------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/misc/py-toil XDG_CONFIG_HOME=/construction/misc/py-toil XDG_CACHE_HOME=/construction/misc/py-toil/.cache HOME=/construction/misc/py-toil TMPDIR="/tmp" PATH=/construction/misc/py-toil/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/misc/py-toil/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/misc/py-toil XDG_CONFIG_HOME=/construction/misc/py-toil XDG_CACHE_HOME=/construction/misc/py-toil/.cache HOME=/construction/misc/py-toil TMPDIR="/tmp" PATH=/construction/misc/py-toil/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/misc/py-toil/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/misc/py-toil/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-toil" EXAMPLESDIR="share/examples/py39-toil" DATADIR="share/py39-toil" WWWDIR="www/py39-toil" ETCDIR="etc/py39-toil" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-toil DOCSDIR=/usr/local/share/doc/py39-toil EXAMPLESDIR=/usr/local/share/examples/py39-toil WWWDIR=/usr/local/www/py39-toil ETCDIR=/usr/local/etc/py39-toil SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/py39-addict-2.4.0.pkg Installing /packages/All/py39-six-1.16.0.pkg Installing /packages/All/py39-dateutil-2.8.2.pkg Installing /packages/All/py39-dill-0.3.6_1.pkg Installing /packages/All/py39-docker-pycreds-0.4.0.pkg Installing /packages/All/py39-packaging-23.1.pkg Installing /packages/All/py39-pycparser-2.21.pkg Installing /packages/All/py39-cffi-1.15.1.pkg Installing /packages/All/py39-bcrypt-3.2.2.pkg Installing /packages/All/py39-cryptography-3.4.8_1,1.pkg Installing /packages/All/py39-pyasn1-0.4.8.pkg Installing /packages/All/libsodium-1.0.18.pkg Installing /packages/All/py39-pynacl-1.5.0.pkg Installing /packages/All/py39-paramiko-2.11.0_1.pkg Installing /packages/All/py39-certifi-2023.5.7.pkg Installing /packages/All/py39-charset-normalizer-3.1.0.pkg Installing /packages/All/py39-idna-3.4_1.pkg Installing /packages/All/py39-pysocks-1.7.1.pkg Installing /packages/All/py39-openssl-21.0.0,1.pkg Installing /packages/All/py39-urllib3-1.26.16,1.pkg ===== Message from py39-urllib3-1.26.16,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. Installing /packages/All/py39-requests-2.31.0.pkg Installing /packages/All/py39-sniffio-1.3.0.pkg Installing /packages/All/py39-exceptiongroup-1.1.1.pkg Installing /packages/All/py39-anyio-3.7.0.pkg Installing /packages/All/py39-async_timeout-4.0.2.pkg Installing /packages/All/py39-curio-1.6.pkg Installing /packages/All/py39-async_generator-1.10.pkg Installing /packages/All/py39-attrs-23.1.0.pkg Installing /packages/All/py39-outcome-1.2.0.pkg Installing /packages/All/py39-sortedcontainers-2.4.0.pkg Installing /packages/All/py39-trio-0.22.0_1.pkg Installing /packages/All/py39-python-socks-2.3.0.pkg Installing /packages/All/py39-wsaccel-0.6.4.pkg Installing /packages/All/py39-websocket-client-1.4.2.pkg Installing /packages/All/py39-docker-6.0.1_1.pkg Installing /packages/All/py39-wcwidth-0.2.6.pkg Installing /packages/All/py39-blessed-1.20.0.pkg Installing /packages/All/py39-prefixed-0.7.0.pkg Installing /packages/All/py39-enlighten-1.11.2.pkg Installing /packages/All/py39-psutil-5.9.5.pkg Installing /packages/All/py39-pytz-2023.3,1.pkg Installing /packages/All/py39-zipp-3.15.0.pkg Installing /packages/All/py39-importlib-metadata-6.7.0.pkg Installing /packages/All/py39-click-8.1.3.pkg Installing /packages/All/py39-elasticsearch-7.17.9.pkg Installing /packages/All/py39-texttable-1.6.7.pkg Installing /packages/All/py39-tes-1.1.1.pkg Installing /packages/All/libyaml-0.2.5.pkg Installing /packages/All/py39-yaml-6.0.pkg SUCCEEDED 00:00:16 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-toil-5.6.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-toil-5.6.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-toil-5.6.0 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-toil-5.6.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-toil-5.6.0 for building => SHA256 Checksum OK for toil-5.6.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-toil-5.6.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-toil-5.6.0 for building ===> Extracting for py39-toil-5.6.0 => SHA256 Checksum OK for toil-5.6.0.tar.gz. Extracted Memory Use: 2.37M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-toil-5.6.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-toil-5.6.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-toil-5.6.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-toil-5.6.0 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-toil-5.6.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-toil-5.6.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-toil-5.6.0 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-toil-5.6.0 setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-toil-5.6.0 setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp running build running build_py creating build creating build/lib creating build/lib/toil copying src/toil/__init__.py -> build/lib/toil copying src/toil/bus.py -> build/lib/toil copying src/toil/common.py -> build/lib/toil copying src/toil/deferred.py -> build/lib/toil copying src/toil/job.py -> build/lib/toil copying src/toil/leader.py -> build/lib/toil copying src/toil/realtimeLogger.py -> build/lib/toil copying src/toil/resource.py -> build/lib/toil copying src/toil/serviceManager.py -> build/lib/toil copying src/toil/statsAndLogging.py -> build/lib/toil copying src/toil/toilState.py -> build/lib/toil copying src/toil/version.py -> build/lib/toil copying src/toil/worker.py -> build/lib/toil creating build/lib/toil/batchSystems copying src/toil/batchSystems/__init__.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/abstractBatchSystem.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/abstractGridEngineBatchSystem.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/cleanup_support.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/contained_executor.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/gridengine.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/htcondor.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/kubernetes.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/local_support.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/lsf.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/lsfHelper.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/options.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/parasol.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/registry.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/singleMachine.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/slurm.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/tes.py -> build/lib/toil/batchSystems copying src/toil/batchSystems/torque.py -> build/lib/toil/batchSystems creating build/lib/toil/cwl copying src/toil/cwl/__init__.py -> build/lib/toil/cwl copying src/toil/cwl/conftest.py -> build/lib/toil/cwl copying src/toil/cwl/cwltoil.py -> build/lib/toil/cwl copying src/toil/cwl/utils.py -> build/lib/toil/cwl creating build/lib/toil/fileStores copying src/toil/fileStores/__init__.py -> build/lib/toil/fileStores copying src/toil/fileStores/abstractFileStore.py -> build/lib/toil/fileStores copying src/toil/fileStores/cachingFileStore.py -> build/lib/toil/fileStores copying src/toil/fileStores/nonCachingFileStore.py -> build/lib/toil/fileStores creating build/lib/toil/jobStores copying src/toil/jobStores/__init__.py -> build/lib/toil/jobStores copying src/toil/jobStores/abstractJobStore.py -> build/lib/toil/jobStores copying src/toil/jobStores/conftest.py -> build/lib/toil/jobStores copying src/toil/jobStores/fileJobStore.py -> build/lib/toil/jobStores copying src/toil/jobStores/googleJobStore.py -> build/lib/toil/jobStores copying src/toil/jobStores/utils.py -> build/lib/toil/jobStores creating build/lib/toil/lib copying src/toil/lib/__init__.py -> build/lib/toil/lib copying src/toil/lib/bioio.py -> build/lib/toil/lib copying src/toil/lib/compatibility.py -> build/lib/toil/lib copying src/toil/lib/conversions.py -> build/lib/toil/lib copying src/toil/lib/docker.py -> build/lib/toil/lib copying src/toil/lib/ec2.py -> build/lib/toil/lib copying src/toil/lib/ec2nodes.py -> build/lib/toil/lib copying src/toil/lib/exceptions.py -> build/lib/toil/lib copying src/toil/lib/expando.py -> build/lib/toil/lib copying src/toil/lib/generatedEC2Lists.py -> build/lib/toil/lib copying src/toil/lib/humanize.py -> build/lib/toil/lib copying src/toil/lib/io.py -> build/lib/toil/lib copying src/toil/lib/iterables.py -> build/lib/toil/lib copying src/toil/lib/memoize.py -> build/lib/toil/lib copying src/toil/lib/misc.py -> build/lib/toil/lib copying src/toil/lib/objects.py -> build/lib/toil/lib copying src/toil/lib/resources.py -> build/lib/toil/lib copying src/toil/lib/retry.py -> build/lib/toil/lib copying src/toil/lib/threading.py -> build/lib/toil/lib copying src/toil/lib/throttle.py -> build/lib/toil/lib creating build/lib/toil/provisioners copying src/toil/provisioners/__init__.py -> build/lib/toil/provisioners copying src/toil/provisioners/abstractProvisioner.py -> build/lib/toil/provisioners copying src/toil/provisioners/clusterScaler.py -> build/lib/toil/provisioners copying src/toil/provisioners/gceProvisioner.py -> build/lib/toil/provisioners copying src/toil/provisioners/node.py -> build/lib/toil/provisioners creating build/lib/toil/server copying src/toil/server/__init__.py -> build/lib/toil/server copying src/toil/server/app.py -> build/lib/toil/server copying src/toil/server/celery_app.py -> build/lib/toil/server copying src/toil/server/utils.py -> build/lib/toil/server copying src/toil/server/wsgi_app.py -> build/lib/toil/server creating build/lib/toil/test copying src/toil/test/__init__.py -> build/lib/toil/test creating build/lib/toil/utils copying src/toil/utils/__init__.py -> build/lib/toil/utils copying src/toil/utils/toilClean.py -> build/lib/toil/utils copying src/toil/utils/toilDebugFile.py -> build/lib/toil/utils copying src/toil/utils/toilDebugJob.py -> build/lib/toil/utils copying src/toil/utils/toilDestroyCluster.py -> build/lib/toil/utils copying src/toil/utils/toilKill.py -> build/lib/toil/utils copying src/toil/utils/toilLaunchCluster.py -> build/lib/toil/utils copying src/toil/utils/toilMain.py -> build/lib/toil/utils copying src/toil/utils/toilRsyncCluster.py -> build/lib/toil/utils copying src/toil/utils/toilServer.py -> build/lib/toil/utils copying src/toil/utils/toilSshCluster.py -> build/lib/toil/utils copying src/toil/utils/toilStats.py -> build/lib/toil/utils copying src/toil/utils/toilStatus.py -> build/lib/toil/utils copying src/toil/utils/toilUpdateEC2Instances.py -> build/lib/toil/utils creating build/lib/toil/wdl copying src/toil/wdl/__init__.py -> build/lib/toil/wdl copying src/toil/wdl/toilwdl.py -> build/lib/toil/wdl copying src/toil/wdl/utils.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_analysis.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_functions.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_synthesis.py -> build/lib/toil/wdl copying src/toil/wdl/wdl_types.py -> build/lib/toil/wdl creating build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/__init__.py -> build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/batchSystem.py -> build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/conftest.py -> build/lib/toil/batchSystems/mesos copying src/toil/batchSystems/mesos/executor.py -> build/lib/toil/batchSystems/mesos creating build/lib/toil/batchSystems/mesos/test copying src/toil/batchSystems/mesos/test/__init__.py -> build/lib/toil/batchSystems/mesos/test creating build/lib/toil/jobStores/aws copying src/toil/jobStores/aws/__init__.py -> build/lib/toil/jobStores/aws copying src/toil/jobStores/aws/jobStore.py -> build/lib/toil/jobStores/aws copying src/toil/jobStores/aws/utils.py -> build/lib/toil/jobStores/aws creating build/lib/toil/lib/aws copying src/toil/lib/aws/__init__.py -> build/lib/toil/lib/aws copying src/toil/lib/aws/ami.py -> build/lib/toil/lib/aws copying src/toil/lib/aws/utils.py -> build/lib/toil/lib/aws creating build/lib/toil/lib/encryption copying src/toil/lib/encryption/__init__.py -> build/lib/toil/lib/encryption copying src/toil/lib/encryption/_dummy.py -> build/lib/toil/lib/encryption copying src/toil/lib/encryption/_nacl.py -> build/lib/toil/lib/encryption copying src/toil/lib/encryption/conftest.py -> build/lib/toil/lib/encryption creating build/lib/toil/provisioners/aws copying src/toil/provisioners/aws/__init__.py -> build/lib/toil/provisioners/aws copying src/toil/provisioners/aws/awsProvisioner.py -> build/lib/toil/provisioners/aws creating build/lib/toil/server/api_spec copying src/toil/server/api_spec/__init__.py -> build/lib/toil/server/api_spec creating build/lib/toil/server/wes copying src/toil/server/wes/__init__.py -> build/lib/toil/server/wes copying src/toil/server/wes/abstract_backend.py -> build/lib/toil/server/wes copying src/toil/server/wes/tasks.py -> build/lib/toil/server/wes copying src/toil/server/wes/toil_backend.py -> build/lib/toil/server/wes creating build/lib/toil/wdl/versions copying src/toil/wdl/versions/__init__.py -> build/lib/toil/wdl/versions copying src/toil/wdl/versions/dev.py -> build/lib/toil/wdl/versions copying src/toil/wdl/versions/draft2.py -> build/lib/toil/wdl/versions copying src/toil/wdl/versions/v1.py -> build/lib/toil/wdl/versions copying src/toil/server/api_spec/workflow_execution_service.swagger.yaml -> build/lib/toil/server/api_spec SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-toil-5.6.0 depends on package: py39-addict>=2.2.1 - found ===> py39-toil-5.6.0 depends on package: py39-dateutil>0 - found ===> py39-toil-5.6.0 depends on package: py39-dill>=0.3.2 - found ===> py39-toil-5.6.0 depends on package: py39-docker>0 - found ===> py39-toil-5.6.0 depends on package: py39-enlighten>=1.5.2 - found ===> py39-toil-5.6.0 depends on package: py39-psutil>=3.0.1 - found ===> py39-toil-5.6.0 depends on package: py39-pytz>=2012 - found ===> py39-toil-5.6.0 depends on package: py39-requests>=2 - found ===> py39-toil-5.6.0 depends on package: py39-tes>0 - found ===> py39-toil-5.6.0 depends on package: py39-yaml>=5 - found ===> py39-toil-5.6.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-toil-5.6.0 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-toil-5.6.0 ===> py39-toil-5.6.0 depends on package: py39-addict>=2.2.1 - found ===> py39-toil-5.6.0 depends on package: py39-dateutil>0 - found ===> py39-toil-5.6.0 depends on package: py39-dill>=0.3.2 - found ===> py39-toil-5.6.0 depends on package: py39-docker>0 - found ===> py39-toil-5.6.0 depends on package: py39-enlighten>=1.5.2 - found ===> py39-toil-5.6.0 depends on package: py39-psutil>=3.0.1 - found ===> py39-toil-5.6.0 depends on package: py39-pytz>=2012 - found ===> py39-toil-5.6.0 depends on package: py39-requests>=2 - found ===> py39-toil-5.6.0 depends on package: py39-tes>0 - found ===> py39-toil-5.6.0 depends on package: py39-yaml>=5 - found ===> py39-toil-5.6.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-toil-5.6.0 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list setup.py:14: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running install_lib creating /construction/misc/py-toil/stage/usr/local/lib/python3.9 creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/bus.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/common.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/deferred.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/job.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/leader.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/realtimeLogger.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/resource.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/serviceManager.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/statsAndLogging.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/toilState.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/version.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil copying build/lib/toil/worker.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/abstractBatchSystem.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/abstractGridEngineBatchSystem.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/cleanup_support.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/contained_executor.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/gridengine.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/htcondor.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/kubernetes.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/local_support.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/lsf.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/lsfHelper.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/options.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/parasol.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/registry.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/singleMachine.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/slurm.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/tes.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems copying build/lib/toil/batchSystems/torque.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/mesos/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/mesos/batchSystem.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/mesos/conftest.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos copying build/lib/toil/batchSystems/mesos/executor.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/test copying build/lib/toil/batchSystems/mesos/test/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/test creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/conftest.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/cwltoil.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl copying build/lib/toil/cwl/utils.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/abstractFileStore.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/cachingFileStore.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores copying build/lib/toil/fileStores/nonCachingFileStore.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/abstractJobStore.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/conftest.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/fileJobStore.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/googleJobStore.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores copying build/lib/toil/jobStores/utils.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws copying build/lib/toil/jobStores/aws/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws copying build/lib/toil/jobStores/aws/jobStore.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws copying build/lib/toil/jobStores/aws/utils.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/bioio.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/compatibility.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/conversions.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/docker.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/ec2.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/ec2nodes.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/exceptions.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/expando.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/generatedEC2Lists.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/humanize.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/io.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/iterables.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/memoize.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/misc.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/objects.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/resources.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/retry.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/threading.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib copying build/lib/toil/lib/throttle.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws copying build/lib/toil/lib/aws/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws copying build/lib/toil/lib/aws/ami.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws copying build/lib/toil/lib/aws/utils.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/_dummy.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/_nacl.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption copying build/lib/toil/lib/encryption/conftest.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/abstractProvisioner.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/clusterScaler.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/gceProvisioner.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners copying build/lib/toil/provisioners/node.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws copying build/lib/toil/provisioners/aws/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws copying build/lib/toil/provisioners/aws/awsProvisioner.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/app.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/celery_app.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/utils.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server copying build/lib/toil/server/wsgi_app.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec copying build/lib/toil/server/api_spec/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec copying build/lib/toil/server/api_spec/workflow_execution_service.swagger.yaml -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/abstract_backend.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/tasks.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes copying build/lib/toil/server/wes/toil_backend.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/test copying build/lib/toil/test/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/test creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilClean.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilDebugFile.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilDebugJob.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilDestroyCluster.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilKill.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilLaunchCluster.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilMain.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilRsyncCluster.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilServer.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilSshCluster.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilStats.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilStatus.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils copying build/lib/toil/utils/toilUpdateEC2Instances.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/toilwdl.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/utils.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_analysis.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_functions.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_synthesis.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl copying build/lib/toil/wdl/wdl_types.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl creating /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/__init__.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/dev.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/draft2.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions copying build/lib/toil/wdl/versions/v1.py -> /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/bus.py to bus.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/common.py to common.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/deferred.py to deferred.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/job.py to job.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/leader.py to leader.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/realtimeLogger.py to realtimeLogger.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/resource.py to resource.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/serviceManager.py to serviceManager.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/statsAndLogging.py to statsAndLogging.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/toilState.py to toilState.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/version.py to version.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/worker.py to worker.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/abstractBatchSystem.py to abstractBatchSystem.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/abstractGridEngineBatchSystem.py to abstractGridEngineBatchSystem.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/cleanup_support.py to cleanup_support.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/contained_executor.py to contained_executor.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/gridengine.py to gridengine.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/htcondor.py to htcondor.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/kubernetes.py to kubernetes.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/local_support.py to local_support.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/lsf.py to lsf.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/lsfHelper.py to lsfHelper.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/options.py to options.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/parasol.py to parasol.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/registry.py to registry.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/singleMachine.py to singleMachine.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/slurm.py to slurm.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/tes.py to tes.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/torque.py to torque.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/batchSystem.py to batchSystem.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/conftest.py to conftest.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/executor.py to executor.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/batchSystems/mesos/test/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl/conftest.py to conftest.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl/cwltoil.py to cwltoil.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/cwl/utils.py to utils.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/abstractFileStore.py to abstractFileStore.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/cachingFileStore.py to cachingFileStore.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/fileStores/nonCachingFileStore.py to nonCachingFileStore.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/abstractJobStore.py to abstractJobStore.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/conftest.py to conftest.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/fileJobStore.py to fileJobStore.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/googleJobStore.py to googleJobStore.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/utils.py to utils.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws/jobStore.py to jobStore.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/jobStores/aws/utils.py to utils.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/bioio.py to bioio.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/compatibility.py to compatibility.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/conversions.py to conversions.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/docker.py to docker.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/ec2.py to ec2.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/ec2nodes.py to ec2nodes.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/exceptions.py to exceptions.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/expando.py to expando.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/generatedEC2Lists.py to generatedEC2Lists.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/humanize.py to humanize.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/io.py to io.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/iterables.py to iterables.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/memoize.py to memoize.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/misc.py to misc.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/objects.py to objects.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/resources.py to resources.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/retry.py to retry.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/threading.py to threading.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/throttle.py to throttle.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws/ami.py to ami.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/aws/utils.py to utils.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/_dummy.py to _dummy.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/_nacl.py to _nacl.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/lib/encryption/conftest.py to conftest.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/abstractProvisioner.py to abstractProvisioner.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/clusterScaler.py to clusterScaler.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/gceProvisioner.py to gceProvisioner.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/node.py to node.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/provisioners/aws/awsProvisioner.py to awsProvisioner.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/app.py to app.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/celery_app.py to celery_app.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/utils.py to utils.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wsgi_app.py to wsgi_app.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/api_spec/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/abstract_backend.py to abstract_backend.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/tasks.py to tasks.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/server/wes/toil_backend.py to toil_backend.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/test/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilClean.py to toilClean.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilDebugFile.py to toilDebugFile.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilDebugJob.py to toilDebugJob.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilDestroyCluster.py to toilDestroyCluster.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilKill.py to toilKill.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilLaunchCluster.py to toilLaunchCluster.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilMain.py to toilMain.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilRsyncCluster.py to toilRsyncCluster.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilServer.py to toilServer.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilSshCluster.py to toilSshCluster.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilStats.py to toilStats.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilStatus.py to toilStatus.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/utils/toilUpdateEC2Instances.py to toilUpdateEC2Instances.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/toilwdl.py to toilwdl.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/utils.py to utils.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_analysis.py to wdl_analysis.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_functions.py to wdl_functions.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_synthesis.py to wdl_synthesis.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/wdl_types.py to wdl_types.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/dev.py to dev.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/draft2.py to draft2.cpython-39.pyc byte-compiling /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil/wdl/versions/v1.py to v1.cpython-39.pyc writing byte-compilation script '/tmp/tmpj0xn4niz.py' /usr/local/bin/python3.9 /tmp/tmpj0xn4niz.py removing /tmp/tmpj0xn4niz.py running install_egg_info running egg_info writing src/toil.egg-info/PKG-INFO writing dependency_links to src/toil.egg-info/dependency_links.txt writing entry points to src/toil.egg-info/entry_points.txt writing requirements to src/toil.egg-info/requires.txt writing top-level names to src/toil.egg-info/top_level.txt reading manifest file 'src/toil.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'src/toil.egg-info/SOURCES.txt' Copying src/toil.egg-info to /construction/misc/py-toil/stage/usr/local/lib/python3.9/site-packages/toil-5.6.0-py3.9.egg-info running install_scripts Installing _toil_contained_executor script to /construction/misc/py-toil/stage/usr/local/bin Installing _toil_mesos_executor script to /construction/misc/py-toil/stage/usr/local/bin Installing _toil_worker script to /construction/misc/py-toil/stage/usr/local/bin Installing cwltoil script to /construction/misc/py-toil/stage/usr/local/bin Installing toil script to /construction/misc/py-toil/stage/usr/local/bin Installing toil-cwl-runner script to /construction/misc/py-toil/stage/usr/local/bin Installing toil-wdl-runner script to /construction/misc/py-toil/stage/usr/local/bin writing list of installed files to '/construction/misc/py-toil/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/_toil_contained_executor --> bin/_toil_contained_executor-3.9 Link: @bin/_toil_contained_executor --> bin/_toil_contained_executor-3.9 Move: bin/_toil_mesos_executor --> bin/_toil_mesos_executor-3.9 Link: @bin/_toil_mesos_executor --> bin/_toil_mesos_executor-3.9 Move: bin/_toil_worker --> bin/_toil_worker-3.9 Link: @bin/_toil_worker --> bin/_toil_worker-3.9 Move: bin/cwltoil --> bin/cwltoil-3.9 Link: @bin/cwltoil --> bin/cwltoil-3.9 Move: bin/toil --> bin/toil-3.9 Link: @bin/toil --> bin/toil-3.9 Move: bin/toil-cwl-runner --> bin/toil-cwl-runner-3.9 Link: @bin/toil-cwl-runner --> bin/toil-cwl-runner-3.9 Move: bin/toil-wdl-runner --> bin/toil-wdl-runner-3.9 Link: @bin/toil-wdl-runner --> bin/toil-wdl-runner-3.9 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:14 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-toil-5.6.0 file sizes/checksums [390]: 0% file sizes/checksums [390]: 25% file sizes/checksums [390]: 51% file sizes/checksums [390]: 76% file sizes/checksums [390]: 100% Service unavailablepacking files [390]: 0% packing files [390]: 25% packing files [390]: 51% packing files [390]: 76% packing files [390]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:00:40