------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for bout++-4.4.2_3: OPENMP=off: Parallel processing support via OpenMP PETSC=off: Build with PETSc support SLEPC=off: Build with SLEPc support SUNDIALS=off: Build with Sundials support ====> File format support: you have to choose at least one of them HDF5=off: HDF-5 data format support NETCDF=on: NetCDF data format support ====> MPI (Message Passing Interface) support: you have to select exactly one of them MPICH=on: Parallel processing support via MPICH 3 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/science/bout++ XDG_CONFIG_HOME=/construction/science/bout++ XDG_CACHE_HOME=/construction/science/bout++/.cache HOME=/construction/science/bout++ TMPDIR="/tmp" PATH=/construction/science/bout++/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/bout++/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/science/bout++ XDG_CONFIG_HOME=/construction/science/bout++ XDG_CACHE_HOME=/construction/science/bout++/.cache HOME=/construction/science/bout++ TMPDIR="/tmp" PATH=/construction/science/bout++/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/science/bout++/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lexecinfo -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/science/bout++/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/bout++" EXAMPLESDIR="share/examples/bout++" DATADIR="share/bout++" WWWDIR="www/bout++" ETCDIR="etc/bout++" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/bout++ DOCSDIR=/usr/local/share/doc/bout++ EXAMPLESDIR=/usr/local/share/examples/bout++ WWWDIR=/usr/local/www/bout++ ETCDIR=/usr/local/etc/bout++ SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/gmake-4.3_2.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/pkgconf-1.8.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/fftw3-3.3.10_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libelf-0.8.13_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/e2fsprogs-libuuid-1.47.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libnghttp2-1.53.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libssh2-1.11.0,3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libunistring-1.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libidn2-2.3.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpsl-0.21.2_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ca_root_nss-3.89.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libaec-1.0.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hdf5-1.12.2_2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/netcdf-4.9.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/netcdf-cxx-4.3.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpciaccess-0.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/level-zero-1.12.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/hwloc2-2.8.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/json-c-0.16.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libsysinfo-0.0.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgpg-error-1.47.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libgcrypt-1.10.2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/munge-0.5.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libedit-3.1.20221030,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lua54-5.4.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/slurm-wlm-20.02.7_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'slurm' with gid '468'. ===> Creating users Creating user 'slurm' with uid '468'. ===== Message from slurm-wlm-20.02.7_3: -- ===> NOTICE: The slurm-wlm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libepoll-shim-0.0.20230411.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/bash-5.2.15.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/perl5-5.32.1_3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpich-3.4.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from mpich-3.4.3_2: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:33 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> bout++-4.4.2_3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> bout++-4.4.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by bout++-4.4.2_3 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> bout++-4.4.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by bout++-4.4.2_3 for building => SHA256 Checksum OK for boutproject-BOUT-dev-v4.4.2_GH0.tar.gz. => SHA256 Checksum OK for boutproject-boutdata-3a66e6c_GH0.tar.gz. => SHA256 Checksum OK for boutproject-boututils-a79a00a_GH0.tar.gz. => SHA256 Checksum OK for google-googletest-96f4ce0_GH0.tar.gz. => SHA256 Checksum OK for meitar-git-archive-all.sh-fc86194_GH0.tar.gz. => SHA256 Checksum OK for mpark-variant-0b488da_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> bout++-4.4.2_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by bout++-4.4.2_3 for building ===> Extracting for bout++-4.4.2_3 => SHA256 Checksum OK for boutproject-BOUT-dev-v4.4.2_GH0.tar.gz. => SHA256 Checksum OK for boutproject-boutdata-3a66e6c_GH0.tar.gz. => SHA256 Checksum OK for boutproject-boututils-a79a00a_GH0.tar.gz. => SHA256 Checksum OK for google-googletest-96f4ce0_GH0.tar.gz. => SHA256 Checksum OK for meitar-git-archive-all.sh-fc86194_GH0.tar.gz. => SHA256 Checksum OK for mpark-variant-0b488da_GH0.tar.gz. Extracted Memory Use: 50.02M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for bout++-4.4.2_3 ===> Applying ports patches for bout++-4.4.2_3 from /xports/science/bout++/files SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> bout++-4.4.2_3 depends on executable: gmake - found ===> bout++-4.4.2_3 depends on file: /usr/local/bin/cmake - found ===> bout++-4.4.2_3 depends on file: /usr/local/bin/python3.9 - found ===> bout++-4.4.2_3 depends on package: pkgconf>=1.3.0_1 - found ===> bout++-4.4.2_3 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> bout++-4.4.2_3 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> bout++-4.4.2_3 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> bout++-4.4.2_3 depends on shared library: libuuid.so - found (/usr/local/lib/libuuid.so) ===> bout++-4.4.2_3 depends on shared library: libnetcdf_c++4.so - found (/usr/local/lib/libnetcdf_c++4.so) ===> bout++-4.4.2_3 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> bout++-4.4.2_3 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> bout++-4.4.2_3 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> bout++-4.4.2_3 depends on executable: gmake - found ===> bout++-4.4.2_3 depends on file: /usr/local/bin/cmake - found ===> bout++-4.4.2_3 depends on file: /usr/local/bin/python3.9 - found ===> bout++-4.4.2_3 depends on package: pkgconf>=1.3.0_1 - found ===> bout++-4.4.2_3 depends on file: /usr/local/bin/ccache - found ===> bout++-4.4.2_3 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> bout++-4.4.2_3 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> bout++-4.4.2_3 depends on shared library: libuuid.so - found (/usr/local/lib/libuuid.so) ===> bout++-4.4.2_3 depends on shared library: libnetcdf_c++4.so - found (/usr/local/lib/libnetcdf_c++4.so) ===> bout++-4.4.2_3 depends on shared library: libnetcdf.so - found (/usr/local/lib/libnetcdf.so) ===> bout++-4.4.2_3 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> bout++-4.4.2_3 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> Configuring for bout++-4.4.2_3 ===> Performing out-of-source build /bin/mkdir -p /construction/science/bout++/.build -- The CXX compiler identification is GNU 8.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found MPI_CXX: /usr/local/lib/libmpicxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -- Found Python: /usr/local/bin/python3.9 (found version "3.9.17") found components: Interpreter -- Could NOT find ClangFormat (missing: ClangFormat_BIN) CMake Warning (dev) at CMakeLists.txt:346 (message): 'src/field/generated_fieldops.cxx' will not be regenerated when you make changes to either 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. This is because either Python or clang-format is missing (see above messages for more information) or BOUT_GENERATE_FIELDOPS is OFF (current value: ON). This warning is only important for BOUT++ developers and can otherwise be safely ignored. This warning is for project developers. Use -Wno-dev to suppress it. -- Enable coverage: OFF CMake Warning (dev) at /usr/local/share/cmake/Modules/CMakeDependentOption.cmake:89 (message): Policy CMP0127 is not set: cmake_dependent_option() supports full Condition Syntax. Run "cmake --help-policy CMP0127" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:388 (cmake_dependent_option) This warning is for project developers. Use -Wno-dev to suppress it. -- Using mpark.variant submodule -- Performing Test HAS_FLAG__Wnull_dereference -- Performing Test HAS_FLAG__Wnull_dereference - Success -- Warning flag is supported by compiler: -Wnull-dereference -- Found negative flag: -Wno-cast-function-type replaced with -Wcast-function-type -- Performing Test HAS_FLAG__Wno_cast_function_type -- Performing Test HAS_FLAG__Wno_cast_function_type - Success -- Warning flag is supported by compiler: -Wno-cast-function-type -- Runtime checking level: CHECK=2 -- Extra debug output: BOUT_USE_OUTPUT_DEBUG=OFF -- Signal handling: BOUT_USE_SIGNAL=ON -- Output coloring: BOUT_USE_COLOR=ON -- Field name tracking: BOUT_USE_TRACK=ON -- Signalling floating point exceptions: BOUT_USE_SIGFPE=OFF -- Enable backtrace: BOUT_USE_BACKTRACE=ON -- Enable OpenMP: false -- Git revision: GITDIR-NOTFOUND -- PVODE support: ON -- Found PkgConfig: /usr/local/bin/pkgconf (found version "1.8.1") -- Checking for module 'netcdf-cxx4' -- Found netcdf-cxx4, version 4.3.1 -- NetCDF support: true -- HDF5 support: false -- Found FFTW: /usr/local/lib/libfftw3.so -- FFTW support: ON -- Looking for sgemm_ -- Looking for sgemm_ - not found -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/local/lib/libopenblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- Found LAPACK: /usr/local/lib/libopenblas.so;-lpthread;-lm;-ldl -- LAPACK support: ON -- PETSc support: false -- SLEPc support: false -- SUNDIALS support: false -- Could NOT find Gettext (missing: GETTEXT_MSGMERGE_EXECUTABLE GETTEXT_MSGFMT_EXECUTABLE) -- UUID_SYSTEM_GENERATOR: ON -- Performing Test HAS_PRETTY_FUNCTION -- Performing Test HAS_PRETTY_FUNCTION - Success -------------------------------- BOUT++ Configuration Summary -------------------------------- Bundled PVODE support : ON PETSc support : false SLEPc support : false SUNDIALS support : false NetCDF support : true HDF5 support : false FFTW support : ON LAPACK support : ON OpenMP support : false Natural language support : ON ScoreP support : OFF System UUID generator : ON Extra debug output : OFF CHECK level : 2 Signal handling : ON Output coloring : ON Field name tracking : ON Floating point exceptions: OFF Backtrace enabled : ON === Python === Make sure that the tools/pylib directory is in your PYTHONPATH e.g. by adding to your ~/.bashrc file export PYTHONPATH=/construction/science/bout++/.build/tools/pylib:/construction/science/bout++/BOUT-dev-4.4.2/tools/pylib:$PYTHONPATH *** Now run `cmake --build /construction/science/bout++/.build` to compile BOUT++ *** -- Configuring done (14.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_C_FLAGS CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED Python_ADDITIONAL_VERSIONS -- Build files have been written to: /construction/science/bout++/.build SUCCEEDED 00:00:15 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for bout++-4.4.2_3 /usr/local/bin/cmake -S/construction/science/bout++/BOUT-dev-4.4.2 -B/construction/science/bout++/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/bout++/.build/CMakeFiles /construction/science/bout++/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvode.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- /usr/bin/make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/depend --- externalpackages/PVODE/CMakeFiles/pvode.dir/all --- /usr/bin/make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/depend --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvpre.dir/depend --- --- externalpackages/PVODE/CMakeFiles/pvode.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvode.dir/depend --- --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- cd /construction/science/bout++/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/bout++/BOUT-dev-4.4.2 /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE /construction/science/bout++/.build /construction/science/bout++/.build/externalpackages/PVODE /construction/science/bout++/.build/externalpackages/PVODE/CMakeFiles/pvpre.dir/DependInfo.cmake --- externalpackages/PVODE/CMakeFiles/pvode.dir/all --- cd /construction/science/bout++/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/bout++/BOUT-dev-4.4.2 /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE /construction/science/bout++/.build /construction/science/bout++/.build/externalpackages/PVODE /construction/science/bout++/.build/externalpackages/PVODE/CMakeFiles/pvode.dir/DependInfo.cmake --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- /usr/bin/make -f externalpackages/PVODE/CMakeFiles/pvpre.dir/build.make externalpackages/PVODE/CMakeFiles/pvpre.dir/build --- externalpackages/PVODE/CMakeFiles/pvode.dir/all --- /usr/bin/make -f externalpackages/PVODE/CMakeFiles/pvode.dir/build.make externalpackages/PVODE/CMakeFiles/pvode.dir/build --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o --- --- 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/usr/local/libexec/ccache/c++ -Dpvpre_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -MF CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o.d -o CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/precon/pvbbdpre.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o --- [ 2%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o --- [ 4%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o --- [ 4%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o --- [ 4%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o --- cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvode_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -MF CMakeFiles/pvode.dir/source/cvspgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/cvspgmr.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/llnlmath.cpp.o --- cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvode_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem 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externalpackages/PVODE/CMakeFiles/pvode.dir/source/spgmr.cpp.o -MF CMakeFiles/pvode.dir/source/spgmr.cpp.o.d -o CMakeFiles/pvode.dir/source/spgmr.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/spgmr.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o --- [ 6%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o --- [ 6%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o --- cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvode_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/iterativ.cpp.o -MF CMakeFiles/pvode.dir/source/iterativ.cpp.o.d -o CMakeFiles/pvode.dir/source/iterativ.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/iterativ.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o --- [ 6%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o --- cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvode_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o -MF CMakeFiles/pvode.dir/source/cvode.cpp.o.d -o CMakeFiles/pvode.dir/source/cvode.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/cvode.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o --- cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvode_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvdiag.cpp.o -MF CMakeFiles/pvode.dir/source/cvdiag.cpp.o.d -o CMakeFiles/pvode.dir/source/cvdiag.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/cvdiag.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o --- cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvode_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/nvector.cpp.o -MF CMakeFiles/pvode.dir/source/nvector.cpp.o.d -o CMakeFiles/pvode.dir/source/nvector.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/nvector.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o --- [ 7%] Building CXX object externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvode_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvode.dir/source/smalldense.cpp.o -MF CMakeFiles/pvode.dir/source/smalldense.cpp.o.d -o CMakeFiles/pvode.dir/source/smalldense.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/smalldense.cpp --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o --- [ 8%] Building CXX object externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/libexec/ccache/c++ -Dpvpre_EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -MD -MT externalpackages/PVODE/CMakeFiles/pvpre.dir/precon/band.cpp.o -MF CMakeFiles/pvpre.dir/precon/band.cpp.o.d -o CMakeFiles/pvpre.dir/precon/band.cpp.o -c /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/precon/band.cpp --- externalpackages/PVODE/CMakeFiles/pvode.dir/all --- --- externalpackages/PVODE/CMakeFiles/pvode.dir/source/cvode.cpp.o --- /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/cvode.cpp: In function 'int pvode::CVnls(pvode::CVodeMem, int)': /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/cvode.cpp:1829:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/cvode.cpp: In function 'int pvode::CVHandleFailure(pvode::CVodeMem, int)': /construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/source/cvode.cpp:2395:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ --- lib/libpvode.so.1.0.0 --- [ 9%] Linking CXX shared library ../../lib/libpvode.so cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pvode.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -Wl,-rpath=/usr/local/lib/gcc12 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc12 -lexecinfo -L/usr/local/lib -shared -Wl,-soname,libpvode.so.1.0.0 -o ../../lib/libpvode.so.1.0.0 CMakeFiles/pvode.dir/source/cvode.cpp.o CMakeFiles/pvode.dir/source/nvector.cpp.o CMakeFiles/pvode.dir/source/llnlmath.cpp.o CMakeFiles/pvode.dir/source/cvspgmr.cpp.o CMakeFiles/pvode.dir/source/spgmr.cpp.o CMakeFiles/pvode.dir/source/iterativ.cpp.o CMakeFiles/pvode.dir/source/cvdiag.cpp.o CMakeFiles/pvode.dir/source/smalldense.cpp.o /usr/local/lib/libmpicxx.so /usr/local/lib/libmpi.so cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so.1.0.0 ../../lib/libpvode.so [ 9%] Built target pvode --- externalpackages/PVODE/CMakeFiles/pvpre.dir/all --- --- lib/libpvpre.so.1.0.0 --- [ 10%] Linking CXX shared library ../../lib/libpvpre.so cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/pvpre.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -Wl,-rpath=/usr/local/lib/gcc12 -Wl,-rpath -Wl,/usr/local/lib -L/usr/local/lib/gcc12 -lexecinfo -L/usr/local/lib -shared -Wl,-soname,libpvpre.so.1.0.0 -o ../../lib/libpvpre.so.1.0.0 CMakeFiles/pvpre.dir/precon/pvbbdpre.cpp.o CMakeFiles/pvpre.dir/precon/band.cpp.o /usr/local/lib/libmpicxx.so /usr/local/lib/libmpi.so cd /construction/science/bout++/.build/externalpackages/PVODE && /usr/local/bin/cmake -E cmake_symlink_library ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so.1.0.0 ../../lib/libpvpre.so [ 11%] Built target pvpre --- CMakeFiles/bout++.dir/all --- /usr/bin/make -f CMakeFiles/bout++.dir/build.make CMakeFiles/bout++.dir/depend --- CMakeFiles/bout++.dir/depend --- cd /construction/science/bout++/.build && /usr/local/bin/cmake -E cmake_depends "Unix 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--- CMakeFiles/bout++.dir/src/field/initialprofiles.cxx.o --- --- CMakeFiles/bout++.dir/src/field/field_data.cxx.o --- [ 12%] Building CXX object CMakeFiles/bout++.dir/src/field/field_data.cxx.o --- CMakeFiles/bout++.dir/src/field/field2d.cxx.o --- [ 13%] Building CXX object CMakeFiles/bout++.dir/src/field/field2d.cxx.o --- CMakeFiles/bout++.dir/src/field/field3d.cxx.o --- [ 13%] Building CXX object CMakeFiles/bout++.dir/src/field/field3d.cxx.o --- CMakeFiles/bout++.dir/src/bout++.cxx.o --- [ 13%] Building CXX object CMakeFiles/bout++.dir/src/bout++.cxx.o --- CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o --- [ 14%] Building CXX object CMakeFiles/bout++.dir/src/field/fieldgroup.cxx.o --- CMakeFiles/bout++.dir/src/field/field_data.cxx.o --- /usr/local/libexec/ccache/c++ -DBACKTRACE -DBOUT_BACKTRACE -DBOUT_CHECK=2 -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DBOUT_VERSION_STRING=\"4.4.2\" -DBOUT_VERSION_DOUBLE=4.42 -DCHECK=2 -DBOUT_CHECK=2 -DSIGHANDLE 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CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o --- [ 44%] Building CXX object CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o /usr/local/libexec/ccache/c++ -DBACKTRACE -DBOUT_BACKTRACE -DBOUT_CHECK=2 -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DBOUT_VERSION_STRING=\"4.4.2\" -DBOUT_VERSION_DOUBLE=4.42 -DCHECK=2 -DBOUT_CHECK=2 -DSIGHANDLE -DBOUT_SIGHANDLE -DLOGCOLOR -DBOUT_LOGCOLOR -DTRACK -DBOUT_TRACK -DBACKTRACE -DBOUT_BACKTRACE -DREVISION=GITDIR-NOTFOUND -DBOUT_HAS_PVODE -DNCDF4 -DBOUT_HAS_NETCDF -DBOUT_HAS_FFTW -DLAPACK -DBOUT_HAS_LAPACK -DHAS_PRETTY_FUNCTION -DBOUT_HAS_PRETTY_FUNCTION -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG" -DBOUT_HAS_FFTW -DBOUT_HAS_LAPACK -DBOUT_HAS_NETCDF -DBOUT_HAS_PRETTY_FUNCTION -DBOUT_HAS_PVODE -DBOUT_LOGCOLOR -DBOUT_SIGHANDLE -DBOUT_TRACK -DBOUT_VERSION_DOUBLE=4.42 -DBOUT_VERSION_STRING=\"4.4.2\" -DCHECK=2 -DHAS_PRETTY_FUNCTION -DLAPACK -DLOGCOLOR -DNCDF4 -DREVISION=GITDIR-NOTFOUND -DSIGHANDLE -DTRACK -Dbout___EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/mpark.variant/include -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -MF CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o.d -o CMakeFiles/bout++.dir/src/invert/laplacexz/laplacexz.cxx.o -c /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplacexz/laplacexz.cxx --- CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o --- --- CMakeFiles/bout++.dir/src/invert/laplace/invert_laplace.cxx.o --- /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx: In constructor 'Laplacian::Laplacian(Options*, CELL_LOC, Mesh*)': /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:100:16: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] Laplacian::setFlags(flags); ^~~~~~~~ In file included from /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:36: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:100:30: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] Laplacian::setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:36: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx: In function 'int invert_laplace(const FieldPerp&, FieldPerp&, int, const Field2D*, const Field2D*, const Field2D*)': /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:770:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] lap->setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:36: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx: In function 'int invert_laplace(const Field3D&, Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:800:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] lap->setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:36: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx: In function 'const Field3D invert_laplace(const Field3D&, int, const Field2D*, const Field2D*, const Field2D*)': /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:831:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] lap->setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/src/invert/laplace/invert_laplace.cxx:36: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ --- CMakeFiles/bout++.dir/src/invert/parderiv/impls/cyclic/cyclic.cxx.o --- [ 44%] Building CXX object 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-isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_op.cxx.o -c /construction/science/bout++/BOUT-dev-4.4.2/src/mesh/parallel_boundary_op.cxx --- CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o --- [ 63%] Building CXX object CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o /usr/local/libexec/ccache/c++ -DBACKTRACE -DBOUT_BACKTRACE -DBOUT_CHECK=2 -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DBOUT_VERSION_STRING=\"4.4.2\" -DBOUT_VERSION_DOUBLE=4.42 -DCHECK=2 -DBOUT_CHECK=2 -DSIGHANDLE -DBOUT_SIGHANDLE -DLOGCOLOR -DBOUT_LOGCOLOR -DTRACK -DBOUT_TRACK -DBACKTRACE -DBOUT_BACKTRACE -DREVISION=GITDIR-NOTFOUND -DBOUT_HAS_PVODE -DNCDF4 -DBOUT_HAS_NETCDF -DBOUT_HAS_FFTW -DLAPACK -DBOUT_HAS_LAPACK -DHAS_PRETTY_FUNCTION -DBOUT_HAS_PRETTY_FUNCTION -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG" -DBOUT_HAS_FFTW -DBOUT_HAS_LAPACK -DBOUT_HAS_NETCDF -DBOUT_HAS_PRETTY_FUNCTION -DBOUT_HAS_PVODE -DBOUT_LOGCOLOR -DBOUT_SIGHANDLE -DBOUT_TRACK -DBOUT_VERSION_DOUBLE=4.42 -DBOUT_VERSION_STRING=\"4.4.2\" -DCHECK=2 -DHAS_PRETTY_FUNCTION -DLAPACK -DLOGCOLOR -DNCDF4 -DREVISION=GITDIR-NOTFOUND -DSIGHANDLE -DTRACK -Dbout___EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/mpark.variant/include -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/parallel_boundary_region.cxx.o -c /construction/science/bout++/BOUT-dev-4.4.2/src/mesh/parallel_boundary_region.cxx --- CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o --- [ 64%] Building CXX object CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o /usr/local/libexec/ccache/c++ -DBACKTRACE -DBOUT_BACKTRACE -DBOUT_CHECK=2 -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DBOUT_VERSION_STRING=\"4.4.2\" -DBOUT_VERSION_DOUBLE=4.42 -DCHECK=2 -DBOUT_CHECK=2 -DSIGHANDLE -DBOUT_SIGHANDLE -DLOGCOLOR -DBOUT_LOGCOLOR -DTRACK -DBOUT_TRACK -DBACKTRACE -DBOUT_BACKTRACE -DREVISION=GITDIR-NOTFOUND -DBOUT_HAS_PVODE -DNCDF4 -DBOUT_HAS_NETCDF -DBOUT_HAS_FFTW -DLAPACK -DBOUT_HAS_LAPACK -DHAS_PRETTY_FUNCTION -DBOUT_HAS_PRETTY_FUNCTION -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG" -DBOUT_HAS_FFTW -DBOUT_HAS_LAPACK -DBOUT_HAS_NETCDF -DBOUT_HAS_PRETTY_FUNCTION -DBOUT_HAS_PVODE -DBOUT_LOGCOLOR -DBOUT_SIGHANDLE -DBOUT_TRACK -DBOUT_VERSION_DOUBLE=4.42 -DBOUT_VERSION_STRING=\"4.4.2\" -DCHECK=2 -DHAS_PRETTY_FUNCTION -DLAPACK -DLOGCOLOR -DNCDF4 -DREVISION=GITDIR-NOTFOUND -DSIGHANDLE -DTRACK -Dbout___EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/mpark.variant/include -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -MF CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o.d -o CMakeFiles/bout++.dir/src/mesh/surfaceiter.cxx.o -c /construction/science/bout++/BOUT-dev-4.4.2/src/mesh/surfaceiter.cxx --- CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o --- [ 65%] Building CXX object CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o /usr/local/libexec/ccache/c++ -DBACKTRACE -DBOUT_BACKTRACE -DBOUT_CHECK=2 -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DBOUT_VERSION_STRING=\"4.4.2\" -DBOUT_VERSION_DOUBLE=4.42 -DCHECK=2 -DBOUT_CHECK=2 -DSIGHANDLE -DBOUT_SIGHANDLE -DLOGCOLOR -DBOUT_LOGCOLOR -DTRACK -DBOUT_TRACK -DBACKTRACE -DBOUT_BACKTRACE -DREVISION=GITDIR-NOTFOUND -DBOUT_HAS_PVODE -DNCDF4 -DBOUT_HAS_NETCDF -DBOUT_HAS_FFTW -DLAPACK -DBOUT_HAS_LAPACK -DHAS_PRETTY_FUNCTION -DBOUT_HAS_PRETTY_FUNCTION -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG" -DBOUT_HAS_FFTW -DBOUT_HAS_LAPACK -DBOUT_HAS_NETCDF -DBOUT_HAS_PRETTY_FUNCTION -DBOUT_HAS_PVODE -DBOUT_LOGCOLOR -DBOUT_SIGHANDLE -DBOUT_TRACK -DBOUT_VERSION_DOUBLE=4.42 -DBOUT_VERSION_STRING=\"4.4.2\" -DCHECK=2 -DHAS_PRETTY_FUNCTION -DLAPACK -DLOGCOLOR -DNCDF4 -DREVISION=GITDIR-NOTFOUND -DSIGHANDLE -DTRACK -Dbout___EXPORTS -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/mpark.variant/include -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include/pvode -I/construction/science/bout++/BOUT-dev-4.4.2/externalpackages/PVODE/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG -fPIC -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -MD -MT CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -MF CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o.d -o CMakeFiles/bout++.dir/src/physics/gyro_average.cxx.o -c /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, BoutReal, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:170:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] lap->setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/include/gyro_average.hxx:36, from /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:34: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field2D&, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:187:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] lap->setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/include/gyro_average.hxx:36, from /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:34: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade0(const Field3D&, const Field3D&, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:194:37: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] return gyroPade0(f, DC(rho), flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:175:9: note: declared here Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:194:37: warning: 'Field3D gyroPade0(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] return gyroPade0(f, DC(rho), flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:175:9: note: declared here Field3D gyroPade0(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, BoutReal, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:209:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] lap->setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/include/gyro_average.hxx:36, from /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:34: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field2D&, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:226:22: warning: 'virtual void Laplacian::setFlags(int)' is deprecated: Please use setGlobalFlags, setInnerBoundaryFlags and setOuterBoundaryFlags methods instead [-Wdeprecated-declarations] lap->setFlags(flags); ^ In file included from /construction/science/bout++/BOUT-dev-4.4.2/include/gyro_average.hxx:36, from /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:34: /construction/science/bout++/BOUT-dev-4.4.2/include/invert_laplace.hxx:189:16: note: declared here virtual void setFlags(int f); ^~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade1(const Field3D&, const Field3D&, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:232:37: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] return gyroPade1(f, DC(rho), flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:232:37: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] return gyroPade1(f, DC(rho), flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field2D gyroPade1(const Field2D&, const Field2D&, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:238:34: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] tmp = gyroPade1(tmp, rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:238:34: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] tmp = gyroPade1(tmp, rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, BoutReal, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:243:53: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:197:9: note: declared here Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:243:53: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:197:9: note: declared here Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:243:66: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:197:9: note: declared here Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:243:66: warning: 'Field3D gyroPade1(const Field3D&, BoutReal, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:197:9: note: declared here Field3D gyroPade1(const Field3D& f, BoutReal rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field2D&, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:251:53: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:251:53: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:251:66: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:251:66: warning: 'Field3D gyroPade1(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] Field3D result = gyroPade1(gyroPade1(f, rho, flags), rho, flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:214:9: note: declared here Field3D gyroPade1(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx: In function 'Field3D gyroPade2(const Field3D&, const Field3D&, int)': /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:260:37: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] return gyroPade2(f, DC(rho), flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:250:9: note: declared here Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:260:37: warning: 'Field3D gyroPade2(const Field3D&, const Field2D&, int)' is deprecated: Please use version with separate inner_boundary_flags and outer_boundary_flags [-Wdeprecated-declarations] return gyroPade2(f, DC(rho), flags); ^ /construction/science/bout++/BOUT-dev-4.4.2/src/physics/gyro_average.cxx:250:9: note: declared here Field3D gyroPade2(const Field3D& f, const Field2D& rho, int flags) { ^~~~~~~~~ --- CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o --- [ 65%] Building CXX object CMakeFiles/bout++.dir/src/physics/physicsmodel.cxx.o /usr/local/libexec/ccache/c++ -DBACKTRACE -DBOUT_BACKTRACE -DBOUT_CHECK=2 -DBOUT_FLAGS_STRING=" -Wall -Wextra -Wnull-dereference -Wno-cast-function-type -DBOUT_VERSION_STRING=\"4.4.2\" -DBOUT_VERSION_DOUBLE=4.42 -DCHECK=2 -DBOUT_CHECK=2 -DSIGHANDLE -DBOUT_SIGHANDLE -DLOGCOLOR -DBOUT_LOGCOLOR -DTRACK -DBOUT_TRACK -DBACKTRACE -DBOUT_BACKTRACE -DREVISION=GITDIR-NOTFOUND -DBOUT_HAS_PVODE -DNCDF4 -DBOUT_HAS_NETCDF -DBOUT_HAS_FFTW -DLAPACK -DBOUT_HAS_LAPACK -DHAS_PRETTY_FUNCTION -DBOUT_HAS_PRETTY_FUNCTION -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/science/bout++/BOUT-dev-4.4.2/include -isystem /usr/local/include -DNDEBUG" -DBOUT_HAS_FFTW -DBOUT_HAS_LAPACK -DBOUT_HAS_NETCDF -DBOUT_HAS_PRETTY_FUNCTION -DBOUT_HAS_PVODE -DBOUT_LOGCOLOR -DBOUT_SIGHANDLE -DBOUT_TRACK 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/construction/science/bout++/stage/usr/local/lib/cmake/bout++/bout++Targets-release.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/bout++Config.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/bout++ConfigVersion.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/BOUT++functions.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/CorrectWindowsPaths.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindClangFormat.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindFFTW.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindnetCDF.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindnetCDFCxx.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindPackageMultipass.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindLibuuid.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindPETSc.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindScoreP.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindSLEPc.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindSUNDIALS.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/FindSphinx.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/bout++/ResolveCompilerPaths.cmake -- Installing: /construction/science/bout++/stage/usr/local/include/boutconfig/__init__.py -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/mpark_variant/mpark_variant-targets.cmake -- Installing: /construction/science/bout++/stage/usr/local/include/mpark -- Installing: /construction/science/bout++/stage/usr/local/include/mpark/config.hpp -- Installing: /construction/science/bout++/stage/usr/local/include/mpark/in_place.hpp -- Installing: /construction/science/bout++/stage/usr/local/include/mpark/lib.hpp -- Installing: /construction/science/bout++/stage/usr/local/include/mpark/variant.hpp -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/mpark_variant/mpark_variant-config.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/mpark_variant/mpark_variant-config-version.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/libpvode.so.1.0.0 -- Installing: /construction/science/bout++/stage/usr/local/lib/libpvode.so -- Installing: /construction/science/bout++/stage/usr/local/lib/libpvpre.so.1.0.0 -- Installing: /construction/science/bout++/stage/usr/local/lib/libpvpre.so -- Up-to-date: /construction/science/bout++/stage/usr/local/include -- Installing: /construction/science/bout++/stage/usr/local/include/pvode -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/band.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/cvdiag.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/cvode.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/cvspgmr.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/iterativ.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/llnlmath.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/llnltyps.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/nvector.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/pvbbdpre.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/smalldense.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/spgmr.h -- Installing: /construction/science/bout++/stage/usr/local/include/pvode/vector.h -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/PVODE/PVODETargets.cmake -- Installing: /construction/science/bout++/stage/usr/local/lib/cmake/PVODE/PVODETargets-release.cmake install -m 0644 /construction/science/bout++/.build/externalpackages/PVODE/PVODEConfig.cmake /construction/science/bout++/stage/usr/local/lib/cmake/PVODE install -m 0644 /construction/science/bout++/.build/externalpackages/PVODE/PVODEConfigVersion.cmake /construction/science/bout++/stage/usr/local/lib/cmake/PVODE ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libhdf5_hl.so.200 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5_hl.so:science/hdf5 Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libhdf5.so.200 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5.so:science/hdf5 Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libzstd.so.1 from archivers/zstd but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libzstd.so:archivers/zstd Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libsz.so.2 from science/libaec but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/libaec Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/gcc12/libgfortran.so.5 from lang/gcc12 but it is not declared as a dependency Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libhwloc.so.15 from devel/hwloc2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhwloc.so:devel/hwloc2 Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libepoll-shim.so.0 from devel/libepoll-shim but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libepoll-shim.so:devel/libepoll-shim Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libjson-c.so.5 from devel/json-c but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libjson-c.so:devel/json-c Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libssh2.so.1 from security/libssh2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libssh2.so:security/libssh2 Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libpsl.so.5 from dns/libpsl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpsl.so:dns/libpsl Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libaec.so.0 from science/libaec but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libaec.so:science/libaec Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/gcc12/libquadmath.so.0 from lang/gcc12 but it is not declared as a dependency Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/gcc12/libgcc_s.so.1 from lang/gcc12 but it is not declared as a dependency Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libpciaccess.so.0 from devel/libpciaccess but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpciaccess.so:devel/libpciaccess Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libze_loader.so.1 from devel/level-zero but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libze_loader.so:devel/level-zero Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libxml2.so.2 from textproc/libxml2 but it is not declared as a dependency Warning: you need USE_GNOME+=libxml2 Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libidn2.so.0 from dns/libidn2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libidn2.so:dns/libidn2 Error: /usr/local/lib/libbout++.so.4.4.0 is linked to /usr/local/lib/libunistring.so.5 from devel/libunistring but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libunistring.so:devel/libunistring Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for bout++-4.4.2_3 file sizes/checksums [151]: 0% file sizes/checksums [151]: 66% file sizes/checksums [151]: 100% Service unavailablepacking files [151]: 0% packing files [151]: 66% packing files [151]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:55