------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for elmerfem-9.0_8: GUI=off: Build with ElmerGUI (Graphical User Interface) OCC=off: Use OpenCASCADE for CAD import in ElmerGUI ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12 -fPIC -fallow-argument-mismatch" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12 -fPIC -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12 -fPIC" XDG_DATA_HOME=/construction/science/elmerfem XDG_CONFIG_HOME=/construction/science/elmerfem XDG_CACHE_HOME=/construction/science/elmerfem/.cache HOME=/construction/science/elmerfem TMPDIR="/tmp" PATH=/construction/science/elmerfem/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/elmerfem/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12 -fPIC -fallow-argument-mismatch" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12 -fPIC -fallow-argument-mismatch" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12 -fPIC" XDG_DATA_HOME=/construction/science/elmerfem XDG_CONFIG_HOME=/construction/science/elmerfem XDG_CACHE_HOME=/construction/science/elmerfem/.cache HOME=/construction/science/elmerfem TMPDIR="/tmp" PATH=/construction/science/elmerfem/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/elmerfem/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fPIC" CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fPIC -isystem /usr/local/include -fPIC" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/elmerfem/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- GUI="@comment " NO_GUI="" OCC="@comment " NO_OCC="" CMAKE_BUILD_TYPE="release" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/elmerfem" EXAMPLESDIR="share/examples/elmerfem" DATADIR="share/elmerfem" WWWDIR="www/elmerfem" ETCDIR="etc/elmerfem" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- GUI="@comment " NO_GUI="" OCC="@comment " NO_OCC="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/elmerfem DOCSDIR=/usr/local/share/doc/elmerfem EXAMPLESDIR=/usr/local/share/examples/elmerfem WWWDIR=/usr/local/www/elmerfem ETCDIR=/usr/local/etc/elmerfem SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/blas-3.11.0_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libaec-1.0.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hdf5-1.12.2_2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/metis-5.1.0_9.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libnghttp2-1.53.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libssh2-1.11.0,3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libunistring-1.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libidn2-2.3.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpsl-0.21.2_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ca_root_nss-3.89.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/pkgconf-1.8.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/netcdf-4.9.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/openblas-0.3.20_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> elmerfem-9.0_8 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> elmerfem-9.0_8 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by elmerfem-9.0_8 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> elmerfem-9.0_8 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by elmerfem-9.0_8 for building => SHA256 Checksum OK for ElmerCSC-elmerfem-release-9.0_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> elmerfem-9.0_8 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by elmerfem-9.0_8 for building ===> Extracting for elmerfem-9.0_8 ===> elmerfem-9.0_8 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by elmerfem-9.0_8 for building => SHA256 Checksum OK for ElmerCSC-elmerfem-release-9.0_GH0.tar.gz. Extracted Memory Use: 260.40M SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for elmerfem-9.0_8 ===> Applying ports patches for elmerfem-9.0_8 from /xports/science/elmerfem/files /bin/cp -v /xports/science/elmerfem/pkg-plist /construction/science/elmerfem/elmerfem-release-9.0/pkg-plist /xports/science/elmerfem/pkg-plist -> /construction/science/elmerfem/elmerfem-release-9.0/pkg-plist /usr/bin/env WRKSRC=/construction/science/elmerfem/elmerfem-release-9.0 REWARNFILE=/construction/science/elmerfem/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e '/ElmerSolver_mpi/d' /construction/science/elmerfem/elmerfem-release-9.0/pkg-plist /usr/bin/env WRKSRC=/construction/science/elmerfem/elmerfem-release-9.0 REWARNFILE=/construction/science/elmerfem/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e 's@-DUSE_ARPACK@&__z@g' /construction/science/elmerfem/elmerfem-release-9.0/CMakeLists.txt /usr/bin/env WRKSRC=/construction/science/elmerfem/elmerfem-release-9.0 REWARNFILE=/construction/science/elmerfem/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e 's@binio arpack@binio@g' /construction/science/elmerfem/elmerfem-release-9.0/fem/src/CMakeLists.txt SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> elmerfem-9.0_8 depends on file: /usr/local/bin/cmake - found ===> elmerfem-9.0_8 depends on executable: gfortran12 - found ===> elmerfem-9.0_8 depends on file: /usr/local/bin/as - found ===> elmerfem-9.0_8 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> elmerfem-9.0_8 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> elmerfem-9.0_8 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> elmerfem-9.0_8 depends on shared library: libmetis.so - found (/usr/local/lib/libmetis.so) ===> elmerfem-9.0_8 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> elmerfem-9.0_8 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> elmerfem-9.0_8 depends on file: /usr/local/bin/cmake - found ===> elmerfem-9.0_8 depends on executable: gfortran12 - found ===> elmerfem-9.0_8 depends on file: /usr/local/bin/as - found ===> elmerfem-9.0_8 depends on file: /usr/local/bin/ccache - found ===> elmerfem-9.0_8 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> elmerfem-9.0_8 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> elmerfem-9.0_8 depends on shared library: libmetis.so - found (/usr/local/lib/libmetis.so) ===> elmerfem-9.0_8 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> elmerfem-9.0_8 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Configuring for elmerfem-9.0_8 ===> Performing out-of-source build /bin/mkdir -p /construction/science/elmerfem/.build -- The Fortran compiler identification is GNU 12.2.0 -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Check for working Fortran compiler: /usr/local/bin/gfortran12 - skipped -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Checking whether GFortran version >= 4.8 -- yes -- ------------------------------------------------ -- Mesh adaptation 2D/3D looking for [Mmg] tools -- Library not found: >MMG_FOUND< -- Missing: >MMG_INCLUDE_DIR< , >MMG_LIBRARY<, to compile MMG3DSolver -- ------------------------------------------------ -- Looking for Fortran sgemm -- Looking for Fortran sgemm - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for Fortran sgemm -- Looking for Fortran sgemm - found -- Found BLAS: /usr/local/lib/libopenblas.so -- Looking for Fortran cheev -- Looking for Fortran cheev - found -- Found LAPACK: /usr/local/lib/libopenblas.so;-lpthread;-lm;-ldl -- Checking whether /usr/local/bin/gfortran12 supports PROCEDURE POINTER -- Checking whether /usr/local/bin/gfortran12 supports PROCEDURE POINTER -- yes -- Checking whether /usr/local/bin/gfortran12 supports CONTIGUOUS -- Checking whether /usr/local/bin/gfortran12 supports CONTIGUOUS -- yes -- Checking whether /usr/local/bin/gfortran12 supports EXECUTE_COMMAND_LINE -- Checking whether /usr/local/bin/gfortran12 supports EXECUTE_COMMAND_LINE -- yes -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of long -- Check size of long - done -- Found 124 modules from /construction/science/elmerfem/elmerfem-release-9.0/fem/src/modules -- ELMERSOLVER_RPATH_STRING_MOD -- ELMERLIB_RPATH_STRING -- Found 676 tests -- ------------------------------------------------ -- BLAS library: /usr/local/lib/libopenblas.so -- LAPACK library: /usr/local/lib/libopenblas.so;-lpthread;-lm;-ldl -- ------------------------------------------------ -- Fortran compiler: /usr/local/bin/gfortran12 -- Fortran flags: -O -Wl,-rpath=/usr/local/lib/gcc12 -fPIC -fallow-argument-mismatch -O3 -DNDEBUG -O3 -- ------------------------------------------------ -- C compiler: /usr/local/libexec/ccache/cc -- C flags: -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fPIC -DNDEBUG -- ------------------------------------------------ -- CXX compiler: /usr/local/libexec/ccache/c++ -- CXX flags: -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fPIC -isystem /usr/local/include -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fPIC -isystem /usr/local/include -fPIC -DNDEBUG -- ------------------------------------------------ -- ------------------------------------------------ -- Package filename: elmerfem-9.0-release-9.0-20230903_DragonFly-x86_64 -- Patch version: 9.0-release-9.0 -- Configuring done (8.3s) -- Generating done (2.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /construction/science/elmerfem/.build sed: /construction/science/elmerfem/.build/ElmerGUI/Application/CMakeFiles/ElmerGUI.dir/link.txt: No such file or directory *** Error code 1 Stop. make[1]: stopped in /xports/science/elmerfem *** Error code 1 Stop. make: stopped in /xports/science/elmerfem FAILED 00:00:11