------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/construction/devel/R-cran-rJava XDG_CONFIG_HOME=/construction/devel/R-cran-rJava XDG_CACHE_HOME=/construction/devel/R-cran-rJava/.cache HOME=/construction/devel/R-cran-rJava TMPDIR="/tmp" PATH=/construction/devel/R-cran-rJava/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/devel/R-cran-rJava/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- JAVA_HOME=/usr/local/openjdk8 JAVA=/usr/local/openjdk8/bin/java JAVAC=/usr/local/openjdk8/bin/javac JAVAH=/usr/local/openjdk8/bin/javah JAR=/usr/local/openjdk8/bin/jar LD_LIBRARY_PATH="/usr/local/openjdk8/jre/lib/x86_64/server" JAVA_LD_LIBRARY_PATH="/usr/local/openjdk8/jre/lib/x86_64/server" JAVA_LIBS="-Wl,-rpath=/usr/local/openjdk8/jre/lib/x86_64/server -L/usr/local/openjdk8/jre/lib/x86_64/server -ljvm -lpthread" JAVA_CPPFLAGS="-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/dragonfly" F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/construction/devel/R-cran-rJava XDG_CONFIG_HOME=/construction/devel/R-cran-rJava XDG_CACHE_HOME=/construction/devel/R-cran-rJava/.cache HOME=/construction/devel/R-cran-rJava TMPDIR="/tmp" PATH=/construction/devel/R-cran-rJava/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/devel/R-cran-rJava/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=""-Wl,-rpath=/usr/local/openjdk8/jre/lib/x86_64/server " -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/devel/R-cran-rJava/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" R_MOD_DIR=lib/R/library/rJava OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/rJava" EXAMPLESDIR="share/examples/rJava" DATADIR="share/rJava" WWWDIR="www/rJava" ETCDIR="etc/rJava" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/rJava DOCSDIR=/usr/local/share/doc/rJava EXAMPLESDIR=/usr/local/share/examples/rJava WWWDIR=/usr/local/www/rJava ETCDIR=/usr/local/etc/rJava SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/brotli-1.0.9,1.pkg Installing /packages/All/png-1.6.39.pkg Installing /packages/All/freetype2-2.12.1_2.pkg ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/fontconfig-2.14.2,1.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/libinotify-20211018.pkg ===== Message from libinotify-20211018: -- You might want to consider increasing the kern.maxfiles tunable if you plan to use this library for applications that need to monitor activity of a lot of files. Installing /packages/All/alsa-lib-1.2.2_1.pkg ===== Message from alsa-lib-1.2.2_1: -- ===> NOTICE: The alsa-lib port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/giflib-5.2.1.pkg Installing /packages/All/javavmwrapper-2.7.9.pkg Installing /packages/All/libfontenc-1.1.4.pkg Installing /packages/All/mkfontscale-1.2.1.pkg Installing /packages/All/dejavu-2.37_1.pkg Running fc-cache to build fontconfig cache... ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/java-zoneinfo-2021.e.pkg Installing /packages/All/libXau-1.0.9.pkg Installing /packages/All/xorgproto-2022.1_1.pkg Installing /packages/All/libXdmcp-1.1.3.pkg Installing /packages/All/libxcb-1.15_1.pkg Installing /packages/All/libX11-1.8.6,1.pkg Installing /packages/All/libXext-1.3.4,1.pkg Installing /packages/All/libXfixes-6.0.0.pkg Installing /packages/All/libXi-1.8,1.pkg Installing /packages/All/libXrender-0.9.10_2.pkg Installing /packages/All/libICE-1.1.0_1,1.pkg Installing /packages/All/libSM-1.2.3,1.pkg Installing /packages/All/libXt-1.2.1,1.pkg Installing /packages/All/libXtst-1.2.3_2.pkg Installing /packages/All/openjdk8-8.372.07.1_1.pkg ===== Message from openjdk8-8.372.07.1_1: -- This OpenJDK implementation requires procfs(5) mounted on /proc. If you have not done it yet, please do the following: mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: proc /proc procfs rw 0 0 Installing /packages/All/libnghttp2-1.53.0.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/libssh2-1.11.0,3.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libunistring-1.1.pkg Installing /packages/All/libidn2-2.3.4.pkg Installing /packages/All/libpsl-0.21.2_3.pkg Installing /packages/All/ca_root_nss-3.89.1.pkg ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/curl-8.1.2.pkg Installing /packages/All/pcre2-10.42.pkg Installing /packages/All/graphite2-1.3.14.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/libiconv-1.17.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/glib-2.76.4,2.pkg Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/harfbuzz-7.3.0.pkg Installing /packages/All/icu-73.2,1.pkg Installing /packages/All/libdeflate-1.18.pkg Installing /packages/All/jbigkit-2.1_1.pkg Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/jpeg-turbo-2.1.5.1.pkg Installing /packages/All/tiff-4.4.0_1.pkg Installing /packages/All/libglvnd-1.6.0.pkg Installing /packages/All/pixman-0.42.2.pkg Installing /packages/All/cairo-1.17.4_2,3.pkg Installing /packages/All/fribidi-1.0.13.pkg Installing /packages/All/libdatrie-0.2.13_1.pkg Installing /packages/All/libthai-0.1.29.pkg ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/font-bh-ttf-1.0.3_4.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/font-misc-meltho-1.0.3_4.pkg Installing /packages/All/font-misc-ethiopic-1.0.4.pkg Installing /packages/All/encodings-1.0.5,1.pkg Installing /packages/All/xorg-fonts-truetype-7.7_1.pkg Installing /packages/All/libXft-2.3.7.pkg Installing /packages/All/pango-1.50.14.pkg Installing /packages/All/tcl86-8.6.13.pkg Installing /packages/All/libXScrnSaver-1.2.4.pkg Installing /packages/All/tk86-8.6.13.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmake-4.3_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gmp-6.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpfr-4.2.0_1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpc-1.3.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.40_4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gcc12-12.2.0_6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/libidn-1.38.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/jbig2dec-0.19.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/lcms2-2.15_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/openjpeg-2.5.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libpaper-1.1.28.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libdaemon-0.14_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/dbus-1.14.6,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/dbus-glib-0.112.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gdbm-1.23.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libevent-2.1.12.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gnome_subr-1.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/avahi-app-0.8_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/nettle-3.9.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libtasn1-4.19.0.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/p11-kit-0.24.1_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/gnutls-3.7.9.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/cups-2.4.6.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/poppler-data-0.4.12.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ghostscript9-agpl-base-9.56.1_11.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ghostscript9-agpl-base-9.56.1_11: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Installing /packages/All/libXmu-1.1.3,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/R-4.3.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:43 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-rJava-1.0.6_3 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-rJava-1.0.6_3 for building => SHA256 Checksum OK for rJava_1.0-6.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-rJava-1.0.6_3 for building ===> Extracting for R-cran-rJava-1.0.6_3 => SHA256 Checksum OK for rJava_1.0-6.tar.gz. Extracted Memory Use: 4.97M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for R-cran-rJava-1.0.6_3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/bin/R - found ===> R-cran-rJava-1.0.6_3 depends on executable: gfortran12 - found ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on shared library: libicuuc.so - found (/usr/local/lib/libicuuc.so) ===> R-cran-rJava-1.0.6_3 depends on shared library: libpcre2-8.so - found (/usr/local/lib/libpcre2-8.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/bin/R - found ===> R-cran-rJava-1.0.6_3 depends on executable: gfortran12 - found ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/bin/as - found ===> R-cran-rJava-1.0.6_3 depends on shared library: libicuuc.so - found (/usr/local/lib/libicuuc.so) ===> R-cran-rJava-1.0.6_3 depends on shared library: libpcre2-8.so - found (/usr/local/lib/libpcre2-8.so) ===> Configuring for R-cran-rJava-1.0.6_3 /usr/local/bin/R CMD javareconf -e exit Java interpreter : /usr/local/bin/java Java version : 1.8.0_372 Java home path : /usr/local/openjdk8/jre Java compiler : /usr/local/bin/javac Java headers gen.: /usr/local/bin/javah Java archive tool: /usr/local/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/freebsd detected JNI linker flags : -L$(JAVA_HOME)/lib/amd64/server -ljvm using C compiler: 'cc 8.3 [DragonFly] Release/2019-02-22' gmake[1]: Entering directory '/tmp/Rjavareconf.Q54Pvw' cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/freebsd -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c conftest.c -o conftest.o cc -shared -L/usr/local/lib/R/lib -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -L/usr/local/lib -o conftest.so conftest.o -L/usr/local/openjdk8/jre/lib/amd64/server -ljvm -L/usr/local/lib/R/lib -lR gmake[1]: Leaving directory '/tmp/Rjavareconf.Q54Pvw' The following Java variables have been exported: JAVA_HOME JAVA JAVAC JAVAH JAR JAVA_LIBS JAVA_CPPFLAGS JAVA_LD_LIBRARY_PATH Running: exit SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/bin/R - found ===> R-cran-rJava-1.0.6_3 depends on executable: gfortran12 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for R-cran-rJava-1.0.6_3 ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/openjdk8/bin/java - found ===> R-cran-rJava-1.0.6_3 depends on file: /usr/local/bin/R - found ===> R-cran-rJava-1.0.6_3 depends on executable: gfortran12 - found ===> Generating temporary packing list * installing *source* package 'rJava' ... ** package 'rJava' successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for string.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for an ANSI C-conforming const... yes checking whether time.h and sys/time.h may both be included... yes configure: checking whether cc supports static inline... yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking Java support in R... present: interpreter : '/usr/local/openjdk8/bin/java' archiver : '/usr/local/openjdk8/bin/jar' compiler : '/usr/local/openjdk8/bin/javac' header prep.: '/usr/local/openjdk8/bin/javah' cpp flags : '-I/usr/local/openjdk8/jre/../include -I/usr/local/openjdk8/jre/../include/dragonfly' java libs : '-Wl,-rpath=/usr/local/openjdk8/jre/lib/x86_64/server -L/usr/local/openjdk8/jre/lib/x86_64/server -ljvm -lpthread' checking whether Java run-time works... yes checking whether -Xrs is supported... yes checking whether -Xrs will be used... yes checking whether JVM will be loaded dynamically... no checking whether JNI programs can be compiled... configure: error: Cannot compile a simple JNI program. See config.log for details. Make sure you have Java Development Kit installed and correctly registered in R. If in doubt, re-run "R CMD javareconf" as root. ERROR: configuration failed for package 'rJava' * removing '/construction/devel/R-cran-rJava/stage/usr/local/lib/R/library/rJava' *** Error code 1 Stop. make: stopped in /xports/devel/R-cran-rJava FAILED 00:00:04