------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for py39-h5py-3.8.0_1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py XDG_CACHE_HOME=/construction/science/py-h5py/.cache HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-h5py/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/py-h5py XDG_CONFIG_HOME=/construction/science/py-h5py XDG_CACHE_HOME=/construction/science/py-h5py/.cache HOME=/construction/science/py-h5py TMPDIR="/tmp" PATH=/construction/science/py-h5py/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/py-h5py/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/py-h5py/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-h5py" EXAMPLESDIR="share/examples/py39-h5py" DATADIR="share/py39-h5py" WWWDIR="www/py39-h5py" ETCDIR="etc/py39-h5py" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-h5py DOCSDIR=/usr/local/share/doc/py39-h5py EXAMPLESDIR=/usr/local/share/examples/py39-h5py WWWDIR=/usr/local/www/py39-h5py ETCDIR=/usr/local/etc/py39-h5py SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/pkgconf-1.8.1,1.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-pkgconfig-1.5.5_1,1.pkg Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/py39-cython-0.29.35.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/hdf5-1.12.2_2,1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-h5py-3.8.0_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-h5py-3.8.0_1 for building => SHA256 Checksum OK for h5py-3.8.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-h5py-3.8.0_1 for building ===> Extracting for py39-h5py-3.8.0_1 => SHA256 Checksum OK for h5py-3.8.0.tar.gz. Extracted Memory Use: 2.07M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-h5py-3.8.0_1 ===> Applying ports patches for py39-h5py-3.8.0_1 from /xports/science/py-h5py/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on package: py39-pkgconfig>=0,1 - found ===> py39-h5py-3.8.0_1 depends on package: py39-numpy>=1.14.5,1 - found ===> py39-h5py-3.8.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-h5py-3.8.0_1 depends on package: pkgconf>=1.3.0_1 - found ===> py39-h5py-3.8.0_1 depends on executable: cython-3.9 - found ===> py39-h5py-3.8.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on package: py39-pkgconfig>=0,1 - found ===> py39-h5py-3.8.0_1 depends on package: py39-numpy>=1.14.5,1 - found ===> py39-h5py-3.8.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-h5py-3.8.0_1 depends on package: pkgconf>=1.3.0_1 - found ===> py39-h5py-3.8.0_1 depends on executable: cython-3.9 - found ===> py39-h5py-3.8.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/ccache - found ===> py39-h5py-3.8.0_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> Configuring for py39-h5py-3.8.0_1 /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-h5py-3.8.0_1 /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running build running build_py creating build creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/h5py copying h5py/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py copying h5py/h5py_warnings.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py copying h5py/ipy_completer.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py copying h5py/version.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py creating build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/base.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/compat.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/dims.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/files.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/filters.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/group.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/selections.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl copying h5py/_hl/vds.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl creating build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/common.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/conftest.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_attribute_create.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_attrs.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_attrs_data.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_base.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_big_endian_file.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_completions.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dataset.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dataset_getitem.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dataset_swmr.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_datatype.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dimension_scales.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_dtype.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_errors.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_file.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_file2.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_file_alignment.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_file_image.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_filters.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_group.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5f.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5o.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5p.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5pl.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_h5t.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_objects.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_ros3.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_selections.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests copying h5py/tests/test_slicing.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests creating build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files copying h5py/tests/data_files/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files creating build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds copying h5py/tests/data_files/vlen_string_dset.h5 -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files copying h5py/tests/data_files/vlen_string_dset_utc.h5 -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files copying h5py/tests/data_files/vlen_string_s390x.h5 -> build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files running build_ext Loading library to get build settings and version: /usr/local/lib/libhdf5.so ******************************************************************************** Summary of the h5py configuration HDF5 include dirs: [ '/usr/local/include' ] HDF5 library dirs: [ '/usr/local/lib' ] HDF5 Version: (1, 12, 2) MPI Enabled: False ROS3 VFD Enabled: False DIRECT VFD Enabled: False Rebuild Required: True MS-MPI Enabled: False MS-MPI include dirs: [] MS-MPI library dirs: [] ******************************************************************************** Executing api_gen rebuild of defs Updated /construction/science/py-h5py/h5py-3.8.0/h5py/config.pxi Executing cythonize() [ 1/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/_conv.pyx [ 2/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/_errors.pyx [ 3/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/_objects.pyx [ 4/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/_proxy.pyx [ 5/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/_selector.pyx [ 6/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/defs.pyx [ 7/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5.pyx [ 8/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5a.pyx [ 9/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5ac.pyx [10/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5d.pyx [11/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5ds.pyx [12/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5f.pyx [13/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5fd.pyx [14/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5g.pyx [15/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5i.pyx [16/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5l.pyx [17/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5o.pyx [18/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5p.pyx [19/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5pl.pyx [20/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5r.pyx [21/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5s.pyx [22/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5t.pyx [23/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/h5z.pyx [24/24] Cythonizing /construction/science/py-h5py/h5py-3.8.0/h5py/utils.pyx building 'h5py.defs' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0 creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/defs.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/defs.o h5py/defs.c: In function '__pyx_f_4h5py_4defs_H5Pget_driver_info': h5py/defs.c:27575:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_v_r = H5Pget_driver_info(__pyx_v_plist_id); ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/defs.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/defs.cpython-39.so building 'h5py._errors' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/_errors.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_errors.o h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_walk_cb': h5py/_errors.c:2081:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_3 = (__pyx_v_desc[0]).desc; ^ h5py/_errors.c: In function '__pyx_f_4h5py_7_errors_set_exception': h5py/_errors.c:2401:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ h5py/_errors.c:2484:13: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] __pyx_t_8 = __pyx_v_err.err.desc; ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_errors.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_errors.cpython-39.so building 'h5py._objects' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/_objects.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_objects.o h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_6release': h5py/_objects.c:3216:38: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] __pyx_t_1 = ((__pyx_v_self->_owner != PyThread_get_thread_ident()) != 0); ^~ h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_10__exit__': h5py/_objects.c:3434:38: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] __pyx_t_1 = ((__pyx_v_self->_owner != PyThread_get_thread_ident()) != 0); ^~ h5py/_objects.c: In function '__pyx_pf_4h5py_8_objects_9FastRLock_12_is_owned': h5py/_objects.c:3527:59: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] __pyx_t_1 = __Pyx_PyBool_FromLong((__pyx_v_self->_owner == PyThread_get_thread_ident())); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 63, __pyx_L1_error) ^~ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_objects.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_objects.cpython-39.so building 'h5py._proxy' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/_proxy.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_proxy.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_proxy.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_proxy.cpython-39.so building 'h5py.h5fd' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5fd.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5fd.o h5py/h5fd.c: In function '__pyx_f_4h5py_4h5fd_H5FD_fileobj_read': h5py/h5fd.c:3694:29: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] __pyx_t_6 = ((__pyx_t_9 == __pyx_v_size) != 0); ^~ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5fd.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5fd.cpython-39.so building 'h5py.h5z' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf creating build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf/lzf cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5z.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5z.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/lzf/lzf/lzf_c.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf/lzf/lzf_c.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/lzf/lzf/lzf_d.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf/lzf/lzf_d.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/lzf/lzf_filter.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf/lzf_filter.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5z.o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf/lzf/lzf_c.o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf/lzf/lzf_d.o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/lzf/lzf_filter.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5z.cpython-39.so building 'h5py.h5' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5.cpython-39.so building 'h5py.h5i' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5i.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5i.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5i.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5i.cpython-39.so building 'h5py.h5r' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5r.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5r.o h5py/h5r.c: In function '__pyx_pf_4h5py_3h5r_9Reference_2__nonzero__': h5py/h5r.c:3363:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) { ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5r.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5r.cpython-39.so building 'h5py.utils' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/utils.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/utils.o h5py/utils.c: In function '__pyx_f_4h5py_5utils_convert_tuple': h5py/utils.c:2860:27: warning: comparison of integer expressions of different signedness: 'Py_ssize_t' {aka 'long int'} and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] __pyx_t_2 = ((__pyx_t_1 != __pyx_v_rank) != 0); ^~ h5py/utils.c:2910:37: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { ^ h5py/utils.c: In function '__pyx_f_4h5py_5utils_convert_dims': h5py/utils.c:3102:33: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/utils.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/utils.cpython-39.so building 'h5py._selector' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/_selector.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_selector.o h5py/_selector.c: In function '__pyx_f_4h5py_9_selector_convert_bools': h5py/_selector.c:3236:33: warning: comparison of integer expressions of different signedness: 'int' and 'hsize_t' {aka 'long long unsigned int'} [-Wsign-compare] for (__pyx_t_4 = 0; __pyx_t_4 < __pyx_t_3; __pyx_t_4+=1) { ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_selector.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_selector.cpython-39.so building 'h5py._conv' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/_conv.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_conv.o h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_generic_converter': h5py/_conv.c:3701:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { ^ h5py/_conv.c:3767:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { ^ h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_enum_int_converter_conv': h5py/_conv.c:7177:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { ^ h5py/_conv.c:7240:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_8 = 0; __pyx_t_8 < __pyx_t_7; __pyx_t_8+=1) { ^ h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_vlen2ndarray': h5py/_conv.c:7934:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { ^ h5py/_conv.c:8000:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { ^ h5py/_conv.c: In function '__pyx_f_4h5py_5_conv_ndarray2vlen': h5py/_conv.c:8551:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { ^ h5py/_conv.c:8776:41: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { ^ h5py/_conv.c:8842:39: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/_conv.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_conv.cpython-39.so building 'h5py.h5t' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5t.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5t.o h5py/h5t.c: In function '__pyx_f_4h5py_3h5t__c_compound': h5py/h5t.c:19150:20: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] if (((__pyx_t_12 > __pyx_t_9) != 0)) { ^ h5py/h5t.c:19170:40: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] __pyx_t_11 = ((__pyx_v_member_offset > __pyx_cur_scope->__pyx_v_dt->elsize) != 0); ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5t.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5t.cpython-39.so building 'h5py.h5s' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5s.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5s.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5s.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5s.cpython-39.so building 'h5py.h5p' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5p.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5p.o h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_22set_filter': h5py/h5p.c:9899:37: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_1 = 0; __pyx_t_1 < __pyx_t_8; __pyx_t_1+=1) { ^ h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_28get_filter': h5py/h5p.c:10275:33: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) { ^ h5py/h5p.c: In function '__pyx_pf_4h5py_3h5p_8PropDCID_32get_filter_by_id': h5py/h5p.c:10715:35: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { ^ cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5p.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5p.cpython-39.so building 'h5py.h5d' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5d.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5d.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5d.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5d.cpython-39.so building 'h5py.h5a' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5a.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5a.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5a.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5a.cpython-39.so building 'h5py.h5f' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5f.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5f.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5f.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5f.cpython-39.so building 'h5py.h5g' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5g.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5g.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5g.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5g.cpython-39.so building 'h5py.h5l' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5l.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5l.o h5py/h5l.c: In function '__pyx_pf_4h5py_3h5l_9LinkProxy_12get_val': h5py/h5l.c:4718:107: warning: passing argument 4 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(__pyx_t_1 == ((herr_t)((herr_t)-1L)))) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~~ h5py/h5l.c:4718:107: note: expected 'const char **' but argument is of type 'char **' h5py/h5l.c:4718:133: warning: passing argument 5 of '__pyx_f_4h5py_4defs_H5Lunpack_elink_val' from incompatible pointer type [-Wincompatible-pointer-types] __pyx_t_1 = __pyx_f_4h5py_4defs_H5Lunpack_elink_val(__pyx_v_buf, __pyx_v_buf_size, (&__pyx_v_wtf), (&__pyx_v_ext_file_name), (&__pyx_v_ext_obj_name)); if (unlikely(__pyx_t_1 == ((herr_t)((herr_t)-1L)))) __PYX_ERR(1, 187, __pyx_L5_error) ~^~~~~~~~~~~~~~~~~~~~~~ h5py/h5l.c:4718:133: note: expected 'const char **' but argument is of type 'char **' cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5l.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5l.cpython-39.so building 'h5py.h5o' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5o.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5o.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5o.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5o.cpython-39.so building 'h5py.h5ds' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5ds.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5ds.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5ds.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5ds.cpython-39.so building 'h5py.h5ac' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5ac.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5ac.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5ac.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5ac.cpython-39.so building 'h5py.h5pl' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -DH5_USE_18_API -DNPY_NO_DEPRECATED_API=0 -I./h5py -I/usr/local/include -I/construction/science/py-h5py/h5py-3.8.0/lzf -I/construction/science/py-h5py/h5py-3.8.0/lzf/lzf -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c /construction/science/py-h5py/h5py-3.8.0/h5py/h5pl.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5pl.o cc -shared -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.dragonfly-6.5-x86_64-cpython-39/construction/science/py-h5py/h5py-3.8.0/h5py/h5pl.o -L/usr/local/lib -L/usr/local/lib -Wl,--enable-new-dtags,-R/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5pl.cpython-39.so SUCCEEDED 00:04:56 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-h5py-3.8.0_1 depends on package: py39-numpy>=1.14.5,1 - found ===> py39-h5py-3.8.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-h5py-3.8.0_1 ===> py39-h5py-3.8.0_1 depends on package: py39-numpy>=1.14.5,1 - found ===> py39-h5py-3.8.0_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-h5py-3.8.0_1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list /usr/local/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:104: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*. warnings.warn(msg, _BetaConfiguration) running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running build_ext Loading library to get build settings and version: /usr/local/lib/libhdf5.so ******************************************************************************** Summary of the h5py configuration HDF5 include dirs: [ '/usr/local/include' ] HDF5 library dirs: [ '/usr/local/lib' ] HDF5 Version: (1, 12, 2) MPI Enabled: False ROS3 VFD Enabled: False DIRECT VFD Enabled: False Rebuild Required: False MS-MPI Enabled: False MS-MPI include dirs: [] MS-MPI library dirs: [] ******************************************************************************** Executing cythonize() running install_lib creating /construction/science/py-h5py/stage/usr/local/lib/python3.9 creating /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages creating /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_errors.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5r.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/utils.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5o.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/defs.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5d.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_objects.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5s.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5p.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5a.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5ac.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5pl.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_conv.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5t.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5g.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5i.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5l.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_proxy.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_selector.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5f.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5fd.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5ds.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5z.cpython-39.so -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/h5py_warnings.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/ipy_completer.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/version.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py creating /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/base.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/compat.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/dims.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/files.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/filters.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/group.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/selections2.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/_hl/vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl creating /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/common.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/conftest.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_attribute_create.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_attrs.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_attrs_data.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_base.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_big_endian_file.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_completions.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_dataset.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_dataset_getitem.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_dataset_swmr.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_datatype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_dimension_scales.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_dims_dimensionproxy.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_dtype.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_errors.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_file.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_file2.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_file_alignment.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_file_image.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_filters.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_group.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_h5.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_h5d_direct_chunk.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_h5f.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_h5o.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_h5p.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_h5pl.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_h5t.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_objects.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_ros3.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_selections.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_slicing.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests creating /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/data_files copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/data_files copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files/vlen_string_dset.h5 -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/data_files copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files/vlen_string_dset_utc.h5 -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/data_files copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/data_files/vlen_string_s390x.h5 -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/data_files creating /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds/__init__.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds/test_highlevel_vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds/test_lowlevel_vds.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds copying build/lib.dragonfly-6.5-x86_64-cpython-39/h5py/tests/test_vds/test_virtual_source.py -> /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/h5py_warnings.py to h5py_warnings.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/ipy_completer.py to ipy_completer.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/version.py to version.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/attrs.py to attrs.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/base.py to base.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/compat.py to compat.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/dataset.py to dataset.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/datatype.py to datatype.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/dims.py to dims.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/files.py to files.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/filters.py to filters.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/group.py to group.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/selections.py to selections.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/selections2.py to selections2.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/_hl/vds.py to vds.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/common.py to common.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/conftest.py to conftest.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_attribute_create.py to test_attribute_create.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_attrs.py to test_attrs.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_attrs_data.py to test_attrs_data.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_base.py to test_base.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_big_endian_file.py to test_big_endian_file.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_completions.py to test_completions.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_dataset.py to test_dataset.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_dataset_getitem.py to test_dataset_getitem.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_dataset_swmr.py to test_dataset_swmr.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_datatype.py to test_datatype.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_dimension_scales.py to test_dimension_scales.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_dims_dimensionproxy.py to test_dims_dimensionproxy.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_dtype.py to test_dtype.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_errors.py to test_errors.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_file.py to test_file.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_file2.py to test_file2.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_file_alignment.py to test_file_alignment.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_file_image.py to test_file_image.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_filters.py to test_filters.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_group.py to test_group.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_h5.py to test_h5.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_h5d_direct_chunk.py to test_h5d_direct_chunk.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_h5f.py to test_h5f.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_h5o.py to test_h5o.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_h5p.py to test_h5p.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_h5pl.py to test_h5pl.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_h5t.py to test_h5t.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_objects.py to test_objects.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_ros3.py to test_ros3.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_selections.py to test_selections.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_slicing.py to test_slicing.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/data_files/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds/test_highlevel_vds.py to test_highlevel_vds.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds/test_lowlevel_vds.py to test_lowlevel_vds.cpython-39.pyc byte-compiling /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py/tests/test_vds/test_virtual_source.py to test_virtual_source.cpython-39.pyc writing byte-compilation script '/tmp/tmp59yz4cet.py' /usr/local/bin/python3.9 /tmp/tmp59yz4cet.py removing /tmp/tmp59yz4cet.py running install_egg_info running egg_info writing h5py.egg-info/PKG-INFO writing dependency_links to h5py.egg-info/dependency_links.txt writing requirements to h5py.egg-info/requires.txt writing top-level names to h5py.egg-info/top_level.txt reading manifest file 'h5py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'AUTHORS' no previously-included directories found matching 'docs/_build' no previously-included directories found matching 'docs_api/_build' warning: no previously-included files matching '.DS_Store' found under directory '*' warning: no previously-included files found matching 'ci' warning: no previously-included files found matching 'other' warning: no previously-included files found matching '.github' warning: no previously-included files matching '*' found under directory 'ci' warning: no previously-included files matching '*' found under directory 'other' warning: no previously-included files matching '*' found under directory '.github' warning: no previously-included files found matching '*.yml' warning: no previously-included files found matching '*.yaml' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' warning: no previously-included files found matching '.coveragerc' warning: no previously-included files found matching '.coverage_dir' warning: no previously-included files matching '*' found under directory '.coverage_dir' warning: no previously-included files found matching '.mailmap' warning: no previously-included files found matching 'github_deploy_key_h5py_h5py.enc' warning: no previously-included files found matching 'rever.xsh' no previously-included directories found matching 'news' adding license file 'LICENSE' writing manifest file 'h5py.egg-info/SOURCES.txt' Copying h5py.egg-info to /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages/h5py-3.8.0-py3.9.egg-info running install_scripts writing list of installed files to '/construction/science/py-h5py/.PLIST.pymodtmp' /usr/bin/find /construction/science/py-h5py/stage/usr/local/lib/python3.9/site-packages -name '*.so' -exec /usr/bin/strip {} + install -m 0644 /construction/science/py-h5py/h5py-3.8.0/README.rst /construction/science/py-h5py/stage/usr/local/share/doc/py39-h5py cd /construction/science/py-h5py/h5py-3.8.0/docs/ && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/science/py-h5py/stage/usr/local/share/doc/py39-h5py install -m 0644 /construction/science/py-h5py/h5py-3.8.0/examples/*.py /construction/science/py-h5py/stage/usr/local/share/examples/py39-h5py ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.9/site-packages/h5py/_conv.cpython-39.so is linked to /usr/local/lib/../lib/libsz.so.2 from science/libaec but it is not declared as a dependency Error: /usr/local/lib/python3.9/site-packages/h5py/_conv.cpython-39.so is linked to /usr/local/lib/libaec.so.0 from science/libaec but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libaec.so:science/libaec Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:08 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-h5py-3.8.0_1 file sizes/checksums [263]: 0% file sizes/checksums [263]: 38% file sizes/checksums [263]: 76% file sizes/checksums [263]: 100% Service unavailablepacking files [263]: 0% packing files [263]: 38% packing files [263]: 76% packing files [263]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:05:19