------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/science/pcmsolver XDG_CONFIG_HOME=/construction/science/pcmsolver XDG_CACHE_HOME=/construction/science/pcmsolver/.cache HOME=/construction/science/pcmsolver TMPDIR="/tmp" PATH=/construction/science/pcmsolver/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/pcmsolver/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/construction/science/pcmsolver XDG_CONFIG_HOME=/construction/science/pcmsolver XDG_CACHE_HOME=/construction/science/pcmsolver/.cache HOME=/construction/science/pcmsolver TMPDIR="/tmp" PATH=/construction/science/pcmsolver/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/pcmsolver/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/pcmsolver/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pcmsolver" EXAMPLESDIR="share/examples/pcmsolver" DATADIR="share/pcmsolver" WWWDIR="www/pcmsolver" ETCDIR="etc/pcmsolver" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pcmsolver DOCSDIR=/usr/local/share/doc/pcmsolver EXAMPLESDIR=/usr/local/share/examples/pcmsolver WWWDIR=/usr/local/www/pcmsolver ETCDIR=/usr/local/etc/pcmsolver SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:31 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> pcmsolver-1.3.0_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> pcmsolver-1.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by pcmsolver-1.3.0_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> pcmsolver-1.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by pcmsolver-1.3.0_1 for building => SHA256 Checksum OK for PCMSolver-pcmsolver-v1.3.0_GH0.tar.gz. SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> pcmsolver-1.3.0_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by pcmsolver-1.3.0_1 for building ===> Extracting for pcmsolver-1.3.0_1 => SHA256 Checksum OK for PCMSolver-pcmsolver-v1.3.0_GH0.tar.gz. Extracted Memory Use: 110.61M SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for pcmsolver-1.3.0_1 ===> Applying ports patches for pcmsolver-1.3.0_1 from /xports/science/pcmsolver/files SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/cmake - found ===> pcmsolver-1.3.0_1 depends on executable: gfortran12 - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/python3.9 - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/as - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/cmake - found ===> pcmsolver-1.3.0_1 depends on executable: gfortran12 - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/python3.9 - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/as - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/ccache - found ===> Configuring for pcmsolver-1.3.0_1 -- The CXX compiler identification is GNU 8.3.0 -- The C compiler identification is GNU 8.3.0 -- The Fortran compiler identification is GNU 12.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/bin/gfortran12 - skipped -- FCFLAGS is set to '-Wl,-rpath=/usr/local/lib/gcc12'. -- Detecting Fortran/C Interface -- Detecting Fortran/C Interface - Found GLOBAL and MODULE mangling -- Verifying Fortran/CXX Compiler Compatibility -- Verifying Fortran/CXX Compiler Compatibility - Success -- Setting (unspecified) option ENABLE_GPERFTOOLS: OFF -- Found PythonInterp: /usr/local/bin/python3.9 (found version "3.9.17") -- Setting (unspecified) option PYMOD_INSTALL_LIBDIR: python -- Could NOT find Boost (missing: Boost_INCLUDE_DIR) (Required is at least version "1.54.0") -- No libraries required, installing headers -- Eigen 3.3.2 is located here: /construction/science/pcmsolver/pcmsolver-1.3.0/external/eigen3/include/eigen3 -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_VISIBILITY - Success -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY -- Performing Test COMPILER_HAS_HIDDEN_INLINE_VISIBILITY - Success -- Performing Test COMPILER_HAS_DEPRECATED_ATTR -- Performing Test COMPILER_HAS_DEPRECATED_ATTR - Success -- Configuring done (17.7s) -- Generating done (0.1s) -- Build files have been written to: /construction/science/pcmsolver/.build SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for pcmsolver-1.3.0_1 [ 2%] Generating version info [ 2%] Built target generate-config-hpp [ 4%] Unpacking Boost Blindly (no git) accepting release version: 1.3.0+zzzzzz (recorded) 1.3.0 {} zzzzzz 1.3.0.0 release 1.3.0 <-- 1.3.0+zzzzzz [ 4%] Built target update_version [ 6%] Generating user-config.jam [ 8%] Installing Boost headers [ 10%] Clean-up Boost [ 10%] Built target custom_boost [ 20%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_precision.f90.o [ 18%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/metal/metal_sphere.F90.o [ 16%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Collocation.cpp.o [ 16%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/IBoundaryIntegralOperator.cpp.o [ 16%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Numerical.cpp.o [ 22%] Building CXX object src/CMakeFiles/pcm-objlib.dir/bi_operators/Purisima.cpp.o [ 24%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/Element.cpp.o [ 26%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/GePolCavity.cpp.o [ 30%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/UniformDielectric.cpp.o [ 30%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/SphericalDiffuse.cpp.o [ 32%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/RestartCavity.cpp.o [ 34%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/AnisotropicLiquid.cpp.o [ 36%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/Vacuum.cpp.o [ 38%] Building CXX object src/CMakeFiles/pcm-objlib.dir/cavity/ICavity.cpp.o [ 40%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/IonicLiquid.cpp.o [ 42%] Building CXX object src/CMakeFiles/pcm-objlib.dir/green/SphericalSharp.cpp.o [ 44%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Input.cpp.o [ 46%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Meddle.cpp.o [ 48%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/PhysicalConstants.cpp.o [ 50%] Building CXX object src/CMakeFiles/pcm-objlib.dir/mmfq/FQOhno.cpp.o [ 52%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/CPCMSolver.cpp.o [ 54%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/IEFSolver.cpp.o [ 56%] Building CXX object src/CMakeFiles/pcm-objlib.dir/solver/SolverImpl.cpp.o [ 58%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Atom.cpp.o [ 60%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/ChargeDistribution.cpp.o [ 62%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Molecule.cpp.o [ 64%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/QuadratureRules.cpp.o [ 66%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Solvent.cpp.o [ 68%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/Sphere.cpp.o [ 70%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/cnpy.cpp.o [ 72%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/Getkw.cpp.o [ 74%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/GetkwError.cpp.o [ 76%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/Section.cpp.o [ 78%] Building CXX object src/CMakeFiles/pcm-objlib.dir/utils/getkw/messages.cpp.o [ 80%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dblas.f90.o [ 82%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_print.f90.o [ 84%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_symmetry.f90.o [ 86%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_dlapack.f90.o [ 88%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_utils.f90.o [ 90%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_cavity.F90.o In file included from /construction/science/pcmsolver/pcmsolver-1.3.0/src/utils/getkw/Section.cpp:12: /construction/science/pcmsolver/pcmsolver-1.3.0/src/utils/getkw/Section.cpp: In destructor 'virtual Section::~Section()': /construction/science/pcmsolver/pcmsolver-1.3.0/src/utils/getkw/GetkwError.h:27:26: warning: throw will always call terminate() [-Wterminate] throw GetkwError(_err); \ ^ /construction/science/pcmsolver/pcmsolver-1.3.0/src/utils/getkw/Section.cpp:110:5: note: in expansion of macro 'THROW_GETKW' THROW_GETKW("Error! Unknown key type!"); ^~~~~~~~~~~ /construction/science/pcmsolver/pcmsolver-1.3.0/src/utils/getkw/GetkwError.h:27:26: note: in C++11 destructors default to noexcept throw GetkwError(_err); \ ^ /construction/science/pcmsolver/pcmsolver-1.3.0/src/utils/getkw/Section.cpp:110:5: note: in expansion of macro 'THROW_GETKW' THROW_GETKW("Error! Unknown key type!"); ^~~~~~~~~~~ [ 92%] Building Fortran object src/CMakeFiles/pcm-objlib.dir/pedra/pedra_cavity_interface.F90.o [ 92%] Built target pcm-objlib [ 94%] Linking CXX static library ../lib/libpcm.a [ 96%] Linking CXX shared library ../lib/libpcm.so [ 96%] Built target pcm-static [ 96%] Built target pcm-shared [ 98%] Building CXX object src/bin/CMakeFiles/run_pcm.dir/run_pcm.cpp.o [100%] Linking CXX executable ../../bin/run_pcm [100%] Built target run_pcm SUCCEEDED 00:02:20 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> pcmsolver-1.3.0_1 depends on executable: gfortran12 - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for pcmsolver-1.3.0_1 ===> pcmsolver-1.3.0_1 depends on executable: gfortran12 - found ===> pcmsolver-1.3.0_1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list [ 2%] Generating version info Blindly (no git) accepting release version: 1.3.0+zzzzzz (recorded) 1.3.0 {} zzzzzz 1.3.0.0 release 1.3.0 <-- 1.3.0+zzzzzz [ 2%] Built target update_version [ 2%] Built target generate-config-hpp [ 10%] Built target custom_boost [ 12%] Building CXX object src/CMakeFiles/pcm-objlib.dir/interface/Meddle.cpp.o [ 92%] Built target pcm-objlib [ 94%] Linking CXX shared library ../lib/libpcm.so [ 94%] Built target pcm-shared [ 96%] Linking CXX static library ../lib/libpcm.a [ 96%] Built target pcm-static [ 98%] Linking CXX executable ../../bin/run_pcm [100%] Built target run_pcm Installing the project stripped... -- Install configuration: "Release" -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/metadata.py -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/VersionInfo.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/CMakeLists.txt -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/README -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/ctaylor.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/ctaylor_math.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/example.cpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/micromath.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/polymul.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/taylor.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/taylor_math.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/tmath.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/external/libtaylor/unittest_taylor.cpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/Citation.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/Config.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/ErrorHandling.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/LoggerInterface.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/PhysicalConstants.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/STLUtils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/TimerInterface.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/bin/go_pcm.py -- Installing: /construction/science/pcmsolver/stage/usr/local/bin/plot_cavity.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/__init__.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/getkw.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/pcmdata.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/pcmparser.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/pyparsing.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/external/__init__.py -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/python/pcmsolver/external/docopt.py -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/pcmsolver.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/PCMInput.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/pcmsolver.f90 -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/libpcm.so.1 -- Set runtime path of "/construction/science/pcmsolver/stage/usr/local/lib/libpcm.so.1" to "" -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/libpcm.so -- Installing: /construction/science/pcmsolver/stage/usr/local/lib/libpcm.a -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/PCMSolverExport.h -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverConfig.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverConfigVersion.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-shared.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-shared-release.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-static.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/share/cmake/PCMSolver/PCMSolverTargets-static-release.cmake -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/BIOperatorData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/BoundaryIntegralOperator.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/Collocation.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/IBoundaryIntegralOperator.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/Numerical.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/bi_operators/Purisima.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/Cavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/CavityData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/Element.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/GePolCavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/ICavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/cavity/RestartCavity.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/AnisotropicLiquid.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/DerivativeTypes.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/Green.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/GreenData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/GreenUtils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/GreensFunction.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/IGreensFunction.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/InterfacesImpl.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/IonicLiquid.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/SphericalDiffuse.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/SphericalSharp.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/UniformDielectric.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/green/Vacuum.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/interface/Input.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/interface/Meddle.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/mmfq/FQOhno.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/CPCMSolver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/IEFSolver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/ISolver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/Solver.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/SolverData.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/solver/SolverImpl.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Atom.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/ChargeDistribution.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Factory.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Legendre.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Logger.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/LoggerImpl.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/MathUtils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/MMFQ.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Molecule.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/QuadratureRules.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Solvent.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Sphere.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/SplineFunction.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Stencils.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Symmetry.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/Timer.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/cnpy.hpp -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/Getkw.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/Section.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/Keyword.h -- Installing: /construction/science/pcmsolver/stage/usr/local/include/PCMSolver/utils/getkw/GetkwError.h -- Installing: /construction/science/pcmsolver/stage/usr/local/bin/run_pcm -- Set runtime path of "/construction/science/pcmsolver/stage/usr/local/bin/run_pcm" to "$ORIGIN/../lib" ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for pcmsolver-1.3.0_1 file sizes/checksums [98]: 0% file sizes/checksums [98]: 100% Service unavailablepacking files [98]: 0% packing files [98]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:03:29