------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11" MAKE=gmake XDG_DATA_HOME=/construction/science/meep XDG_CONFIG_HOME=/construction/science/meep XDG_CACHE_HOME=/construction/science/meep/.cache HOME=/construction/science/meep TMPDIR="/tmp" PATH=/construction/science/meep/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/meep/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.71 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- --without-scheme --without-python --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- F77="gfortran11" FC="gfortran11" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc11" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc11" XDG_DATA_HOME=/construction/science/meep XDG_CONFIG_HOME=/construction/science/meep XDG_CACHE_HOME=/construction/science/meep/.cache HOME=/construction/science/meep TMPDIR="/tmp" PATH=/construction/science/meep/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/meep/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DEFAULT_AUTOCONF=2.71 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/meep/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/meep" EXAMPLESDIR="share/examples/meep" DATADIR="share/meep" WWWDIR="www/meep" ETCDIR="etc/meep" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/meep DOCSDIR=/usr/local/share/doc/meep EXAMPLESDIR=/usr/local/share/examples/meep WWWDIR=/usr/local/www/meep ETCDIR=/usr/local/etc/meep SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600500 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=16 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/libltdl-2.4.7.pkg Installing /packages/All/libunistring-1.0.pkg Installing /packages/All/libffi-3.4.2.pkg Installing /packages/All/boehm-gc-8.2.2.pkg Installing /packages/All/boehm-gc-threaded-8.2.2.pkg Installing /packages/All/ncurses-6.3.pkg ===== Message from ncurses-6.3: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.1.2.pkg Installing /packages/All/gettext-runtime-0.21.pkg Installing /packages/All/guile2-2.2.7_2.pkg Installing /packages/All/mpfr-4.1.0_1.pkg Installing /packages/All/mpc-1.2.1.pkg Installing /packages/All/binutils-2.37_4,1.pkg Installing /packages/All/gcc11-11.3.0_1.pkg ===== Message from gcc11-11.3.0_1: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc11 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.10.1.pkg Installing /packages/All/lapack-3.10.1.pkg Installing /packages/All/harminv-1.3.1_19.pkg Installing /packages/All/gmake-4.3_2.pkg Installing /packages/All/autoconf-switch-20220527.pkg Installing /packages/All/m4-1.4.19,1.pkg Installing /packages/All/perl5-5.32.1_3.pkg Installing /packages/All/autoconf-2.71.pkg Installing /packages/All/automake-1.16.5.pkg Installing /packages/All/libtool-2.4.7.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc11 create symlink for gcc11 (world) create symlink for g++11 create symlink for g++11 (world) create symlink for cpp11 create symlink for cpp11 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/suitesparse-config-5.13.0.pkg Installing /packages/All/suitesparse-amd-2.4.6.pkg Installing /packages/All/suitesparse-camd-2.4.6.pkg Installing /packages/All/suitesparse-colamd-2.9.6.pkg Installing /packages/All/suitesparse-ccolamd-2.9.6.pkg Installing /packages/All/openblas-0.3.20,1.pkg Installing /packages/All/suitesparse-cholmod-3.0.14.pkg Installing /packages/All/suitesparse-umfpack-5.7.9.pkg Installing /packages/All/expat-2.4.9.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/openssl-1.1.1q,1.pkg Installing /packages/All/python39-3.9.16.pkg ===== Message from python39-3.9.16: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0.pkg Installing /packages/All/py39-numpy-1.23.3,1.pkg Installing /packages/All/nlopt-2.7.1.pkg Installing /packages/All/libctl-4.5.0.pkg Installing /packages/All/fftw3-3.3.10_2.pkg Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/hdf5-1.12.2,1.pkg SUCCEEDED 00:00:27 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by meep-1.24.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by meep-1.24.0 for building => SHA256 Checksum OK for NanoComp-meep-v1.24.0_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by meep-1.24.0 for building ===> Extracting for meep-1.24.0 => SHA256 Checksum OK for NanoComp-meep-v1.24.0_GH0.tar.gz. Extracted Memory Use: 65.26M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for meep-1.24.0 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on file: /usr/local/lib/libharminv.a - found ===> meep-1.24.0 depends on executable: gfortran11 - found ===> meep-1.24.0 depends on package: gmake>=4.3 - found ===> meep-1.24.0 depends on file: /usr/local/bin/as - found ===> meep-1.24.0 depends on package: autoconf>=2.71 - found ===> meep-1.24.0 depends on package: automake>=1.16.5 - found ===> meep-1.24.0 depends on executable: libtoolize - found ===> meep-1.24.0 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> meep-1.24.0 depends on shared library: libctlgeom.so - found (/usr/local/lib/libctlgeom.so) ===> meep-1.24.0 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> meep-1.24.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> meep-1.24.0 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> meep-1.24.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on file: /usr/local/lib/libharminv.a - found ===> meep-1.24.0 depends on executable: gfortran11 - found ===> meep-1.24.0 depends on package: gmake>=4.3 - found ===> meep-1.24.0 depends on file: /usr/local/bin/as - found ===> meep-1.24.0 depends on package: autoconf>=2.71 - found ===> meep-1.24.0 depends on package: automake>=1.16.5 - found ===> meep-1.24.0 depends on executable: libtoolize - found ===> meep-1.24.0 depends on file: /usr/local/bin/ccache - found ===> meep-1.24.0 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> meep-1.24.0 depends on shared library: libctlgeom.so - found (/usr/local/lib/libctlgeom.so) ===> meep-1.24.0 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> meep-1.24.0 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> meep-1.24.0 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> meep-1.24.0 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Configuring for meep-1.24.0 libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:74: warning: The macro `AC_TRY_COMPILE' is obsolete. configure.ac:74: You should run autoupdate. ./lib/autoconf/general.m4:2847: AC_TRY_COMPILE is expanded from... m4/ax_mpi.m4:69: AX_MPI is expanded from... configure.ac:74: the top level configure.ac:64: installing './compile' configure.ac:109: installing './config.guess' configure.ac:109: installing './config.sub' configure.ac:12: installing './install-sh' configure.ac:12: installing './missing' libpympb/Makefile.am: installing './depcomp' python/Makefile.am:234: installing './py-compile' parallel-tests: installing './test-driver' configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether gmake sets $(MAKE)... yes checking whether gmake supports nested variables... yes checking whether gmake supports nested variables... (cached) yes checking whether to enable maintainer-specific portions of Makefiles... no checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether cc accepts -g... yes checking for cc option to enable C11 features... none needed checking whether cc understands -c and -o together... yes checking whether gmake supports the include directive... yes (GNU style) checking dependency style of cc... gcc3 checking whether the compiler supports GNU C++... yes checking whether c++ accepts -g... yes checking for c++ option to enable C++11 features... none needed checking dependency style of c++... gcc3 checking whether c++ supports C++11 features by default... yes checking build system type... x86_64-portbld-dragonfly6.5 checking host system type... x86_64-portbld-dragonfly6.5 checking for C++ compiler vendor... gnu checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm checking the name lister (/usr/local/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly6.5 file names to x86_64-portbld-dragonfly6.5 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly6.5 file names to toolchain format... func_convert_file_noop checking for /usr/local/bin/ld option to reload object files... -r checking for file... file checking for objdump... /usr/local/bin/objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... /usr/local/bin/ranlib checking command to parse /usr/local/bin/nm output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking for stdio.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for strings.h... (cached) yes checking for sys/stat.h... (cached) yes checking for sys/types.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/local/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly6.5 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... c++ -E checking for ld used by c++... /usr/local/bin/ld checking if the linker (/usr/local/bin/ld) is GNU ld... yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking for c++ option to produce PIC... -fPIC -DPIC checking if c++ PIC flag -fPIC -DPIC works... yes checking if c++ static flag -static works... yes checking if c++ supports -c -o file.o... yes checking if c++ supports -c -o file.o... (cached) yes checking whether the c++ linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly6.5 ld.so checking how to hardcode library paths into programs... immediate checking for sin in -lm... yes checking for fftw_plan_dft_1d in -lfftw3... yes checking whether the compiler supports GNU Fortran 77... yes checking whether gfortran11 accepts -g... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gfortran11 option to produce PIC... -fPIC checking if gfortran11 PIC flag -fPIC works... yes checking if gfortran11 static flag -static works... yes checking if gfortran11 supports -c -o file.o... yes checking if gfortran11 supports -c -o file.o... (cached) yes checking whether the gfortran11 linker (/usr/local/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... dragonfly6.5 ld.so checking how to hardcode library paths into programs... immediate checking how to get verbose linking output from gfortran11... -v checking for Fortran 77 libraries of gfortran11... -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0 -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../../../../x86_64-portbld-dragonfly6.5/lib -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../.. -lfftw3 -lgfortran -lm -lquadmath checking for dummy main to link with Fortran 77 libraries... none checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore checking if sgemm_ is being linked in already... no checking for sgemm_ in -lopenblas... yes checking for cheev_... yes checking for pkg-config... no *** The pkg-config script could not be found. Make sure it is *** in your path, or set the PKG_CONFIG environment variable *** to the full path to pkg-config. *** Or see http://www.freedesktop.org/software/pkgconfig to get pkg-config. checking for harminv_get_freq_error in -lharminv... yes checking for mpb.h... no checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... no checking for gsl_sf_bessel_Jn in -lgsl... no configure: WARNING: Missing GNU GSL library...Bessel-function field initialization will not be supported. checking for deflate in -lz... (cached) yes checking for H5Pcreate in -lhdf5... yes checking for H5Pcreate... yes checking for hdf5.h... yes checking for H5Pset_mpi... no checking for H5Pset_fapl_mpio... no checking for vector3_dot in -lctlgeom... yes checking for libGDSII.h... no checking for feenableexcept... yes checking whether feenableexcept declaration is usable... yes checking whether to catch and ignore SIGFPE signals... no checking for sys/time.h... (cached) yes checking for immintrin.h... yes checking for BSDgettimeofday... no checking for gettimeofday... (cached) yes checking for cblas_ddot... yes checking for cblas_daxpy... yes checking for jn... yes checking for C/C++ restrict keyword... no checking for swig... echo checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating meep-pkgconfig config.status: creating src/Makefile config.status: creating src/support/Makefile config.status: creating tests/Makefile config.status: creating src/meep/meep-config.h config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands SUCCEEDED 00:00:48 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for meep-1.24.0 gmake[1]: Entering directory '/construction/science/meep/meep-1.24.0' gmake all-recursive gmake[2]: Entering directory '/construction/science/meep/meep-1.24.0' Making all in src gmake[3]: Entering directory '/construction/science/meep/meep-1.24.0/src' make sphere_quad (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/construction/science/meep/meep-1.24.0/src' c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT sphere-quad.o -MD -MP -MF .deps/sphere-quad.Tpo -c -o sphere-quad.o sphere-quad.cpp mv -f .deps/sphere-quad.Tpo .deps/sphere-quad.Po /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -o sphere_quad sphere-quad.o -lctlgeom -lhdf5 -lz -lm -lharminv -lopenblas -lopenblas -lfftw3 -lm -L/usr/local/lib -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0 -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../../../../x86_64-portbld-dragonfly6.5/lib -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../.. -lfftw3 -lgfortran -lm -lquadmath -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0 -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../../../../x86_64-portbld-dragonfly6.5/lib -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -Wl,-rpath=/usr/local/lib/gcc11 -B/usr/local/bin -o sphere_quad sphere-quad.o 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2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT update_pols.lo -MD -MP -MF .deps/update_pols.Tpo -c update_pols.cpp -o update_pols.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT step_db.lo -MD -MP -MF .deps/step_db.Tpo -c step_db.cpp -o step_db.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT mpb.lo -MD -MP -MF .deps/mpb.Tpo -c mpb.cpp -o mpb.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT GDSIIgeom.lo -MD -MP -MF .deps/GDSIIgeom.Tpo -c GDSIIgeom.cpp -o GDSIIgeom.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT susceptibility.lo -MD -MP -MF .deps/susceptibility.Tpo -c susceptibility.cpp -o susceptibility.o >/dev/null 2>&1 mv -f .deps/near2far.Tpo .deps/near2far.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT update_eh.lo -MD -MP -MF .deps/update_eh.Tpo -c update_eh.cpp -o update_eh.o >/dev/null 2>&1 mv -f .deps/time.Tpo .deps/time.Plo mv -f .deps/update_pols.Tpo .deps/update_pols.Plo mv -f .deps/sources.Tpo .deps/sources.Plo mv -f .deps/mpb.Tpo .deps/mpb.Plo mv -f .deps/GDSIIgeom.Tpo .deps/GDSIIgeom.Plo mv -f .deps/structure_dump.Tpo .deps/structure_dump.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT structure.lo -MD -MP -MF .deps/structure.Tpo -c structure.cpp -o structure.o >/dev/null 2>&1 mv -f .deps/step_db.Tpo .deps/step_db.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT vec.lo -MD -MP -MF .deps/vec.Tpo -c vec.cpp -o vec.o >/dev/null 2>&1 mv -f .deps/update_eh.Tpo .deps/update_eh.Plo libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT step_generic.lo -MD -MP -MF .deps/step_generic.Tpo -c step_generic.cpp -o step_generic.o >/dev/null 2>&1 mv -f .deps/susceptibility.Tpo .deps/susceptibility.Plo meepgeom.cpp: In function 'std::complex meep_geom::cond_cmp(meep::component, const meep::vec&, double, meep_geom::geom_epsilon*)': meepgeom.cpp:2654:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT meepgeom.lo -MD -MP -MF .deps/meepgeom.Tpo -c meepgeom.cpp -o meepgeom.o >/dev/null 2>&1 libtool: compile: c++ -DHAVE_CONFIG_H -I. -I.. -I../src -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -MT step_generic_stride1.lo -MD -MP -MF .deps/step_generic_stride1.Tpo -c step_generic_stride1.cpp -o step_generic_stride1.o >/dev/null 2>&1 mv -f .deps/structure.Tpo .deps/structure.Plo mv -f .deps/vec.Tpo .deps/vec.Plo mv -f .deps/step_generic.Tpo .deps/step_generic.Plo mv -f .deps/meepgeom.Tpo .deps/meepgeom.Plo mv -f .deps/step_generic_stride1.Tpo .deps/step_generic_stride1.Plo /bin/sh ../libtool --tag=CXX --mode=link c++ -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -version-info 29:0:0 -Wl,-rpath=/usr/local/lib/gcc11 -L/usr/local/lib/gcc11 -B/usr/local/bin -o libmeep.la -rpath /usr/local/lib array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo fields_dump.lo fix_boundary_sources.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo material_data.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lctlgeom -lhdf5 -lz -lm -lharminv -lopenblas -lopenblas -lfftw3 -lm -L/usr/local/lib -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0 -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../../../../x86_64-portbld-dragonfly6.5/lib -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../.. -lfftw3 -lgfortran -lm -lquadmath -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0 -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../../../../x86_64-portbld-dragonfly6.5/lib -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../.. -lfftw3 -lgfortran -lm -lquadmath libtool: link: c++ -fPIC -DPIC -shared -nostdlib /usr/lib/crti.o /usr/lib/gcc80/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/fields_dump.o .libs/fix_boundary_sources.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/material_data.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/local/lib/gcc11 -L/usr/local/lib -L/usr/local/bin -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0 -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../../../../x86_64-portbld-dragonfly6.5/lib -L/usr/local/lib/gcc11/gcc/x86_64-portbld-dragonfly6.5/11.3.0/../../.. -lctlgeom -lhdf5 -lz -lharminv -lopenblas -lfftw3 -lgfortran -lquadmath -L/usr/lib/gcc80 -lstdc++ -lm -lc -lgcc -lgcc_pic /usr/lib/gcc80/crtendS.o /usr/lib/crtn.o -O2 -Wl,-rpath=/usr/local/lib/gcc11 -B/usr/local/bin -Wl,-soname -Wl,libmeep.so.29 -o .libs/libmeep.so.29.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.29" && ln -s "libmeep.so.29.0.0" "libmeep.so.29") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.29.0.0" "libmeep.so") libtool: link: (cd .libs/libmeep.lax/libsupport.a && /usr/local/bin/ar x "/construction/science/meep/meep-1.24.0/src/support/.libs/libsupport.a") libtool: link: /usr/local/bin/ar cr .libs/libmeep.a array_slice.o anisotropic_averaging.o bands.o boundaries.o bicgstab.o casimir.o cw_fields.o dft.o dft_ldos.o energy_and_flux.o fields.o fields_dump.o fix_boundary_sources.o loop_in_chunks.o h5fields.o h5file.o initialize.o integrate.o integrate2.o material_data.o monitor.o mympi.o multilevel-atom.o near2far.o output_directory.o random.o sources.o step.o step_db.o stress.o structure.o structure_dump.o susceptibility.o time.o update_eh.o mpb.o update_pols.o vec.o step_generic.o meepgeom.o GDSIIgeom.o step_generic_stride1.o .libs/libmeep.lax/libsupport.a/mt19937ar.o libtool: link: /usr/local/bin/ranlib .libs/libmeep.a libtool: link: rm -fr .libs/libmeep.lax libtool: link: ( cd ".libs" && rm -f "libmeep.la" && ln -s "../libmeep.la" "libmeep.la" ) gmake[5]: Leaving directory '/construction/science/meep/meep-1.24.0/src' gmake[4]: Leaving directory '/construction/science/meep/meep-1.24.0/src' gmake[3]: Leaving directory '/construction/science/meep/meep-1.24.0/src' Making all in tests gmake[3]: Entering directory '/construction/science/meep/meep-1.24.0/tests' gmake[3]: Nothing to be done for 'all'. gmake[3]: Leaving directory '/construction/science/meep/meep-1.24.0/tests' gmake[3]: Entering directory '/construction/science/meep/meep-1.24.0' cp -f ./meep-pkgconfig meep.pc gmake[3]: Leaving directory '/construction/science/meep/meep-1.24.0' gmake[2]: Leaving directory '/construction/science/meep/meep-1.24.0' gmake[1]: Leaving directory '/construction/science/meep/meep-1.24.0' SUCCEEDED 00:00:35 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> meep-1.24.0 depends on executable: gfortran11 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for meep-1.24.0 ===> meep-1.24.0 depends on executable: gfortran11 - found ===> Generating temporary packing list gmake[1]: Entering directory '/construction/science/meep/meep-1.24.0' if test -z 'strip'; then \ gmake INSTALL_PROGRAM="/bin/sh /construction/science/meep/meep-1.24.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/science/meep/meep-1.24.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ install; \ else \ gmake INSTALL_PROGRAM="/bin/sh /construction/science/meep/meep-1.24.0/install-sh -c -s" \ install_sh_PROGRAM="/bin/sh /construction/science/meep/meep-1.24.0/install-sh -c -s" INSTALL_STRIP_FLAG=-s \ "INSTALL_PROGRAM_ENV=STRIPPROG='strip'" install; \ fi gmake[2]: Entering directory '/construction/science/meep/meep-1.24.0' Making install in src gmake[3]: Entering directory '/construction/science/meep/meep-1.24.0/src' gmake install-recursive gmake[4]: Entering directory '/construction/science/meep/meep-1.24.0/src' Making install in support gmake[5]: Entering directory '/construction/science/meep/meep-1.24.0/src/support' gmake[6]: Entering directory '/construction/science/meep/meep-1.24.0/src/support' gmake[6]: Nothing to be done for 'install-exec-am'. gmake[6]: Nothing to be done for 'install-data-am'. gmake[6]: Leaving directory '/construction/science/meep/meep-1.24.0/src/support' gmake[5]: Leaving directory '/construction/science/meep/meep-1.24.0/src/support' gmake[5]: Entering directory '/construction/science/meep/meep-1.24.0/src' gmake[6]: Entering directory '/construction/science/meep/meep-1.24.0/src' /bin/mkdir -p '/construction/science/meep/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c -s libmeep.la '/construction/science/meep/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libmeep.so.29.0.0 /construction/science/meep/stage/usr/local/lib/libmeep.so.29.0.0 libtool: install: strip --strip-unneeded /construction/science/meep/stage/usr/local/lib/libmeep.so.29.0.0 libtool: install: (cd /construction/science/meep/stage/usr/local/lib && { ln -s -f libmeep.so.29.0.0 libmeep.so.29 || { rm -f libmeep.so.29 && ln -s libmeep.so.29.0.0 libmeep.so.29; }; }) libtool: install: (cd /construction/science/meep/stage/usr/local/lib && { ln -s -f libmeep.so.29.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.29.0.0 libmeep.so; }; }) libtool: install: /usr/bin/install -c .libs/libmeep.lai /construction/science/meep/stage/usr/local/lib/libmeep.la libtool: install: /usr/bin/install -c .libs/libmeep.a /construction/science/meep/stage/usr/local/lib/libmeep.a libtool: install: strip --strip-debug /construction/science/meep/stage/usr/local/lib/libmeep.a libtool: install: chmod 644 /construction/science/meep/stage/usr/local/lib/libmeep.a libtool: install: /usr/local/bin/ranlib /construction/science/meep/stage/usr/local/lib/libmeep.a libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/science/meep/stage/usr/local/include' install -m 0644 meep.hpp '/construction/science/meep/stage/usr/local/include' /bin/mkdir -p '/construction/science/meep/stage/usr/local/include/meep' install -m 0644 meep/mympi.hpp meep/vec.hpp meep/meep-config.h meepgeom.hpp material_data.hpp adjust_verbosity.hpp '/construction/science/meep/stage/usr/local/include/meep' gmake[6]: Leaving directory '/construction/science/meep/meep-1.24.0/src' gmake[5]: Leaving directory '/construction/science/meep/meep-1.24.0/src' gmake[4]: Leaving directory '/construction/science/meep/meep-1.24.0/src' gmake[3]: Leaving directory '/construction/science/meep/meep-1.24.0/src' Making install in tests gmake[3]: Entering directory '/construction/science/meep/meep-1.24.0/tests' gmake[4]: Entering directory '/construction/science/meep/meep-1.24.0/tests' gmake[4]: Nothing to be done for 'install-exec-am'. gmake[4]: Nothing to be done for 'install-data-am'. gmake[4]: Leaving directory '/construction/science/meep/meep-1.24.0/tests' gmake[3]: Leaving directory '/construction/science/meep/meep-1.24.0/tests' gmake[3]: Entering directory '/construction/science/meep/meep-1.24.0' gmake[4]: Entering directory '/construction/science/meep/meep-1.24.0' gmake[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/construction/science/meep/stage/usr/local/lib/pkgconfig' install -m 0644 meep.pc '/construction/science/meep/stage/usr/local/lib/pkgconfig' gmake[4]: Leaving directory '/construction/science/meep/meep-1.24.0' gmake[3]: Leaving directory '/construction/science/meep/meep-1.24.0' gmake[2]: Leaving directory '/construction/science/meep/meep-1.24.0' gmake[1]: Leaving directory '/construction/science/meep/meep-1.24.0' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libmeep.so.29.0.0 is linked to /usr/local/lib/../lib/libsz.so.2 from science/libaec but it is not declared as a dependency Error: /usr/local/lib/libmeep.so.29.0.0 is linked to /usr/local/lib/libaec.so.0 from science/libaec but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libaec.so:science/libaec Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for meep-1.24.0 file sizes/checksums [12]: 0% file sizes/checksums [12]: 100% Service unavailablepacking files [12]: 0% packing files [12]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:01:57