------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PKG_CONFIG=pkgconf XDG_DATA_HOME=/construction/biology/wfa2-lib XDG_CONFIG_HOME=/construction/biology/wfa2-lib XDG_CACHE_HOME=/construction/biology/wfa2-lib/.cache HOME=/construction/biology/wfa2-lib TMPDIR="/tmp" PATH=/construction/biology/wfa2-lib/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/wfa2-lib/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/wfa2-lib XDG_CONFIG_HOME=/construction/biology/wfa2-lib XDG_CACHE_HOME=/construction/biology/wfa2-lib/.cache HOME=/construction/biology/wfa2-lib TMPDIR="/tmp" PATH=/construction/biology/wfa2-lib/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/wfa2-lib/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/wfa2-lib/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/wfa2-lib" EXAMPLESDIR="share/examples/wfa2-lib" DATADIR="share/wfa2-lib" WWWDIR="www/wfa2-lib" ETCDIR="etc/wfa2-lib" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/wfa2-lib DOCSDIR=/usr/local/share/doc/wfa2-lib EXAMPLESDIR=/usr/local/share/examples/wfa2-lib WWWDIR=/usr/local/www/wfa2-lib ETCDIR=/usr/local/etc/wfa2-lib SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/pkgconf-1.8.1,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. SUCCEEDED 00:00:08 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by wfa2-lib-2.3.2_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by wfa2-lib-2.3.2_1 for building => SHA256 Checksum OK for smarco-WFA2-lib-v2.3.2_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by wfa2-lib-2.3.2_1 for building ===> Extracting for wfa2-lib-2.3.2_1 => SHA256 Checksum OK for smarco-WFA2-lib-v2.3.2_GH0.tar.gz. Extracted Memory Use: 9.71M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for wfa2-lib-2.3.2_1 ===> Applying ports patches for wfa2-lib-2.3.2_1 from /xports/biology/wfa2-lib/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/bin/cmake - found ===> wfa2-lib-2.3.2_1 depends on package: pkgconf>=1.3.0_1 - found ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/bin/cmake - found ===> wfa2-lib-2.3.2_1 depends on package: pkgconf>=1.3.0_1 - found ===> wfa2-lib-2.3.2_1 depends on file: /usr/local/bin/ccache - found ===> Configuring for wfa2-lib-2.3.2_1 ===> Performing out-of-source build /bin/mkdir -p /construction/biology/wfa2-lib/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/local/bin/pkgconf (found version "1.8.1") -- -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed -- Looking for pthread_create in pthreads -- Looking for pthread_create in pthreads - not found -- Looking for pthread_create in pthread -- Looking for pthread_create in pthread - found -- Found Threads: TRUE -- Configuring done (4.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /construction/biology/wfa2-lib/.build SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for wfa2-lib-2.3.2_1 /usr/local/bin/cmake -S/construction/biology/wfa2-lib/WFA2-lib-2.3.2 -B/construction/biology/wfa2-lib/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/wfa2-lib/.build/CMakeFiles /construction/biology/wfa2-lib/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/wfa2_static.dir/all --- --- CMakeFiles/wfa2.dir/all --- --- CMakeFiles/wfa2_static.dir/all --- /usr/bin/make -f CMakeFiles/wfa2_static.dir/build.make CMakeFiles/wfa2_static.dir/depend --- CMakeFiles/wfa2.dir/all --- /usr/bin/make -f CMakeFiles/wfa2.dir/build.make CMakeFiles/wfa2.dir/depend --- CMakeFiles/wfa2_static.dir/all --- --- CMakeFiles/wfa2_static.dir/depend --- --- CMakeFiles/wfa2.dir/all --- --- CMakeFiles/wfa2.dir/depend --- --- CMakeFiles/wfa2_static.dir/all --- cd /construction/biology/wfa2-lib/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/wfa2-lib/WFA2-lib-2.3.2 /construction/biology/wfa2-lib/WFA2-lib-2.3.2 /construction/biology/wfa2-lib/.build /construction/biology/wfa2-lib/.build /construction/biology/wfa2-lib/.build/CMakeFiles/wfa2_static.dir/DependInfo.cmake --- CMakeFiles/wfa2.dir/all --- cd /construction/biology/wfa2-lib/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/wfa2-lib/WFA2-lib-2.3.2 /construction/biology/wfa2-lib/WFA2-lib-2.3.2 /construction/biology/wfa2-lib/.build /construction/biology/wfa2-lib/.build /construction/biology/wfa2-lib/.build/CMakeFiles/wfa2.dir/DependInfo.cmake --- CMakeFiles/wfa2_static.dir/all --- /usr/bin/make -f CMakeFiles/wfa2_static.dir/build.make CMakeFiles/wfa2_static.dir/build --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_aligner.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_attributes.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialigner.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_components.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o --- [ 1%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_affine2p.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_compute_affine2p.c --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o --- [ 2%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o --- [ 3%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o --- /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_backtrace.c --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o --- /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_bialign.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_bialign.c --- CMakeFiles/wfa2.dir/all --- /usr/bin/make -f CMakeFiles/wfa2.dir/build.make CMakeFiles/wfa2.dir/build --- CMakeFiles/wfa2_static.dir/all --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o --- [ 5%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_buffer.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_backtrace_buffer.c --- CMakeFiles/wfa2.dir/all --- --- CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o --- --- CMakeFiles/wfa2_static.dir/all --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o --- [ 6%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_align.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_align.c --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_edit.c.o --- --- CMakeFiles/wfa2.dir/all --- [ 7%] Building C object CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o --- CMakeFiles/wfa2_static.dir/all --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o --- [ 8%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o --- CMakeFiles/wfa2.dir/all --- /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -Dwfa2_EXPORTS -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o -MF CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o.d -o CMakeFiles/wfa2.dir/wavefront/wavefront_align.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_align.c --- CMakeFiles/wfa2_static.dir/all --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o --- [ 10%] Building C object CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute_linear.c.o --- --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o --- /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_backtrace_offload.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_backtrace_offload.c --- CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o --- /usr/local/libexec/ccache/cc -DVERSION=\"v2.3\" -DWFA2LIB_VERSION=\"v2.3\" -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/utils -I/construction/biology/wfa2-lib/WFA2-lib-2.3.2/. -pipe -O2 -fno-strict-aliasing -D_FILE_OFFSET_BITS=64 -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o -MF CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o.d -o CMakeFiles/wfa2_static.dir/wavefront/wavefront_compute.c.o -c /construction/biology/wfa2-lib/WFA2-lib-2.3.2/wavefront/wavefront_compute.c --- 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/construction/biology/wfa2-lib/stage/usr/local/include/wfa2lib/system/mm_allocator.h -- Installing: /construction/biology/wfa2-lib/stage/usr/local/include/wfa2lib/system/mm_stack.h -- Installing: /construction/biology/wfa2-lib/stage/usr/local/include/wfa2lib/system/profiler_counter.h -- Installing: /construction/biology/wfa2-lib/stage/usr/local/include/wfa2lib/system/profiler_timer.h ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for wfa2-lib-2.3.2_1 file sizes/checksums [46]: 0% file sizes/checksums [46]: 100% Service unavailablepacking files [46]: 0% packing files [46]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:17