd::quat&, const hoomd::quat&, const hoomd::vec3&, const hoomd::vec3&, const hoomd::vec3&, bool, bool) [with unsigned int ndim = 2; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/EvaluatorPairALJ.h:558:26: required from 'bool hoomd::md::EvaluatorPairALJ::evaluate(hoomd::Scalar3&, hoomd::Scalar&, bool, hoomd::Scalar3&, hoomd::Scalar3&) [with unsigned int ndim = 2; hoomd::Scalar3 = double3; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPair.h:600:22: required from 'void hoomd::md::AnisoPotentialPair::computeForces(uint64_t) [with aniso_evaluator = hoomd::md::EvaluatorPairALJ<2>; uint64_t = long unsigned int]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPair.h:473:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:216:13: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:216:23: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:225:13: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:225:23: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~~~~~ --- hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairALJ3.cc.o --- [ 67%] Building CXX object hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairALJ3.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairALJ3.cc.o -MF CMakeFiles/_md.dir/AnisoPotentialPairALJ3.cc.o.d -o CMakeFiles/_md.dir/AnisoPotentialPairALJ3.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPairALJ3.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_convex_polyhedron.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_convex_polyhedron.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeUnion; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/hpmc/CMakeFiles/_hpmc.dir/IntegratorHPMC.cc.o --- [ 68%] Building CXX object hoomd/hpmc/CMakeFiles/_hpmc.dir/IntegratorHPMC.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_hpmc_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/hpmc/CMakeFiles/_hpmc.dir/IntegratorHPMC.cc.o -MF CMakeFiles/_hpmc.dir/IntegratorHPMC.cc.o.d -o CMakeFiles/_hpmc.dir/IntegratorHPMC.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMC.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_sphinx.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_sphinx.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeSphinx; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairDipole.cc.o --- [ 68%] Building CXX object hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairDipole.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairDipole.cc.o -MF CMakeFiles/_md.dir/AnisoPotentialPairDipole.cc.o.d -o CMakeFiles/_md.dir/AnisoPotentialPairDipole.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPairDipole.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_simple_polygon.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_simple_polygon.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeSimplePolygon; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairGB.cc.o --- [ 69%] Building CXX object hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairGB.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairGB.cc.o -MF CMakeFiles/_md.dir/AnisoPotentialPairGB.cc.o.d -o CMakeFiles/_md.dir/AnisoPotentialPairGB.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPairGB.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_faceted_ellipsoid.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_faceted_ellipsoid.cc:17: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeFacetedEllipsoid; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/AlchemyData.cc.o --- [ 69%] Building CXX object hoomd/md/CMakeFiles/_md.dir/AlchemyData.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/AlchemyData.cc.o -MF CMakeFiles/_md.dir/AlchemyData.cc.o.d -o CMakeFiles/_md.dir/AlchemyData.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AlchemyData.cc --- hoomd/md/CMakeFiles/_md.dir/AnisoPotentialPairALJ3.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/EvaluatorPairALJ.h:12, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/AnisoPotentialPairALJ3.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h: In instantiation of 'void hoomd::md::detail::s2d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 3; hoomd::Scalar = double]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:380:48: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:216:13: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:216:23: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:225:13: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:225:23: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(mu) > abs(mu_max)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h: In instantiation of 'void hoomd::md::detail::s1d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 3; hoomd::Scalar = double]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:284:26: required from 'void hoomd::md::detail::s2d(hoomd::vec3*, unsigned int&, hoomd::Scalar*) [with unsigned int ndim = 3; hoomd::Scalar = double]' /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:380:48: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:122:12: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] if (abs(t[1]) > abs(neg_tI)) ~~~^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:122:25: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(t[1]) > abs(neg_tI)) ^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:128:12: warning: conversion from 'double' to 'int' may change value [-Wfloat-conversion] if (abs(t[2]) > abs(neg_tI)) ~~~^~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/GJK_SV.h:128:25: warning: conversion from 'hoomd::Scalar' {aka 'double'} to 'int' may change value [-Wfloat-conversion] if (abs(t[2]) > abs(neg_tI)) ^~~~~~ --- hoomd/md/CMakeFiles/_md.dir/BondTablePotential.cc.o --- [ 69%] Building CXX object hoomd/md/CMakeFiles/_md.dir/BondTablePotential.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/BondTablePotential.cc.o -MF CMakeFiles/_md.dir/BondTablePotential.cc.o.d -o CMakeFiles/_md.dir/BondTablePotential.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/BondTablePotential.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/ShapeUtils.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphere.h:6, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:6, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.h:12, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.h:12, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.h:15, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeUtils.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/CommunicatorGrid.cc.o --- [ 69%] Building CXX object hoomd/md/CMakeFiles/_md.dir/CommunicatorGrid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/CommunicatorGrid.cc.o -MF CMakeFiles/_md.dir/CommunicatorGrid.cc.o.d -o CMakeFiles/_md.dir/CommunicatorGrid.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/CommunicatorGrid.cc --- hoomd/md/CMakeFiles/_md.dir/ComputeThermo.cc.o --- [ 69%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ComputeThermo.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ComputeThermo.cc.o -MF CMakeFiles/_md.dir/ComputeThermo.cc.o.d -o CMakeFiles/_md.dir/ComputeThermo.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ComputeThermo.cc --- hoomd/md/CMakeFiles/_md.dir/ComputeThermoHMA.cc.o --- [ 70%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ComputeThermoHMA.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ComputeThermoHMA.cc.o -MF CMakeFiles/_md.dir/ComputeThermoHMA.cc.o.d -o CMakeFiles/_md.dir/ComputeThermoHMA.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ComputeThermoHMA.cc --- hoomd/md/CMakeFiles/_md.dir/ConstantForceCompute.cc.o --- [ 70%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ConstantForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ConstantForceCompute.cc.o -MF CMakeFiles/_md.dir/ConstantForceCompute.cc.o.d -o CMakeFiles/_md.dir/ConstantForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ConstantForceCompute.cc --- hoomd/md/CMakeFiles/_md.dir/CosineSqAngleForceCompute.cc.o --- [ 70%] Building CXX object hoomd/md/CMakeFiles/_md.dir/CosineSqAngleForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/CosineSqAngleForceCompute.cc.o -MF CMakeFiles/_md.dir/CosineSqAngleForceCompute.cc.o.d -o CMakeFiles/_md.dir/CosineSqAngleForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/CosineSqAngleForceCompute.cc --- hoomd/md/CMakeFiles/_md.dir/CustomForceCompute.cc.o --- [ 70%] Building CXX object hoomd/md/CMakeFiles/_md.dir/CustomForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/CustomForceCompute.cc.o -MF CMakeFiles/_md.dir/CustomForceCompute.cc.o.d -o CMakeFiles/_md.dir/CustomForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/CustomForceCompute.cc --- hoomd/md/CMakeFiles/_md.dir/EvaluatorWalls.cc.o --- [ 70%] Building CXX object hoomd/md/CMakeFiles/_md.dir/EvaluatorWalls.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/EvaluatorWalls.cc.o -MF CMakeFiles/_md.dir/EvaluatorWalls.cc.o.d -o CMakeFiles/_md.dir/EvaluatorWalls.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/EvaluatorWalls.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/ExternalFieldWall.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.h:14, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.h:14, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.h:14, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.h:14, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.h:14, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.h:14, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.h:14, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ExternalFieldWall.cc:4: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/FIREEnergyMinimizer.cc.o --- [ 71%] Building CXX object hoomd/md/CMakeFiles/_md.dir/FIREEnergyMinimizer.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/FIREEnergyMinimizer.cc.o -MF CMakeFiles/_md.dir/FIREEnergyMinimizer.cc.o.d -o CMakeFiles/_md.dir/FIREEnergyMinimizer.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/FIREEnergyMinimizer.cc --- hoomd/md/CMakeFiles/_md.dir/ForceComposite.cc.o --- [ 71%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ForceComposite.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ForceComposite.cc.o -MF CMakeFiles/_md.dir/ForceComposite.cc.o.d -o CMakeFiles/_md.dir/ForceComposite.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ForceComposite.cc --- hoomd/md/CMakeFiles/_md.dir/ForceDistanceConstraint.cc.o --- [ 71%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ForceDistanceConstraint.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ForceDistanceConstraint.cc.o -MF CMakeFiles/_md.dir/ForceDistanceConstraint.cc.o.d -o CMakeFiles/_md.dir/ForceDistanceConstraint.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ForceDistanceConstraint.cc --- hoomd/md/CMakeFiles/_md.dir/HalfStepHook.cc.o --- [ 71%] Building CXX object hoomd/md/CMakeFiles/_md.dir/HalfStepHook.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/HalfStepHook.cc.o -MF CMakeFiles/_md.dir/HalfStepHook.cc.o.d -o CMakeFiles/_md.dir/HalfStepHook.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/HalfStepHook.cc --- hoomd/md/CMakeFiles/_md.dir/HarmonicAngleForceCompute.cc.o --- [ 72%] Building CXX object hoomd/md/CMakeFiles/_md.dir/HarmonicAngleForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/HarmonicAngleForceCompute.cc.o -MF CMakeFiles/_md.dir/HarmonicAngleForceCompute.cc.o.d -o CMakeFiles/_md.dir/HarmonicAngleForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/HarmonicAngleForceCompute.cc --- hoomd/md/CMakeFiles/_md.dir/HarmonicDihedralForceCompute.cc.o --- [ 72%] Building CXX object hoomd/md/CMakeFiles/_md.dir/HarmonicDihedralForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/HarmonicDihedralForceCompute.cc.o -MF CMakeFiles/_md.dir/HarmonicDihedralForceCompute.cc.o.d -o CMakeFiles/_md.dir/HarmonicDihedralForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/HarmonicDihedralForceCompute.cc --- hoomd/md/CMakeFiles/_md.dir/HarmonicImproperForceCompute.cc.o --- [ 72%] Building CXX object hoomd/md/CMakeFiles/_md.dir/HarmonicImproperForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/HarmonicImproperForceCompute.cc.o -MF CMakeFiles/_md.dir/HarmonicImproperForceCompute.cc.o.d -o CMakeFiles/_md.dir/HarmonicImproperForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/HarmonicImproperForceCompute.cc --- hoomd/md/CMakeFiles/_md.dir/IntegrationMethodTwoStep.cc.o --- [ 72%] Building CXX object hoomd/md/CMakeFiles/_md.dir/IntegrationMethodTwoStep.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/IntegrationMethodTwoStep.cc.o -MF CMakeFiles/_md.dir/IntegrationMethodTwoStep.cc.o.d -o CMakeFiles/_md.dir/IntegrationMethodTwoStep.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/IntegrationMethodTwoStep.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_ellipsoid.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeEllipsoid; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/IntegratorTwoStep.cc.o --- [ 72%] Building CXX object hoomd/md/CMakeFiles/_md.dir/IntegratorTwoStep.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/IntegratorTwoStep.cc.o -MF CMakeFiles/_md.dir/IntegratorTwoStep.cc.o.d -o CMakeFiles/_md.dir/IntegratorTwoStep.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/IntegratorTwoStep.cc --- hoomd/md/CMakeFiles/_md.dir/ManifoldZCylinder.cc.o --- [ 73%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ManifoldZCylinder.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ManifoldZCylinder.cc.o -MF CMakeFiles/_md.dir/ManifoldZCylinder.cc.o.d -o CMakeFiles/_md.dir/ManifoldZCylinder.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ManifoldZCylinder.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_union_sphere.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_union_sphere.cc:17: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeUnion; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/ManifoldDiamond.cc.o --- [ 73%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ManifoldDiamond.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ManifoldDiamond.cc.o -MF CMakeFiles/_md.dir/ManifoldDiamond.cc.o.d -o CMakeFiles/_md.dir/ManifoldDiamond.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ManifoldDiamond.cc --- hoomd/md/CMakeFiles/_md.dir/ManifoldEllipsoid.cc.o --- [ 73%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ManifoldEllipsoid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ManifoldEllipsoid.cc.o -MF CMakeFiles/_md.dir/ManifoldEllipsoid.cc.o.d -o CMakeFiles/_md.dir/ManifoldEllipsoid.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ManifoldEllipsoid.cc --- hoomd/md/CMakeFiles/_md.dir/ManifoldGyroid.cc.o --- [ 73%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ManifoldGyroid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ManifoldGyroid.cc.o -MF CMakeFiles/_md.dir/ManifoldGyroid.cc.o.d -o CMakeFiles/_md.dir/ManifoldGyroid.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ManifoldGyroid.cc --- hoomd/md/CMakeFiles/_md.dir/ManifoldXYPlane.cc.o --- [ 73%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ManifoldXYPlane.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/ManifoldXYPlane.cc.o -MF CMakeFiles/_md.dir/ManifoldXYPlane.cc.o.d -o CMakeFiles/_md.dir/ManifoldXYPlane.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/ManifoldXYPlane.cc --- hoomd/md/CMakeFiles/_md.dir/ManifoldPrimitive.cc.o --- [ 74%] Building CXX object hoomd/md/CMakeFiles/_md.dir/ManifoldPrimitive.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ 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-isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/NeighborListBinned.cc.o -MF CMakeFiles/_md.dir/NeighborListBinned.cc.o.d -o CMakeFiles/_md.dir/NeighborListBinned.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/NeighborListBinned.cc --- hoomd/md/CMakeFiles/_md.dir/NeighborList.cc.o --- [ 75%] Building CXX object hoomd/md/CMakeFiles/_md.dir/NeighborList.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/NeighborList.cc.o -MF CMakeFiles/_md.dir/NeighborList.cc.o.d -o CMakeFiles/_md.dir/NeighborList.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/NeighborList.cc --- hoomd/md/CMakeFiles/_md.dir/NeighborListStencil.cc.o --- [ 75%] Building CXX object hoomd/md/CMakeFiles/_md.dir/NeighborListStencil.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS 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75%] Building CXX object hoomd/md/CMakeFiles/_md.dir/OPLSDihedralForceCompute.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/OPLSDihedralForceCompute.cc.o -MF CMakeFiles/_md.dir/OPLSDihedralForceCompute.cc.o.d -o 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-isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/TableDihedralForceCompute.cc.o -MF CMakeFiles/_md.dir/TableDihedralForceCompute.cc.o.d -o CMakeFiles/_md.dir/TableDihedralForceCompute.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/TableDihedralForceCompute.cc --- hoomd/md/CMakeFiles/_md.dir/TwoStepBD.cc.o --- [ 76%] Building CXX object hoomd/md/CMakeFiles/_md.dir/TwoStepBD.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS 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hoomd/md/CMakeFiles/_md.dir/TwoStepConstantVolume.cc.o -MF CMakeFiles/_md.dir/TwoStepConstantVolume.cc.o.d -o CMakeFiles/_md.dir/TwoStepConstantVolume.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/TwoStepConstantVolume.cc --- hoomd/md/CMakeFiles/_md.dir/TwoStepConstantPressure.cc.o --- [ 77%] Building CXX object hoomd/md/CMakeFiles/_md.dir/TwoStepConstantPressure.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/TwoStepConstantPressure.cc.o -MF CMakeFiles/_md.dir/TwoStepConstantPressure.cc.o.d -o CMakeFiles/_md.dir/TwoStepConstantPressure.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/TwoStepConstantPressure.cc --- hoomd/md/CMakeFiles/_md.dir/Thermostat.cc.o --- [ 77%] Building CXX object hoomd/md/CMakeFiles/_md.dir/Thermostat.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include 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/usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/TwoStepNVTAlchemy.cc.o -MF CMakeFiles/_md.dir/TwoStepNVTAlchemy.cc.o.d -o CMakeFiles/_md.dir/TwoStepNVTAlchemy.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/md/TwoStepNVTAlchemy.cc --- hoomd/md/CMakeFiles/_md.dir/WallData.cc.o --- [ 78%] Building CXX object hoomd/md/CMakeFiles/_md.dir/WallData.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS 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object hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeCylinder.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeCylinder.cc.o -MF CMakeFiles/_md.dir/export_ActiveForceConstraintComputeCylinder.cc.o.d -o CMakeFiles/_md.dir/export_ActiveForceConstraintComputeCylinder.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_ActiveForceConstraintComputeCylinder.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDCylinder.cc.o --- [ 78%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDCylinder.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDCylinder.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLEBDCylinder.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLEBDCylinder.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLEBDCylinder.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinCylinder.cc.o --- [ 78%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinCylinder.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinCylinder.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLELangevinCylinder.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLELangevinCylinder.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLELangevinCylinder.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVECylinder.cc.o --- [ 79%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVECylinder.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVECylinder.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLENVECylinder.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLENVECylinder.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLENVECylinder.cc --- hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeDiamond.cc.o --- [ 79%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeDiamond.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeDiamond.cc.o -MF CMakeFiles/_md.dir/export_ActiveForceConstraintComputeDiamond.cc.o.d -o CMakeFiles/_md.dir/export_ActiveForceConstraintComputeDiamond.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_ActiveForceConstraintComputeDiamond.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDDiamond.cc.o --- [ 79%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDDiamond.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDDiamond.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLEBDDiamond.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLEBDDiamond.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLEBDDiamond.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinDiamond.cc.o --- [ 79%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinDiamond.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinDiamond.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLELangevinDiamond.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLELangevinDiamond.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLELangevinDiamond.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEDiamond.cc.o --- [ 79%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEDiamond.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEDiamond.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLENVEDiamond.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLENVEDiamond.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLENVEDiamond.cc --- hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeEllipsoid.cc.o --- [ 80%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeEllipsoid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeEllipsoid.cc.o -MF CMakeFiles/_md.dir/export_ActiveForceConstraintComputeEllipsoid.cc.o.d -o CMakeFiles/_md.dir/export_ActiveForceConstraintComputeEllipsoid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_ActiveForceConstraintComputeEllipsoid.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDEllipsoid.cc.o --- [ 80%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDEllipsoid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDEllipsoid.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLEBDEllipsoid.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLEBDEllipsoid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLEBDEllipsoid.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinEllipsoid.cc.o --- [ 80%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinEllipsoid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinEllipsoid.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLELangevinEllipsoid.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLELangevinEllipsoid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLELangevinEllipsoid.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEEllipsoid.cc.o --- [ 80%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEEllipsoid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEEllipsoid.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLENVEEllipsoid.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLENVEEllipsoid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLENVEEllipsoid.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_spheropolyhedron.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_spheropolyhedron.cc:18: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeSpheropolyhedron; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeGyroid.cc.o --- [ 81%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeGyroid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeGyroid.cc.o -MF CMakeFiles/_md.dir/export_ActiveForceConstraintComputeGyroid.cc.o.d -o CMakeFiles/_md.dir/export_ActiveForceConstraintComputeGyroid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_ActiveForceConstraintComputeGyroid.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDGyroid.cc.o --- [ 81%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDGyroid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDGyroid.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLEBDGyroid.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLEBDGyroid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLEBDGyroid.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinGyroid.cc.o --- [ 81%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinGyroid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinGyroid.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLELangevinGyroid.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLELangevinGyroid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLELangevinGyroid.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEGyroid.cc.o --- [ 81%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEGyroid.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEGyroid.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLENVEGyroid.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLENVEGyroid.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLENVEGyroid.cc --- hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputePlane.cc.o --- [ 81%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputePlane.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputePlane.cc.o -MF CMakeFiles/_md.dir/export_ActiveForceConstraintComputePlane.cc.o.d -o CMakeFiles/_md.dir/export_ActiveForceConstraintComputePlane.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_ActiveForceConstraintComputePlane.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDPlane.cc.o --- [ 82%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDPlane.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDPlane.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLEBDPlane.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLEBDPlane.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLEBDPlane.cc--- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPlane.cc.o --- [ 82%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPlane.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPlane.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPlane.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPlane.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLELangevinPlane.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEPlane.cc.o --- [ 82%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEPlane.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEPlane.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLENVEPlane.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLENVEPlane.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLENVEPlane.cc --- hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputePrimitive.cc.o --- [ 82%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputePrimitive.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputePrimitive.cc.o -MF CMakeFiles/_md.dir/export_ActiveForceConstraintComputePrimitive.cc.o.d -o CMakeFiles/_md.dir/export_ActiveForceConstraintComputePrimitive.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_ActiveForceConstraintComputePrimitive.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDPrimitive.cc.o --- [ 82%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDPrimitive.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDPrimitive.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLEBDPrimitive.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLEBDPrimitive.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLEBDPrimitive.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPrimitive.cc.o --- [ 83%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPrimitive.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPrimitive.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPrimitive.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLELangevinPrimitive.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLELangevinPrimitive.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEPrimitive.cc.o --- [ 83%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEPrimitive.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVEPrimitive.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLENVEPrimitive.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLENVEPrimitive.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLENVEPrimitive.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- --- hoomd/hpmc/CMakeFiles/_hpmc.dir/module_convex_polyhedron.cc.o --- In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/Moves.h:10, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:18, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'bool hoomd::hpmc::detail::overlap(const hoomd::hpmc::detail::OBB&, const hoomd::hpmc::detail::OBB&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:297:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][0] = fabs(r.row0.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:298:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][1] = fabs(r.row0.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:299:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[0][2] = fabs(r.row0.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:309:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][0] = fabs(r.row1.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:310:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][1] = fabs(r.row1.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:311:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[1][2] = fabs(r.row1.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:318:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][0] = fabs(r.row2.x) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:319:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][1] = fabs(r.row2.y) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:320:33: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] rabs[2][2] = fabs(r.row2.z) + eps; ~~~~~~~~~~~~~~~^~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::merge_two_spheres(hoomd::vec3&, hoomd::ShortReal, hoomd::vec3, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:574:26: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal dist = sqrt(dot(d, d)); ~~~~^~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h: In function 'hoomd::hpmc::detail::OBB hoomd::hpmc::detail::compute_obb(const std::vector >&, const std::vector&, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/OBB.h:798:49: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal area = ShortReal(0.5) * sqrt(cross.dotProduct(cross)); ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:4, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h: In constructor 'hoomd::hpmc::detail::PolygonVertices::PolygonVertices(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolygon.h:115:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:5, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h: In member function 'void hoomd::hpmc::detail::PolyhedronVertices::setVerts(const std::vector >&, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeConvexPolyhedron.h:110:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:8, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h: In constructor 'hoomd::hpmc::detail::TriangleMesh::TriangleMesh(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapePolyhedron.h:193:22: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] diameter = 2 * (sqrt(radius_sq) + sweep_radius); ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:19, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t2(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4119:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt(4 * (ab2 * ac2 + ab2 * bc2 + ac2 * bc2) - (ab2 + ac2 + bc2) * (ab2 + ac2 + bc2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 4; ^~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::t3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4144:12: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] return sqrt((abTcd + acTbd + adTbc) * (abPcd + acPbd + adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - 2 * (abTcd * abPcd + acTbd * acPbd + adTbc * adPbc) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  - (ab2 * ac2 * bc2 + ab2 * ad2 * bd2 + ac2 * ad2 * cd2 + bc2 * bd2 * cd2)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  / 12; ^~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::xol3(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4390:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tar = acos(cos3(ar, ab, ac, br, cr, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4391:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbr = acos(cos3(br, ab, bc, ar, cr, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4392:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcr = acos(cos3(cr, ac, bc, ar, br, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4393:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, br, ac, cr, ar) * sign(ar)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4394:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ar, bc, cr, br) * sign(br)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4395:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ar, bc, br, cr) * sign(cr)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h: In function 'hoomd::ShortReal hoomd::hpmc::detail::yol4(hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal, hoomd::ShortReal)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4825:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tad = acos(cos3(ad, ab, ac, bd, cd, bc) * sign(bc)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4826:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbd = acos(cos3(bd, ab, bc, ad, cd, ac) * sign(ac)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4827:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tcd = acos(cos3(cd, ac, bc, ad, bd, ab) * sign(ab)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4828:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tbc = acos(cos3(bc, ab, bd, ac, cd, ad) * sign(ad)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4829:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tac = acos(cos3(ac, ab, ad, bc, cd, bd) * sign(bd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/SphinxOverlap.h:4830:25: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal tab = acos(cos3(ab, ac, ad, bc, bd, cd) * sign(cd)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:13, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::detail::SphinxParams::SphinxParams(pybind11::dict, bool)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:115:31: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] ShortReal n = sqrt(dot(center_vec, center_vec)); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h: In constructor 'hoomd::hpmc::ShapeSphinx::ShapeSphinx(const hoomd::quat&, const param_type&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ShapeSphinx.h:194:65: warning: conversion from 'double' to 'hoomd::ShortReal' {aka 'float'} may change value [-Wfloat-conversion] d[(i - 1) * i / 2 + j] = ShortReal(s[i] * s[j]) * sqrt(D[(i - 1) * i / 2 + j]); ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/IntegratorHPMCMono.h:20, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/ComputeFreeVolume.h:11, from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:5: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h: In member function 'void hoomd::hpmc::gsd_shape_schema::read(std::shared_ptr, uint64_t, const string&, unsigned int, hoomd::hpmc::param_array&)': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/GSDHPMCSchema.h:567:27: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] dsq = fmax(shape[i].x[v] * shape[i].x[v] + shape[i].y[v] * shape[i].y[v], dsq); ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/module_convex_polyhedron.cc:19: /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h: In instantiation of 'void hoomd::hpmc::UpdaterClusters::update(uint64_t) [with Shape = hoomd::hpmc::ShapeConvexPolyhedron; uint64_t = long unsigned int]': /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1544:6: required from here /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/hpmc/UpdaterClusters.h:1714:33: warning: conversion from 'double' to 'float' may change value [-Wfloat-conversion] float pij = 1.0f-exp(-delU); ~~~~^~~~~~~~~~~ --- hoomd/hpmc/_hpmc.cpython-39.so --- [ 83%] Linking CXX shared library _hpmc.cpython-39.so cd /construction/science/py-hoomd-blue/.build/hoomd/hpmc && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_hpmc.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -Wl,-rpath=/usr/local/lib/gcc12 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc12 -lexecinfo -L/usr/local/lib -shared -Wl,-soname,_hpmc.cpython-39.so -o _hpmc.cpython-39.so CMakeFiles/_hpmc.dir/module.cc.o CMakeFiles/_hpmc.dir/module_sphere.cc.o CMakeFiles/_hpmc.dir/module_convex_polygon.cc.o CMakeFiles/_hpmc.dir/module_simple_polygon.cc.o CMakeFiles/_hpmc.dir/module_spheropolygon.cc.o CMakeFiles/_hpmc.dir/module_polyhedron.cc.o CMakeFiles/_hpmc.dir/module_ellipsoid.cc.o CMakeFiles/_hpmc.dir/module_faceted_ellipsoid.cc.o CMakeFiles/_hpmc.dir/module_sphinx.cc.o CMakeFiles/_hpmc.dir/module_union_convex_polyhedron.cc.o CMakeFiles/_hpmc.dir/module_union_faceted_ellipsoid.cc.o CMakeFiles/_hpmc.dir/module_union_sphere.cc.o CMakeFiles/_hpmc.dir/module_convex_polyhedron.cc.o CMakeFiles/_hpmc.dir/module_convex_spheropolyhedron.cc.o CMakeFiles/_hpmc.dir/ExternalFieldWall.cc.o CMakeFiles/_hpmc.dir/ShapeUtils.cc.o CMakeFiles/_hpmc.dir/UpdaterBoxMC.cc.o CMakeFiles/_hpmc.dir/UpdaterQuickCompress.cc.o CMakeFiles/_hpmc.dir/IntegratorHPMC.cc.o -Wl,-z,origin,-rpath,/construction/science/py-hoomd-blue/.build/hoomd ../_hoomd.cpython-39.so ../libquickhull.so /usr/local/lib/libtbb.so.12.9 /usr/local/lib/libmpicxx.so /usr/local/lib/libmpi.so --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeSphere.cc.o --- [ 83%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeSphere.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_ActiveForceConstraintComputeSphere.cc.o -MF CMakeFiles/_md.dir/export_ActiveForceConstraintComputeSphere.cc.o.d -o CMakeFiles/_md.dir/export_ActiveForceConstraintComputeSphere.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_ActiveForceConstraintComputeSphere.cc --- hoomd/hpmc/CMakeFiles/_hpmc.dir/all --- [ 83%] Built target _hpmc --- hoomd/md/CMakeFiles/_md.dir/all --- --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDSphere.cc.o --- [ 83%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDSphere.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLEBDSphere.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLEBDSphere.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLEBDSphere.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLEBDSphere.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinSphere.cc.o --- --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVESphere.cc.o --- --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinSphere.cc.o --- [ 83%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinSphere.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLELangevinSphere.cc.o -MF CMakeFiles/_md.dir/export_TwoStepRATTLELangevinSphere.cc.o.d -o CMakeFiles/_md.dir/export_TwoStepRATTLELangevinSphere.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_TwoStepRATTLELangevinSphere.cc --- hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVESphere.cc.o --- [ 84%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_TwoStepRATTLENVESphere.cc.o cd 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-Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialBondFENE.cc.o -MF CMakeFiles/_md.dir/export_PotentialBondFENE.cc.o.d -o CMakeFiles/_md.dir/export_PotentialBondFENE.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialBondFENE.cc --- hoomd/md/CMakeFiles/_md.dir/export_PotentialBondTether.cc.o --- [ 84%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialBondTether.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialBondTether.cc.o -MF CMakeFiles/_md.dir/export_PotentialBondTether.cc.o.d -o CMakeFiles/_md.dir/export_PotentialBondTether.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialBondTether.cc --- hoomd/md/CMakeFiles/_md.dir/export_PotentialMeshBondHarmonic.cc.o --- [ 84%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialMeshBondHarmonic.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS 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-I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialPairDPDThermoDPD.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairDPDThermoDPD.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairDPDThermoDPD.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairDPDThermoDPD.cc --- hoomd/md/CMakeFiles/_md.dir/export_PotentialPairDPDThermoLJ.cc.o --- [ 88%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairDPDThermoLJ.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && 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hoomd/md/CMakeFiles/_md.dir/export_PotentialPairBuckingham.cc.o --- [ 88%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairBuckingham.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialPairBuckingham.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairBuckingham.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairBuckingham.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairBuckingham.cc --- hoomd/md/CMakeFiles/_md.dir/export_PotentialPairLJ.cc.o --- [ 88%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairLJ.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialPairLJ.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairLJ.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairLJ.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairLJ.cc --- hoomd/md/CMakeFiles/_md.dir/export_PotentialPairLJ1208.cc.o --- [ 89%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairLJ1208.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem 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-I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialPairLJ0804.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairLJ0804.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairLJ0804.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairLJ0804.cc --- hoomd/md/CMakeFiles/_md.dir/export_PotentialPairGauss.cc.o --- [ 89%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairGauss.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ 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/usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialPairMie.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairMie.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairMie.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairMie.cc --- hoomd/md/CMakeFiles/_md.dir/export_PotentialPairReactionField.cc.o --- [ 91%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairReactionField.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 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hoomd/md/CMakeFiles/_md.dir/export_PotentialPairFourier.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairFourier.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairFourier.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairFourier.cc--- hoomd/md/CMakeFiles/_md.dir/export_PotentialPairOPP.cc.o --- [ 92%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairOPP.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_md_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result 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-I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialPairLJGauss.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairLJGauss.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairLJGauss.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairLJGauss.cc--- hoomd/md/CMakeFiles/_md.dir/export_PotentialPairForceShiftedLJ.cc.o --- [ 92%] Building CXX object hoomd/md/CMakeFiles/_md.dir/export_PotentialPairForceShiftedLJ.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && 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/usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/export_PotentialPairAlchemicalLJGauss.cc.o -MF CMakeFiles/_md.dir/export_PotentialPairAlchemicalLJGauss.cc.o.d -o CMakeFiles/_md.dir/export_PotentialPairAlchemicalLJGauss.cc.o -c /construction/science/py-hoomd-blue/.build/hoomd/md/export_PotentialPairAlchemicalLJGauss.cc --- hoomd/md/CMakeFiles/_md.dir/__/extern/dfftlib/src/dfft_common.cc.o --- [ 93%] Building CXX object hoomd/md/CMakeFiles/_md.dir/__/extern/dfftlib/src/dfft_common.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/md/CMakeFiles/_md.dir/__/extern/dfftlib/src/bare_fft.cc.o -MF CMakeFiles/_md.dir/__/extern/dfftlib/src/bare_fft.cc.o.d -o CMakeFiles/_md.dir/__/extern/dfftlib/src/bare_fft.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/extern/dfftlib/src/bare_fft.cc --- hoomd/md/_md.cpython-39.so --- [ 94%] Linking CXX shared library _md.cpython-39.so cd /construction/science/py-hoomd-blue/.build/hoomd/md && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_md.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion 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-fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/mpcd/CMakeFiles/_mpcd.dir/CellList.cc.o -MF CMakeFiles/_mpcd.dir/CellList.cc.o.d -o CMakeFiles/_mpcd.dir/CellList.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/CellList.cc --- hoomd/mpcd/CMakeFiles/_mpcd.dir/CollisionMethod.cc.o --- cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_mpcd_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas 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-I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/mpcd/CMakeFiles/_mpcd.dir/Integrator.cc.o -MF CMakeFiles/_mpcd.dir/Integrator.cc.o.d -o CMakeFiles/_mpcd.dir/Integrator.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/Integrator.cc --- hoomd/mpcd/CMakeFiles/_mpcd.dir/ParticleData.cc.o --- [ 97%] Building CXX object hoomd/mpcd/CMakeFiles/_mpcd.dir/ParticleData.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB 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hoomd/mpcd/CMakeFiles/_mpcd.dir/ParticleDataSnapshot.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_mpcd_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/mpcd/CMakeFiles/_mpcd.dir/ParticleDataSnapshot.cc.o -MF CMakeFiles/_mpcd.dir/ParticleDataSnapshot.cc.o.d -o CMakeFiles/_mpcd.dir/ParticleDataSnapshot.cc.o -c 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-fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/mpcd/CMakeFiles/_mpcd.dir/SlitPoreGeometryFiller.cc.o -MF CMakeFiles/_mpcd.dir/SlitPoreGeometryFiller.cc.o.d -o CMakeFiles/_mpcd.dir/SlitPoreGeometryFiller.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/SlitPoreGeometryFiller.cc --- hoomd/mpcd/CMakeFiles/_mpcd.dir/Sorter.cc.o --- [ 98%] Building CXX object hoomd/mpcd/CMakeFiles/_mpcd.dir/Sorter.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_mpcd_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/mpcd/CMakeFiles/_mpcd.dir/Sorter.cc.o -MF CMakeFiles/_mpcd.dir/Sorter.cc.o.d -o CMakeFiles/_mpcd.dir/Sorter.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/Sorter.cc --- hoomd/mpcd/CMakeFiles/_mpcd.dir/SRDCollisionMethod.cc.o --- --- hoomd/mpcd/CMakeFiles/_mpcd.dir/StreamingGeometry.cc.o --- --- hoomd/mpcd/CMakeFiles/_mpcd.dir/SRDCollisionMethod.cc.o --- [ 98%] Building CXX object hoomd/mpcd/CMakeFiles/_mpcd.dir/SRDCollisionMethod.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT 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hoomd/mpcd/CMakeFiles/_mpcd.dir/StreamingMethod.cc.o -MF CMakeFiles/_mpcd.dir/StreamingMethod.cc.o.d -o CMakeFiles/_mpcd.dir/StreamingMethod.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/StreamingMethod.cc --- hoomd/mpcd/CMakeFiles/_mpcd.dir/SystemData.cc.o --- [ 99%] Building CXX object hoomd/mpcd/CMakeFiles/_mpcd.dir/SystemData.cc.o cd /construction/science/py-hoomd-blue/.build/hoomd/mpcd && /usr/local/libexec/ccache/c++ -DEIGEN_MPL2_ONLY -DENABLE_MPI -DENABLE_TBB -DHOOMD_LONGREAL_SIZE=64 -DHOOMD_SHORTREAL_SIZE=32 -D_REENTRANT -D_mpcd_EXPORTS -I/construction/science/py-hoomd-blue/hoomd-blue-4.0.1 -I/construction/science/py-hoomd-blue/.build/hoomd/include -isystem /usr/local/include/python3.9 -isystem /usr/local/include/eigen3 -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++17 -fPIC -fvisibility=hidden -MD -MT hoomd/mpcd/CMakeFiles/_mpcd.dir/SystemData.cc.o -MF CMakeFiles/_mpcd.dir/SystemData.cc.o.d -o CMakeFiles/_mpcd.dir/SystemData.cc.o -c /construction/science/py-hoomd-blue/hoomd-blue-4.0.1/hoomd/mpcd/SystemData.cc --- hoomd/metal/CMakeFiles/_metal.dir/all --- --- hoomd/metal/_metal.cpython-39.so --- [ 99%] Linking CXX shared library _metal.cpython-39.so cd /construction/science/py-hoomd-blue/.build/hoomd/metal && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/_metal.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wall -Wconversion -Wno-sign-conversion -Wno-unknown-pragmas -Wno-deprecated-declarations -Wno-unused-result -fdiagnostics-color=always -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG 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/construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/include/hoomd/mpcd/SystemDataSnapshot.h -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/include/hoomd/mpcd/VirtualParticleFiller.h -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/pair_plugin/_pair_plugin.cpython-39.so -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/pair_plugin/__init__.py -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/pair_plugin/pair.py -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/pair_plugin/pytest/__init__.py -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/pair_plugin/pytest/test_example_pair.py -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/updater_plugin/_updater_plugin.cpython-39.so -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/updater_plugin/__init__.py -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/updater_plugin/update.py -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/updater_plugin/pytest/__init__.py -- Installing: /construction/science/py-hoomd-blue/stage/usr/local/lib/python3.9/site-packages/hoomd/updater_plugin/pytest/test_example_updater.py ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.9/site-packages/hoomd/_hoomd.cpython-39.so is linked to /usr/local/lib/libhwloc.so.15 from devel/hwloc2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhwloc.so:devel/hwloc2 Error: /usr/local/lib/python3.9/site-packages/hoomd/_hoomd.cpython-39.so is linked to /usr/local/lib/libepoll-shim.so.0 from devel/libepoll-shim but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libepoll-shim.so:devel/libepoll-shim Error: /usr/local/lib/python3.9/site-packages/hoomd/_hoomd.cpython-39.so is linked to /usr/local/lib/libjson-c.so.5 from devel/json-c but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libjson-c.so:devel/json-c Error: /usr/local/lib/python3.9/site-packages/hoomd/_hoomd.cpython-39.so is linked to /usr/local/lib/libpciaccess.so.0 from devel/libpciaccess but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpciaccess.so:devel/libpciaccess Error: /usr/local/lib/python3.9/site-packages/hoomd/_hoomd.cpython-39.so is linked to /usr/local/lib/libze_loader.so.1 from devel/level-zero but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libze_loader.so:devel/level-zero Error: /usr/local/lib/python3.9/site-packages/hoomd/_hoomd.cpython-39.so is linked to /usr/local/lib/libxml2.so.2 from textproc/libxml2 but it is not declared as a dependency Warning: you need USE_GNOME+=libxml2 Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-hoomd-blue-4.0.1 file 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