------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- ===> The following configuration options are available for sra-tools-2.11.0_4: DEBUG=off: Build with debugging support OPTIMIZED_CFLAGS=off: Use extra compiler optimizations TEST=off: Build and/or run tests ===> Use 'make config' to modify these settings SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/sra-tools XDG_CONFIG_HOME=/construction/biology/sra-tools XDG_CACHE_HOME=/construction/biology/sra-tools/.cache HOME=/construction/biology/sra-tools TMPDIR="/tmp" PATH=/construction/biology/sra-tools/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/sra-tools/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/xports/Templates/config.site lt_cv_sys_max_cmd_len=262144 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- --with-ngs-sdk-prefix=/usr/local --with-ncbi-vdb-sources=/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb --with-xml2-prefix=/usr/local --with-hdf5-prefix=/usr/local CC="cc" CXX="c++" TOOLS="gcc" --with-ncbi-vdb-build=/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd$(uname -r | cut -d - -f 1) --without-debug --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- CPATH="/usr/local/include/libepoll-shim" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/construction/biology/sra-tools XDG_CONFIG_HOME=/construction/biology/sra-tools XDG_CACHE_HOME=/construction/biology/sra-tools/.cache HOME=/construction/biology/sra-tools TMPDIR="/tmp" PATH=/construction/biology/sra-tools/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/sra-tools/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/os/sun -I/construction/biology/sra-tools/sra-tools-2.11.0/lib -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/os/sun -I/construction/biology/sra-tools/sra-tools-2.11.0/lib -O2 -isystem /usr/local/include -fno-strict-aliasing -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/os/sun -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- CCNAME=cc CXXNAME=c++ PKGCFLAGS="-pipe -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/os/sun -I/construction/biology/sra-tools/sra-tools-2.11.0/lib -O2 -isystem /usr/local/include -fno-strict-aliasing " INST_ETCDIR=/construction/biology/sra-tools/stage/usr/local/etc OS=bsd TOOLS=gcc OPT="" DESTDIR=/construction/biology/sra-tools/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.32.1 PERL_VER=5.32 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.32 PROFILE="@comment " DOCSDIR="share/doc/sra-tools" EXAMPLESDIR="share/examples/sra-tools" DATADIR="share/sra-tools" WWWDIR="www/sra-tools" ETCDIR="etc/sra-tools" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sra-tools DOCSDIR=/usr/local/share/doc/sra-tools EXAMPLESDIR=/usr/local/share/examples/sra-tools WWWDIR=/usr/local/www/sra-tools ETCDIR=/usr/local/etc/sra-tools SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/bash-5.2.15.pkg Installing /packages/All/ngs-sdk-3.0.1.pkg Installing /packages/All/gmake-4.3_2.pkg Installing /packages/All/perl5-5.32.1_3.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/hdf5-1.12.2_2,1.pkg Installing /packages/All/libepoll-shim-0.0.20230411.pkg UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:22 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> sra-tools-2.11.0_4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> sra-tools-2.11.0_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by sra-tools-2.11.0_4 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> sra-tools-2.11.0_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by sra-tools-2.11.0_4 for building => SHA256 Checksum OK for ncbi-sra-tools-2.11.0_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ncbi-vdb-2.11.0_GH0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> sra-tools-2.11.0_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by sra-tools-2.11.0_4 for building ===> Extracting for sra-tools-2.11.0_4 ===> sra-tools-2.11.0_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by sra-tools-2.11.0_4 for building => SHA256 Checksum OK for ncbi-sra-tools-2.11.0_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ngs-2.11.0_GH0.tar.gz. => SHA256 Checksum OK for ncbi-ncbi-vdb-2.11.0_GH0.tar.gz. Extracted Memory Use: 115.12M SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for sra-tools-2.11.0_4 ===> Applying ports patches for sra-tools-2.11.0_4 from /xports/biology/sra-tools/files /bin/rm -f -f /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd/endian.h /usr/bin/env WRKSRC=/construction/biology/sra-tools/sra-tools-2.11.0 REWARNFILE=/construction/biology/sra-tools/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e 's@freebsd@dragonfly@g' -e "/TOOLS =/s@'clang'@'gcc'@g" /construction/biology/sra-tools/sra-tools-2.11.0/setup/konfigure.perl /construction/biology/sra-tools/sra-tools-2.11.0/*/setup/konfigure.perl /usr/bin/env WRKSRC=/construction/biology/sra-tools/sra-tools-2.11.0 REWARNFILE=/construction/biology/sra-tools/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e 's@FreeBSD@DragonFly@g' /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/build/Makefile.shell /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/test/klib/printf-test.c /usr/bin/env WRKSRC=/construction/biology/sra-tools/sra-tools-2.11.0 REWARNFILE=/construction/biology/sra-tools/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e 's,AESNI_SUPPORTED=$.*,AESNI_SUPPORTED=false \\,g' /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/Makefile /usr/bin/env WRKSRC=/construction/biology/sra-tools/sra-tools-2.11.0 REWARNFILE=/construction/biology/sra-tools/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e 's@FreeBSD@DragonFly@g' /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/cmdline.cpp /usr/bin/env WRKSRC=/construction/biology/sra-tools/sra-tools-2.11.0 REWARNFILE=/construction/biology/sra-tools/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e "s@-lmagic@-lmagic -llzma@g" /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/Makefile /usr/bin/env WRKSRC=/construction/biology/sra-tools/sra-tools-2.11.0 REWARNFILE=/construction/biology/sra-tools/reinplace_warnings.txt /bin/sh /xports/Mk/Scripts/sed_checked.sh -e "s@-smagic@-smagic -slzma@g" /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/Makefile SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> sra-tools-2.11.0_4 depends on executable: bash - found ===> sra-tools-2.11.0_4 depends on file: /usr/local/lib/libngs-c++.a - found ===> sra-tools-2.11.0_4 depends on package: gmake>=4.3 - found ===> sra-tools-2.11.0_4 depends on package: perl5>=5.32.r0<5.33 - found ===> sra-tools-2.11.0_4 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> sra-tools-2.11.0_4 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> sra-tools-2.11.0_4 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> sra-tools-2.11.0_4 depends on shared library: libepoll-shim.so - found (/usr/local/lib/libepoll-shim.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> sra-tools-2.11.0_4 depends on executable: bash - found ===> sra-tools-2.11.0_4 depends on file: /usr/local/lib/libngs-c++.a - found ===> sra-tools-2.11.0_4 depends on package: gmake>=4.3 - found ===> sra-tools-2.11.0_4 depends on package: perl5>=5.32.r0<5.33 - found ===> sra-tools-2.11.0_4 depends on file: /usr/local/bin/ccache - found ===> sra-tools-2.11.0_4 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> sra-tools-2.11.0_4 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> sra-tools-2.11.0_4 depends on shared library: libepoll-shim.so - found (/usr/local/lib/libepoll-shim.so) ===> Configuring for sra-tools-2.11.0_4 Configuring NCBI-VDB package checking system type... DragonFly checking machine architecture... x86_64 checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... DragonFly (DragonFly) is supported checking for supported tool chain... gcc tool chain is supported checking for c++... yes checking for Python 3... skipped checking whether c++ accepts -static-libstdc++... yes checking for fuse library... no checking for hdf5 library... yes checking for magic library... yes checking for xml2 library... yes checking for ngs-sdk package... includes... ../ngs/ngs-sdk configure: ngs-sdk package: found interface files but not libraries. includes: /construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk checking for ngs-java package... configure: optional ngs-java package not found: skipped. configure: creating 'build/ld.linux.exe_cmd.sh' configure: creating 'build/Makefile.config.DragonFly.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb build output path: /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel includedir: /usr/local/include bindir: /usr/local/bin libdir: /usr/local/lib CC = cc -c CPP = c++ configured with: "'--with-xml2-prefix=/usr/local' '--with-hdf5-prefix=/usr/local' '--prefix=/usr/local' '--build=amd64-portbld-freebsd6.5' 'CC=cc' 'CXX=c++' 'TOOLS=gcc'" gmake[2]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb' gmake[3]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls' gmake[6]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ext/mbedtls' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o aes.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/aes.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=aes -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o aesni.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/aesni.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=aesni -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o arc4.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/arc4.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=arc4 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o aria.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/aria.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=aria -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bignum.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bignum.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=bignum -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o camellia.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/camellia.c 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o chacha20.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/chacha20.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=chacha20 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o chachapoly.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/chachapoly.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=chachapoly -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cipher_wrap.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/cipher_wrap.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=cipher_wrap -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cmac.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/cmac.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=cmac -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ctr_drbg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ctr_drbg.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ctr_drbg -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o des.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/des.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=des -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dhm.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/dhm.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=dhm -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ecdh.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ecdh.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ecdh -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ecdsa.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ecdsa.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ecdsa -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ecjpake.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ecjpake.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ecjpake -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ecp.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ecp.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ecp -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ecp_curves.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ecp_curves.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ecp_curves -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o entropy.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/entropy.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=entropy -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o entropy_poll.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/entropy_poll.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=entropy_poll -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o error.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/error.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=error -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o gcm.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/gcm.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=gcm -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o havege.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/havege.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=havege -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o hkdf.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/hkdf.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=hkdf -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o hmac_drbg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/hmac_drbg.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=hmac_drbg -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o md.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/md.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=md -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o md2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/md2.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=md2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o md4.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/md4.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=md4 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o md5.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/md5.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=md5 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o memory_buffer_alloc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/memory_buffer_alloc.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=memory_buffer_alloc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o nist_kw.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/nist_kw.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=nist_kw -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o oid.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/oid.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=oid -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o padlock.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/padlock.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=padlock -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pem.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pem.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pem -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pk.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pk.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pk -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pk_wrap.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pk_wrap.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pk_wrap -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pkcs12.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pkcs12.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pkcs12 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pkcs5.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pkcs5.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pkcs5 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pkparse.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pkparse.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pkparse -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pkwrite.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pkwrite.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pkwrite -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o platform.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/platform.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=platform -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o platform_util.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/platform_util.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=platform_util -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o poly1305.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/poly1305.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=poly1305 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o psa_crypto.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/psa_crypto.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=psa_crypto -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o psa_crypto_driver_wrappers.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/psa_crypto_driver_wrappers.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=psa_crypto_driver_wrappers -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o psa_crypto_se.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/psa_crypto_se.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=psa_crypto_se -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o psa_crypto_slot_management.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/psa_crypto_slot_management.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=psa_crypto_slot_management -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o psa_crypto_storage.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/psa_crypto_storage.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=psa_crypto_storage -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o psa_its_file.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/psa_its_file.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=psa_its_file -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ripemd160.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ripemd160.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ripemd160 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rsa.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/rsa.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=rsa -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rsa_internal.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/rsa_internal.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=rsa_internal -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sha1.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/sha1.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=sha1 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sha256.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/sha256.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=sha256 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sha512.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/sha512.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=sha512 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o threading.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/threading.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=threading -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o timing.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/timing.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=timing -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o version.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/version.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=version -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o version_features.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/version_features.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=version_features -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o xtea.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/xtea.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=xtea -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o certs.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/certs.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=certs -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pkcs11.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/pkcs11.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=pkcs11 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o x509.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/x509.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=x509 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o x509_create.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/x509_create.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=x509_create -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o x509_crl.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/x509_crl.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=x509_crl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o x509_crt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/x509_crt.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=x509_crt -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o x509_csr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/x509_csr.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=x509_csr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o x509write_crt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/x509write_crt.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=x509write_crt -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o x509write_csr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/x509write_csr.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=x509write_csr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o debug.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/debug.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=debug -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o net_sockets.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/net_sockets.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=net_sockets -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_cache.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_cache.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_cache -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_ciphersuites.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_ciphersuites.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_ciphersuites -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_cli.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_cli.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_cli -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_cookie.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_cookie.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_cookie -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_msg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_msg.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_msg -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_srv.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_srv.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_srv -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_ticket.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_ticket.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_ticket -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_tls.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_tls.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_tls -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ssl_tls13_keys.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls/ssl_tls13_keys.c -D__mod_name__=libs/ext/mbedtls -D__file_name__=ssl_tls13_keys -D__file_ext__=c gmake[6]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ext/mbedtls' gmake[6]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ext/mbedtls' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libmbedcrypto.a aes.pic.o aesni.pic.o arc4.pic.o aria.pic.o asn1parse.pic.o asn1write.pic.o base64.pic.o bignum.pic.o blowfish.pic.o camellia.pic.o ccm.pic.o chacha20.pic.o chachapoly.pic.o cipher.pic.o cipher_wrap.pic.o cmac.pic.o ctr_drbg.pic.o des.pic.o dhm.pic.o ecdh.pic.o ecdsa.pic.o ecjpake.pic.o ecp.pic.o ecp_curves.pic.o entropy.pic.o entropy_poll.pic.o error.pic.o gcm.pic.o havege.pic.o hkdf.pic.o hmac_drbg.pic.o md.pic.o md2.pic.o md4.pic.o md5.pic.o memory_buffer_alloc.pic.o nist_kw.pic.o oid.pic.o padlock.pic.o pem.pic.o pk.pic.o pk_wrap.pic.o pkcs12.pic.o pkcs5.pic.o pkparse.pic.o pkwrite.pic.o platform.pic.o platform_util.pic.o poly1305.pic.o psa_crypto.pic.o psa_crypto_driver_wrappers.pic.o psa_crypto_se.pic.o psa_crypto_slot_management.pic.o psa_crypto_storage.pic.o psa_its_file.pic.o ripemd160.pic.o rsa.pic.o rsa_internal.pic.o sha1.pic.o sha256.pic.o sha512.pic.o threading.pic.o timing.pic.o version.pic.o version_features.pic.o xtea.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libmbedx509.a certs.pic.o pkcs11.pic.o x509.pic.o x509_create.pic.o x509_crl.pic.o x509_crt.pic.o x509_csr.pic.o x509write_crt.pic.o x509write_csr.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libmbedtls.a debug.pic.o net_sockets.pic.o ssl_cache.pic.o ssl_ciphersuites.pic.o ssl_cli.pic.o ssl_cookie.pic.o ssl_msg.pic.o ssl_srv.pic.o ssl_ticket.pic.o ssl_tls.pic.o ssl_tls13_keys.pic.o gmake[6]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ext/mbedtls' gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext/mbedtls' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ext' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfc' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o refcount.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/refcount.c -D__mod_name__=libs/kfc -D__file_name__=refcount -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tstate.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/tstate.c -D__mod_name__=libs/kfc -D__file_name__=tstate -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysrsrc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix/sysrsrc.c -D__mod_name__=libs/kfc -D__file_name__=sysrsrc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rsrc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/rsrc.c -D__mod_name__=libs/kfc -D__file_name__=rsrc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o vtbl.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/vtbl.c -D__mod_name__=libs/kfc -D__file_name__=vtbl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysctx.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix/sysctx.c -D__mod_name__=libs/kfc -D__file_name__=sysctx -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o except.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/except.c -D__mod_name__=libs/kfc -D__file_name__=except -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o xc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc/xc.c -D__mod_name__=libs/kfc -D__file_name__=xc -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfc' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfc' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkfc.a refcount.pic.o tstate.pic.o sysrsrc.pic.o rsrc.pic.o vtbl.pic.o sysctx.pic.o except.pic.o xc.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfc' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfc' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy' gmake[6]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/klib/judy' cc -c -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/.. -MD -o JudyMalloc.n.64.pic.o -fPIC -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/.. /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/JudyMalloc.c cc -c -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 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JudyDel.w.64.pic.o -fPIC -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/.. -DJUDYL /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/JudyDel.c cc -c -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy/.. -MD -o JudyCascade.w.64.pic.o -fPIC -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy 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/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/token.c -D__mod_name__=libs/klib -D__file_name__=token -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o symtab.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/symtab.c -D__mod_name__=libs/klib -D__file_name__=symtab -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o container.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/container.c -D__mod_name__=libs/klib -D__file_name__=container -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o vector.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/vector.c -D__mod_name__=libs/klib -D__file_name__=vector -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o namelist.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/namelist.c -D__mod_name__=libs/klib -D__file_name__=namelist -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o all-vdb-version.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/all-vdb-version.c -D__mod_name__=libs/klib -D__file_name__=all-vdb-version -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o vector_namelist.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/vector_namelist.c -D__mod_name__=libs/klib -D__file_name__=vector_namelist -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o trie.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/trie.c -D__mod_name__=libs/klib -D__file_name__=trie -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pbstree.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/pbstree.c -D__mod_name__=libs/klib -D__file_name__=pbstree -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pbstree-impl.nopt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/pbstree-impl.c -D__mod_name__=libs/klib -D__file_name__=pbstree-impl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pbstree-impl.swap.nopt.pic.o -fPIC -DSWAP_PERSISTED -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/pbstree-impl.c -D__mod_name__=libs/klib -D__file_name__=pbstree-impl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bstpersist.nopt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bstpersist.c -D__mod_name__=libs/klib -D__file_name__=bstpersist -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ptrie.nopt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/ptrie.c -D__mod_name__=libs/klib -D__file_name__=ptrie -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ptpersist.nopt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/ptpersist.c -D__mod_name__=libs/klib -D__file_name__=ptpersist -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o crc32.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/crc32.c -D__mod_name__=libs/klib -D__file_name__=crc32 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o md5.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/md5.c -D__mod_name__=libs/klib -D__file_name__=md5 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o misc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix/misc.c -D__mod_name__=libs/klib -D__file_name__=misc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o SHA-32bit.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/SHA-32bit.c -D__mod_name__=libs/klib -D__file_name__=SHA-32bit -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o SHA-64bit.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/SHA-64bit.c -D__mod_name__=libs/klib -D__file_name__=SHA-64bit -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o qsort.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/qsort.c -D__mod_name__=libs/klib -D__file_name__=qsort -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ksort.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/ksort.c -D__mod_name__=libs/klib -D__file_name__=ksort -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bsearch.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsearch.c -D__mod_name__=libs/klib -D__file_name__=bsearch -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pack.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/pack.c -D__mod_name__=libs/klib -D__file_name__=pack -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o unpack.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unpack.c -D__mod_name__=libs/klib -D__file_name__=unpack -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o vlen-encode.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/vlen-encode.c -D__mod_name__=libs/klib -D__file_name__=vlen-encode -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o data-buffer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/data-buffer.c -D__mod_name__=libs/klib -D__file_name__=data-buffer -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o refcount.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/refcount.c -D__mod_name__=libs/klib -D__file_name__=refcount -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o printf.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/printf.c -D__mod_name__=libs/klib -D__file_name__=printf -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o status-rc-strings.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/status-rc-strings.c -D__mod_name__=libs/klib -D__file_name__=status-rc-strings -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o status-rc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/status-rc.c -D__mod_name__=libs/klib -D__file_name__=status-rc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syserrcode.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd/syserrcode.c -D__mod_name__=libs/klib -D__file_name__=syserrcode -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syswriter.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix/syswriter.c -D__mod_name__=libs/klib -D__file_name__=syswriter -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o out.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/out.c -D__mod_name__=libs/klib -D__file_name__=out -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o status.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/status.c -D__mod_name__=libs/klib -D__file_name__=status -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o log.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/log.c -D__mod_name__=libs/klib -D__file_name__=log -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rc-idx-tbl.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/rc-idx-tbl.c -D__mod_name__=libs/klib -D__file_name__=rc-idx-tbl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sra-release-version.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/sra-release-version.c -D__mod_name__=libs/klib -D__file_name__=sra-release-version -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o hashtable.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/hashtable.c -D__mod_name__=libs/klib -D__file_name__=hashtable -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o hashfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/hashfile.c -D__mod_name__=libs/klib -D__file_name__=hashfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o btree.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/btree.c -D__mod_name__=libs/klib -D__file_name__=btree -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o json.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/json.c -D__mod_name__=libs/klib -D__file_name__=json -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o json-grammar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/json-grammar.c -D__mod_name__=libs/klib -D__file_name__=json-grammar -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o json-lex.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/json-lex.c -D__mod_name__=libs/klib -D__file_name__=json-lex -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o base64.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/base64.c -D__mod_name__=libs/klib -D__file_name__=base64 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o guid.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/guid.c -D__mod_name__=libs/klib -D__file_name__=guid -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/klib' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy' gmake[6]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/klib/judy' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libjudy.a JudyMalloc.n.64.pic.o JudySL.n.64.pic.o JudyHS.n.64.pic.o JudyGet.w.64.pic.o JudyIns.w.64.pic.o JudyInsArray.w.64.pic.o JudyDel.w.64.pic.o JudyCascade.w.64.pic.o JudyCount.w.64.pic.o JudyCreateBranch.w.64.pic.o JudyDecascade.w.64.pic.o JudyFirst.w.64.pic.o JudyFreeArray.w.64.pic.o JudyInsertBranch.w.64.pic.o JudyMallocIF.w.64.pic.o JudyMemActive.w.64.pic.o JudyMemUsed.w.64.pic.o JudyNext.w.64.pic.o JudyNextEmpty.w.64.pic.o JudyPrev.w.64.pic.o JudyPrevEmpty.w.64.pic.o JudyByCountWithDefs.w.64.pic.o j__udyGet.w.64.pic.o _JudyLTables.w.64.pic.o JudyGet.b.64.pic.o JudyIns.b.64.pic.o JudyInsArray.b.64.pic.o JudyDel.b.64.pic.o JudyCascade.b.64.pic.o JudyCount.b.64.pic.o JudyCreateBranch.b.64.pic.o JudyDecascade.b.64.pic.o JudyFirst.b.64.pic.o JudyFreeArray.b.64.pic.o JudyInsertBranch.b.64.pic.o JudyMallocIF.b.64.pic.o JudyMemActive.b.64.pic.o JudyMemUsed.b.64.pic.o JudyNext.b.64.pic.o JudyNextEmpty.b.64.pic.o JudyPrev.b.64.pic.o JudyPrevEmpty.b.64.pic.o JudyByCountWithDefs.b.64.pic.o j__udyGet.b.64.pic.o _Judy1Tables.b.64.pic.o gmake[6]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/klib/judy' gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib/judy' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/klib' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libklib.a text.pic.o time.pic.o utf8.pic.o iso8859.pic.o iso8859-1.pic.o cp1252.pic.o token.pic.o symtab.pic.o container.pic.o vector.pic.o namelist.pic.o all-vdb-version.pic.o vector_namelist.pic.o trie.pic.o pbstree.pic.o pbstree-impl.nopt.pic.o pbstree-impl.swap.nopt.pic.o bstpersist.nopt.pic.o ptrie.nopt.pic.o ptpersist.nopt.pic.o crc32.pic.o md5.pic.o misc.pic.o SHA-32bit.pic.o SHA-64bit.pic.o qsort.pic.o ksort.pic.o bsearch.pic.o pack.pic.o unpack.pic.o vlen-encode.pic.o data-buffer.pic.o refcount.pic.o printf.pic.o status-rc-strings.pic.o status-rc.pic.o syserrcode.pic.o syswriter.pic.o out.pic.o status.pic.o log.pic.o writer.pic.o syslog.pic.o systime.pic.o rc-tbl.pic.o rc-idx-tbl.pic.o judy-vector.pic.o report-klib.pic.o num-gen.pic.o progressbar.pic.o sra-release-version.pic.o hashtable.pic.o hashfile.pic.o btree.pic.o json.pic.o json-grammar.pic.o json-lex.pic.o base64.pic.o guid.pic.o ld-tmp/judy-JudyMalloc.n.64.pic.o ld-tmp/judy-JudySL.n.64.pic.o ld-tmp/judy-JudyHS.n.64.pic.o ld-tmp/judy-JudyGet.w.64.pic.o ld-tmp/judy-JudyIns.w.64.pic.o ld-tmp/judy-JudyInsArray.w.64.pic.o ld-tmp/judy-JudyDel.w.64.pic.o ld-tmp/judy-JudyCascade.w.64.pic.o ld-tmp/judy-JudyCount.w.64.pic.o ld-tmp/judy-JudyCreateBranch.w.64.pic.o ld-tmp/judy-JudyDecascade.w.64.pic.o ld-tmp/judy-JudyFirst.w.64.pic.o ld-tmp/judy-JudyFreeArray.w.64.pic.o ld-tmp/judy-JudyInsertBranch.w.64.pic.o ld-tmp/judy-JudyMallocIF.w.64.pic.o ld-tmp/judy-JudyMemActive.w.64.pic.o ld-tmp/judy-JudyMemUsed.w.64.pic.o ld-tmp/judy-JudyNext.w.64.pic.o ld-tmp/judy-JudyNextEmpty.w.64.pic.o ld-tmp/judy-JudyPrev.w.64.pic.o ld-tmp/judy-JudyPrevEmpty.w.64.pic.o ld-tmp/judy-JudyByCountWithDefs.w.64.pic.o ld-tmp/judy-j__udyGet.w.64.pic.o ld-tmp/judy-_JudyLTables.w.64.pic.o ld-tmp/judy-JudyGet.b.64.pic.o ld-tmp/judy-JudyIns.b.64.pic.o ld-tmp/judy-JudyInsArray.b.64.pic.o ld-tmp/judy-JudyDel.b.64.pic.o ld-tmp/judy-JudyCascade.b.64.pic.o ld-tmp/judy-JudyCount.b.64.pic.o ld-tmp/judy-JudyCreateBranch.b.64.pic.o ld-tmp/judy-JudyDecascade.b.64.pic.o ld-tmp/judy-JudyFirst.b.64.pic.o ld-tmp/judy-JudyFreeArray.b.64.pic.o ld-tmp/judy-JudyInsertBranch.b.64.pic.o ld-tmp/judy-JudyMallocIF.b.64.pic.o ld-tmp/judy-JudyMemActive.b.64.pic.o ld-tmp/judy-JudyMemUsed.b.64.pic.o ld-tmp/judy-JudyNext.b.64.pic.o ld-tmp/judy-JudyNextEmpty.b.64.pic.o ld-tmp/judy-JudyPrev.b.64.pic.o ld-tmp/judy-JudyPrevEmpty.b.64.pic.o ld-tmp/judy-JudyByCountWithDefs.b.64.pic.o ld-tmp/judy-j__udyGet.b.64.pic.o ld-tmp/judy-_Judy1Tables.b.64.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/klib' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/klib' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kproc' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o task.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/task.c -D__mod_name__=libs/kproc -D__file_name__=task -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysmgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd/sysmgr.c -D__mod_name__=libs/kproc -D__file_name__=sysmgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o procmgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/procmgr.c -D__mod_name__=libs/kproc -D__file_name__=procmgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o systimeout.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix/systimeout.c -D__mod_name__=libs/kproc -D__file_name__=systimeout -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syslock.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd/syslock.c -D__mod_name__=libs/kproc -D__file_name__=syslock -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o systhread.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix/systhread.c -D__mod_name__=libs/kproc -D__file_name__=systhread -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syscond.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix/syscond.c -D__mod_name__=libs/kproc -D__file_name__=syscond -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sem.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/sem.c -D__mod_name__=libs/kproc -D__file_name__=sem -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sttimeout.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/sttimeout.c -D__mod_name__=libs/kproc -D__file_name__=sttimeout -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stlock.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/stlock.c -D__mod_name__=libs/kproc -D__file_name__=stlock -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stcond.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/stcond.c -D__mod_name__=libs/kproc -D__file_name__=stcond -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stsem.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/stsem.c -D__mod_name__=libs/kproc -D__file_name__=stsem -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stthread.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/stthread.c -D__mod_name__=libs/kproc -D__file_name__=stthread -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stbarrier.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/stbarrier.c -D__mod_name__=libs/kproc -D__file_name__=stbarrier -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o queue.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc/queue.c -D__mod_name__=libs/kproc -D__file_name__=queue -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kproc' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kproc' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libksproc.a task.pic.o sysmgr.pic.o procmgr.pic.o sttimeout.pic.o stlock.pic.o stcond.pic.o stsem.pic.o stthread.pic.o stbarrier.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkproc.a task.pic.o sysmgr.pic.o procmgr.pic.o systimeout.pic.o syslock.pic.o systhread.pic.o syscond.pic.o sem.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkq.a queue.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kproc' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kproc' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfs' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o mmap.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/mmap.c -D__mod_name__=libs/kfs -D__file_name__=mmap -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o directory.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/directory.c -D__mod_name__=libs/kfs -D__file_name__=directory -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o arrayfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/arrayfile.c -D__mod_name__=libs/kfs -D__file_name__=arrayfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o file.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/file.c -D__mod_name__=libs/kfs -D__file_name__=file -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o chunk-reader.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/chunk-reader.c -D__mod_name__=libs/kfs -D__file_name__=chunk-reader -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysdir.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix/sysdir.c -D__mod_name__=libs/kfs -D__file_name__=sysdir -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix/sysfile.c -D__mod_name__=libs/kfs -D__file_name__=sysfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysmmap.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix/sysmmap.c -D__mod_name__=libs/kfs -D__file_name__=sysmmap -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs 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sysdll.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix/sysdll.c -D__mod_name__=libs/kfs -D__file_name__=sysdll -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o md5.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/md5.c -D__mod_name__=libs/kfs -D__file_name__=md5 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tocfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/tocfile.c -D__mod_name__=libs/kfs -D__file_name__=tocfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd 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cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/tar.c -D__mod_name__=libs/kfs -D__file_name__=tar -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o teefile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/teefile.c -D__mod_name__=libs/kfs -D__file_name__=teefile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o buffile.pic.o -fPIC -D_LIBRARY 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o buffile-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/buffile-read.c -D__mod_name__=libs/kfs -D__file_name__=buffile-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o buffile-write.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/buffile-write.c -D__mod_name__=libs/kfs -D__file_name__=buffile-write -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o subfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/subfile.c -D__mod_name__=libs/kfs -D__file_name__=subfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o nullfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/nullfile.c -D__mod_name__=libs/kfs -D__file_name__=nullfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o countfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/countfile.c -D__mod_name__=libs/kfs -D__file_name__=countfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dir_test.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/dir_test.c -D__mod_name__=libs/kfs -D__file_name__=dir_test -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pagefile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/pagefile.c -D__mod_name__=libs/kfs -D__file_name__=pagefile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pmem.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/pmem.c -D__mod_name__=libs/kfs -D__file_name__=pmem -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o readheadfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/readheadfile.c -D__mod_name__=libs/kfs -D__file_name__=readheadfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o extendable-ramfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/extendable-ramfile.c -D__mod_name__=libs/kfs -D__file_name__=extendable-ramfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o lockfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/lockfile.c -D__mod_name__=libs/kfs -D__file_name__=lockfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o remove-file-task.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/remove-file-task.c -D__mod_name__=libs/kfs -D__file_name__=remove-file-task -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cacheteefile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/cacheteefile.c -D__mod_name__=libs/kfs -D__file_name__=cacheteefile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cacheteefile2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/cacheteefile2.c -D__mod_name__=libs/kfs -D__file_name__=cacheteefile2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cacheteefile3.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/cacheteefile3.c -D__mod_name__=libs/kfs -D__file_name__=cacheteefile3 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rrcachedfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/rrcachedfile.c -D__mod_name__=libs/kfs -D__file_name__=rrcachedfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o recorder.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/recorder.c -D__mod_name__=libs/kfs -D__file_name__=recorder -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o logfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/logfile.c -D__mod_name__=libs/kfs -D__file_name__=logfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o callback_file.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/callback_file.c -D__mod_name__=libs/kfs -D__file_name__=callback_file -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o poolpages.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/poolpages.c -D__mod_name__=libs/kfs -D__file_name__=poolpages -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o lru_cache.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/lru_cache.c -D__mod_name__=libs/kfs -D__file_name__=lru_cache -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o from_to_namelist.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/from_to_namelist.c -D__mod_name__=libs/kfs -D__file_name__=from_to_namelist -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o limitfile.pic.o -fPIC -D_LIBRARY 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o appendfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/appendfile.c -D__mod_name__=libs/kfs -D__file_name__=appendfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o mmap.nommap.pic.o -fPIC -DFORCE_MALLOC_MMAP -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/mmap.c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o fileformat.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/fileformat.c -D__mod_name__=libs/kfs -D__file_name__=fileformat -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ffext.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/ffext.c -D__mod_name__=libs/kfs -D__file_name__=ffext -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ffkey.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/ffkey.c -D__mod_name__=libs/kfs -D__file_name__=ffkey -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ffmagic.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs/ffmagic.c -D__mod_name__=libs/kfs -D__file_name__=ffmagic -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfs' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfs' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkfs.a mmap.pic.o directory.pic.o arrayfile.pic.o file.pic.o chunk-reader.pic.o sysdir.pic.o sysfile.pic.o sysmmap.pic.o syslockfile.pic.o sysdll.pic.o gzip.pic.o bzip.pic.o md5.pic.o crc32.pic.o arc.pic.o toc.pic.o tocentry.pic.o tocdir.pic.o tocfile.pic.o sra.pic.o tar.pic.o teefile.pic.o buffile.pic.o buffile-read.pic.o buffile-write.pic.o subfile.pic.o nullfile.pic.o countfile.pic.o dir_test.pic.o pagefile.pic.o pmem.pic.o readheadfile.pic.o ramfile.pic.o extendable-ramfile.pic.o quickmount.pic.o report.pic.o lockfile.pic.o remove-file-task.pic.o cacheteefile.pic.o cacheteefile2.pic.o cacheteefile3.pic.o rrcachedfile.pic.o recorder.pic.o logfile.pic.o callback_file.pic.o poolpages.pic.o lru_cache.pic.o from_to_namelist.pic.o limitfile.pic.o appendfile.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkfs-nommap.a mmap.nommap.pic.o directory.pic.o arrayfile.pic.o file.pic.o chunk-reader.pic.o sysdir.pic.o sysfile.pic.o sysmmap.pic.o syslockfile.pic.o sysdll.pic.o gzip.pic.o bzip.pic.o md5.pic.o crc32.pic.o arc.pic.o toc.pic.o tocentry.pic.o tocdir.pic.o tocfile.pic.o sra.pic.o tar.pic.o teefile.pic.o buffile.pic.o buffile-read.pic.o buffile-write.pic.o subfile.pic.o nullfile.pic.o countfile.pic.o dir_test.pic.o pagefile.pic.o pmem.pic.o readheadfile.pic.o ramfile.pic.o extendable-ramfile.pic.o quickmount.pic.o report.pic.o lockfile.pic.o remove-file-task.pic.o cacheteefile.pic.o cacheteefile2.pic.o cacheteefile3.pic.o rrcachedfile.pic.o recorder.pic.o logfile.pic.o callback_file.pic.o poolpages.pic.o lru_cache.pic.o from_to_namelist.pic.o limitfile.pic.o appendfile.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkff.a fileformat.pic.o ffext.pic.o ffkey.pic.o ffmagic.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfs' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfs' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/cloud' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cloud-mgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/cloud-mgr.c -D__mod_name__=libs/cloud -D__file_name__=cloud-mgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o aws.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/aws.c -D__mod_name__=libs/cloud -D__file_name__=aws -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o aws-auth.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/aws-auth.c -D__mod_name__=libs/cloud -D__file_name__=aws-auth -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o gcp-authentication.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/gcp-authentication.c -D__mod_name__=libs/cloud -D__file_name__=gcp-authentication -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o gcp.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/gcp.c -D__mod_name__=libs/cloud -D__file_name__=gcp -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cloud.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/cloud.c -D__mod_name__=libs/cloud -D__file_name__=cloud -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cloud-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud/cloud-cmn.c -D__mod_name__=libs/cloud -D__file_name__=cloud-cmn -D__file_ext__=c ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libcloud.a cloud-mgr.pic.o aws.pic.o aws-auth.pic.o gcp-authentication.pic.o gcp.pic.o cloud.pic.o cloud-cmn.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/cloud' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/cloud' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kns' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stream-from-buffer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/stream-from-buffer.c -D__mod_name__=libs/kns -D__file_name__=stream-from-buffer -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syssock.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix/syssock.c -D__mod_name__=libs/kns -D__file_name__=syssock -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysstream.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix/sysstream.c -D__mod_name__=libs/kns -D__file_name__=sysstream -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysmgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix/sysmgr.c -D__mod_name__=libs/kns -D__file_name__=sysmgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tls.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/tls.c -D__mod_name__=libs/kns -D__file_name__=tls -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syspoll.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux/syspoll.c -D__mod_name__=libs/kns -D__file_name__=syspoll -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o http-file.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/http-file.c -D__mod_name__=libs/kns -D__file_name__=http-file -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o http-client.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/http-client.c -D__mod_name__=libs/kns -D__file_name__=http-client -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o http-request.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/http-request.c -D__mod_name__=libs/kns -D__file_name__=http-request -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o http-retrier.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/http-retrier.c -D__mod_name__=libs/kns -D__file_name__=http-retrier -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o http.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns/http.c -D__mod_name__=libs/kns -D__file_name__=http -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kns' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kns' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkns.a stream-from-buffer.pic.o kns_manager-ext.pic.o manager.pic.o proxy.pic.o stable-http-file.pic.o buffered-stream.pic.o stream.pic.o stream-from-files.pic.o stream-from-streams.pic.o endpoint.pic.o sysendpoint.pic.o syssock.pic.o sysstream.pic.o sysmgr.pic.o tls.pic.o syspoll.pic.o http-file.pic.o http-client.pic.o http-request.pic.o http-retrier.pic.o http.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kns' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kns' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfg' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o config-lex.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/config-lex.c -D__mod_name__=libs/kfg -D__file_name__=config-lex -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o config-grammar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/config-grammar.c -D__mod_name__=libs/kfg -D__file_name__=config-grammar -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o config.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/config.c -D__mod_name__=libs/kfg -D__file_name__=config -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o config-aws.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/config-aws.c -D__mod_name__=libs/kfg -D__file_name__=config-aws -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o kart.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/kart.c -D__mod_name__=libs/kfg -D__file_name__=kart -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o repository.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/repository.c -D__mod_name__=libs/kfg -D__file_name__=repository -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o properties.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/properties.c -D__mod_name__=libs/kfg -D__file_name__=properties -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ngc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/ngc.c -D__mod_name__=libs/kfg -D__file_name__=ngc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o report-kfg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/report-kfg.c -D__mod_name__=libs/kfg -D__file_name__=report-kfg -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o keystore.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/keystore.c -D__mod_name__=libs/kfg -D__file_name__=keystore -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o docker.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/docker.c -D__mod_name__=libs/kfg -D__file_name__=docker -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfg' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfg' cp /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/default.kfg /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/ncbi/default.kfg cp /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/default.kfg /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/bin/ncbi/default.kfg cp /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/certs.kfg /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/ncbi/certs.kfg cp /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/certs.kfg /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/bin/ncbi/certs.kfg ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkfg.a config-lex.pic.o config-grammar.pic.o config.pic.o config-aws.pic.o kart.pic.o repository.pic.o properties.pic.o ngc.pic.o report-kfg.pic.o keystore.pic.o docker.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kfg' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/krypto' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ciphermgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/ciphermgr.c -D__mod_name__=libs/krypto -D__file_name__=ciphermgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wgaencrypt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/wgaencrypt.c -D__mod_name__=libs/krypto -D__file_name__=wgaencrypt -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o encfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/encfile.c -D__mod_name__=libs/krypto -D__file_name__=encfile -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o encfilev2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/encfilev2.c -D__mod_name__=libs/krypto -D__file_name__=encfilev2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cipher.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/cipher.c -D__mod_name__=libs/krypto -D__file_name__=cipher -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o aes-byte.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/aes-byte.c -D__mod_name__=libs/krypto -D__file_name__=aes-byte -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o key.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/key.c -D__mod_name__=libs/krypto -D__file_name__=key -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rsa-aes-hmac.pic.o -fPIC -D_LIBRARY 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cipher-no-vec.vec.pic.o -fPIC -D_LIBRARY -DUSEVEC /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/cipher-no-vec.c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cipher-no-vec.aes-ni.pic.o -fPIC -D_LIBRARY -DUSEVEC -DUSEVECREG -DUSEAESNI /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/cipher-no-vec.c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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'/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/krypto' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/krypto' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-o aes-ncbi.vecreg.pic.o -fPIC -D_LIBRARY -DUSEVEC -DUSEVECREG -funsafe-math-optimizations -mmmx -msse -msse2 -msse3 -mssse3 -msse4.1 -Wa,-march=generic64+sse4 -Wa,-ahlms=/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/aes-ncbi.vecreg.pic.o.list /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto/aes-ncbi.c ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkrypto.a ciphermgr.pic.o wgaencrypt.pic.o encfile.pic.o encfilev2.pic.o cipher.pic.o aes_core.pic.o aes-byte.pic.o cipher-byte.pic.o key.pic.o reencfile.pic.o rsa-aes-hmac.pic.o cipher-vec.vec.pic.o aes-ncbi.vec.pic.o cipher-vec.vecreg.pic.o aes-ncbi.vecreg.pic.o cipher-no-vec.aes-ni.pic.o no-null-ncbi.pic.o no-null-ncbi.vec.pic.o no-null-ncbi.vecreg.pic.o no-null-ncbi.aes-ni.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/krypto' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/krypto' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vfs' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix 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-DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o jwt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/jwt.c -D__mod_name__=libs/vfs -D__file_name__=jwt -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o names4-response.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/names4-response.c -D__mod_name__=libs/vfs -D__file_name__=names4-response -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o manager.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/manager.c -D__mod_name__=libs/vfs -D__file_name__=manager 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o remote-services.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/remote-services.c -D__mod_name__=libs/vfs -D__file_name__=remote-services -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o resolver.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/resolver.c -D__mod_name__=libs/vfs -D__file_name__=resolver -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o resolver-3.0.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/resolver-3.0.c -D__mod_name__=libs/vfs -D__file_name__=resolver-3.0 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sdl-response.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/sdl-response.c -D__mod_name__=libs/vfs -D__file_name__=sdl-response -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux 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-D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o services-cache.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/services-cache.c -D__mod_name__=libs/vfs -D__file_name__=services-cache -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o SraDesc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/SraDesc.c -D__mod_name__=libs/vfs -D__file_name__=SraDesc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o srv-response.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/srv-response.c -D__mod_name__=libs/vfs -D__file_name__=srv-response -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syspath.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs/unix/syspath.c -D__mod_name__=libs/vfs -D__file_name__=syspath -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vfs' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vfs' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libvfs.a path.pic.o jwt.pic.o names4-response.pic.o manager.pic.o remote-services.pic.o resolver.pic.o resolver-3.0.pic.o sdl-response.pic.o services.pic.o services-cache.pic.o SraDesc.pic.o srv-response.pic.o syspath.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vfs' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vfs' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kapp' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o main.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/main.c -D__mod_name__=libs/kapp -D__file_name__=main -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o args.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/args.c -D__mod_name__=libs/kapp -D__file_name__=args -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o args-conv.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/args-conv.c -D__mod_name__=libs/kapp -D__file_name__=args-conv -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o args-conv-os.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix/args-conv-os.c -D__mod_name__=libs/kapp -D__file_name__=args-conv-os -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tokenizer.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/tokenizer.c -D__mod_name__=libs/kapp -D__file_name__=tokenizer -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sysmain.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix/sysmain.c -D__mod_name__=libs/kapp -D__file_name__=sysmain -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ram.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux/ram.c -D__mod_name__=libs/kapp -D__file_name__=ram -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o log-xml.o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/log-xml.c -D__mod_name__=libs/kapp -D__file_name__=log-xml -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o main-norsrc.o -DNO_KRSRC=1 /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/main.c -D__mod_name__=libs/kapp -D__file_name__= -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o progressbar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/progressbar.c -D__mod_name__=libs/kapp -D__file_name__=progressbar -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o loader-file.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/loader-file.c -D__mod_name__=libs/kapp -D__file_name__=loader-file -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o loader-meta.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/loader-meta.c -D__mod_name__=libs/kapp -D__file_name__=loader-meta -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o queue-file.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp/queue-file.c -D__mod_name__=libs/kapp -D__file_name__=queue-file -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kapp' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kapp' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkapp.a main.o args.o args-conv.o args-conv-os.o tokenizer.o sysmain.o ram.o log-xml.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkapp-norsrc.a main-norsrc.o args.o args-conv.o args-conv-os.o tokenizer.o sysmain.o ram.o log-xml.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libload.a progressbar.pic.o loader-file.pic.o loader-meta.pic.o queue-file.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kapp' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kapp' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kdb' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o btree.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/btree.c -D__mod_name__=libs/kdb -D__file_name__=btree -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rowset.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/rowset.c -D__mod_name__=libs/kdb -D__file_name__=rowset -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rowset-simple.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/rowset-simple.c -D__mod_name__=libs/kdb -D__file_name__=rowset-simple -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dbmgr-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/dbmgr-cmn.c -D__mod_name__=libs/kdb -D__file_name__=dbmgr-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o kdb.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/kdb.c -D__mod_name__=libs/kdb -D__file_name__=kdb -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dbmgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/dbmgr.c -D__mod_name__=libs/kdb -D__file_name__=dbmgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dbcc-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/dbcc-cmn.c -D__mod_name__=libs/kdb -D__file_name__=dbcc-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o database.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/database.c -D__mod_name__=libs/kdb -D__file_name__=database -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o column.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/column.c -D__mod_name__=libs/kdb -D__file_name__=column -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o colidx1.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/colidx1.c -D__mod_name__=libs/kdb -D__file_name__=colidx1 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o idxblk.pic.o -fPIC -D_LIBRARY 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o meta.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/meta.c -D__mod_name__=libs/kdb -D__file_name__=meta -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o index.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/index.c -D__mod_name__=libs/kdb -D__file_name__=index -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o idstats.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/idstats.c -D__mod_name__=libs/kdb -D__file_name__=idstats -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o trieidx-v1.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/trieidx-v1.c -D__mod_name__=libs/kdb -D__file_name__=trieidx-v1 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o trieval-v1.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/trieval-v1.c -D__mod_name__=libs/kdb -D__file_name__=trieval-v1 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ptrieval-v1.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/ptrieval-v1.c -D__mod_name__=libs/kdb -D__file_name__=ptrieval-v1 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o trieidx-v2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/trieidx-v2.c -D__mod_name__=libs/kdb -D__file_name__=trieidx-v2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o trieval-v2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/trieval-v2.c -D__mod_name__=libs/kdb -D__file_name__=trieval-v2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ptrieval-v2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/ptrieval-v2.c -D__mod_name__=libs/kdb -D__file_name__=ptrieval-v2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o u64idx-v3.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/u64idx-v3.c -D__mod_name__=libs/kdb -D__file_name__=u64idx-v3 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wkdb.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wkdb.c -D__mod_name__=libs/kdb -D__file_name__=wkdb -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wdbmgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wdbmgr.c -D__mod_name__=libs/kdb -D__file_name__=wdbmgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wdatabase.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wdatabase.c -D__mod_name__=libs/kdb -D__file_name__=wdatabase -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wtable.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wtable.c -D__mod_name__=libs/kdb -D__file_name__=wtable -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcolumn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wcolumn.c -D__mod_name__=libs/kdb -D__file_name__=wcolumn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcoldata.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wcoldata.c -D__mod_name__=libs/kdb -D__file_name__=wcoldata -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcolidx.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wcolidx.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcolidx0.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wcolidx0.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx0 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcolidx1.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wcolidx1.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx1 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcolidx2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wcolidx2.c -D__mod_name__=libs/kdb -D__file_name__=wcolidx2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o widxblk.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/widxblk.c -D__mod_name__=libs/kdb -D__file_name__=widxblk -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wmeta.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wmeta.c -D__mod_name__=libs/kdb -D__file_name__=wmeta -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o windex.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/windex.c -D__mod_name__=libs/kdb -D__file_name__=windex -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wtrieidx-v1.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wtrieidx-v1.c -D__mod_name__=libs/kdb -D__file_name__=wtrieidx-v1 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wtrieidx-v2.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wtrieidx-v2.c -D__mod_name__=libs/kdb -D__file_name__=wtrieidx-v2 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -DUSE_BSTREE_IN_COLUMN_IDX1 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wu64idx-v3.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb/wu64idx-v3.c -D__mod_name__=libs/kdb -D__file_name__=wu64idx-v3 -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kdb' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kdb' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libkdb.a btree.pic.o rowset.pic.o rowset-simple.pic.o dbmgr-cmn.pic.o kdb.pic.o dbmgr.pic.o dbcc-cmn.pic.o database.pic.o database-cc.pic.o table.pic.o table-cc.pic.o column.pic.o column-cc.pic.o coldata.pic.o colidx.pic.o colidx0.pic.o colidx1.pic.o colidx2.pic.o idxblk.pic.o meta.pic.o index.pic.o idstats.pic.o trieidx-v1.pic.o trieval-v1.pic.o ptrieval-v1.pic.o trieidx-v2.pic.o trieval-v2.pic.o ptrieval-v2.pic.o u64idx-v3.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwkdb.a btree.pic.o rowset.pic.o rowset-simple.pic.o dbmgr-cmn.pic.o wkdb.pic.o wdbmgr.pic.o wdatabase.pic.o wtable.pic.o wcolumn.pic.o wcoldata.pic.o wcolidx.pic.o wcolidx0.pic.o wcolidx1.pic.o wcolidx2.pic.o idxblk.pic.o widxblk.pic.o wmeta.pic.o windex.pic.o wtrieidx-v1.pic.o wtrieidx-v2.pic.o wu64idx-v3.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/kdb' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kdb' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vdb' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dbmgr-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/dbmgr-cmn.c -D__mod_name__=libs/vdb -D__file_name__=dbmgr-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o schema-tok.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/schema-tok.c -D__mod_name__=libs/vdb -D__file_name__=schema-tok -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o schema-parse.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/schema-parse.c -D__mod_name__=libs/vdb -D__file_name__=schema-parse -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o schema-type.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/schema-type.c -D__mod_name__=libs/vdb -D__file_name__=schema-type -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o schema-func.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/schema-func.c -D__mod_name__=libs/vdb -D__file_name__=schema-func -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o schema-prod.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/schema-prod.c -D__mod_name__=libs/vdb -D__file_name__=schema-prod -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o schema-expr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/schema-expr.c -D__mod_name__=libs/vdb -D__file_name__=schema-expr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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database-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/database-cmn.c -D__mod_name__=libs/vdb -D__file_name__=database-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o row-len.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/row-len.c -D__mod_name__=libs/vdb -D__file_name__=row-len -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cast.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/cast.c -D__mod_name__=libs/vdb -D__file_name__=cast -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o range-validate.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/range-validate.c -D__mod_name__=libs/vdb -D__file_name__=range-validate -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o parameter-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/parameter-read.c -D__mod_name__=libs/vdb -D__file_name__=parameter-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o redimension.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/redimension.c -D__mod_name__=libs/vdb -D__file_name__=redimension -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o index_project.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/index_project.c -D__mod_name__=libs/vdb -D__file_name__=index_project -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o index_lookup.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/index_lookup.c -D__mod_name__=libs/vdb -D__file_name__=index_lookup -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o transpose.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/transpose.c -D__mod_name__=libs/vdb -D__file_name__=transpose -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o report-vdb.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/report-vdb.c -D__mod_name__=libs/vdb -D__file_name__=report-vdb -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux 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-D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o view.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/view.c -D__mod_name__=libs/vdb -D__file_name__=view -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cursor-view.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/cursor-view.c -D__mod_name__=libs/vdb -D__file_name__=cursor-view -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o database.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/database.c -D__mod_name__=libs/vdb -D__file_name__=database -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wlinker.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/wlinker.c -D__mod_name__=libs/vdb -D__file_name__=wlinker -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wdatabase.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/wdatabase.c -D__mod_name__=libs/vdb -D__file_name__=wdatabase -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wtable.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/wtable.c -D__mod_name__=libs/vdb -D__file_name__=wtable -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcursor.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/wcursor.c -D__mod_name__=libs/vdb -D__file_name__=wcursor -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wcolumn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/wcolumn.c -D__mod_name__=libs/vdb -D__file_name__=wcolumn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wprod.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/wprod.c -D__mod_name__=libs/vdb -D__file_name__=wprod -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wphys.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/wphys.c -D__mod_name__=libs/vdb -D__file_name__=wphys -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o meta-write.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/meta-write.c -D__mod_name__=libs/vdb -D__file_name__=meta-write -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o meta-attr-write.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/meta-attr-write.c -D__mod_name__=libs/vdb -D__file_name__=meta-attr-write -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o meta-append.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/meta-append.c -D__mod_name__=libs/vdb -D__file_name__=meta-append -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o index_insert.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb/index_insert.c -D__mod_name__=libs/vdb -D__file_name__=index_insert -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vdb' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vdb' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libvdb.a dbmgr-cmn.pic.o schema-tok.pic.o schema-parse.pic.o schema-type.pic.o schema-func.pic.o schema-prod.pic.o schema-expr.pic.o schema-eval.pic.o schema-tbl.pic.o schema-view.pic.o schema-db.pic.o schema-dump.pic.o schema-int.pic.o schema.pic.o linker-int.pic.o linker-cmn.pic.o database-cmn.pic.o database-depend.pic.o database-load.pic.o table-cmn.pic.o table-load.pic.o cursor-cmn.pic.o column-cmn.pic.o prod-cmn.pic.o prod-expr.pic.o prod-func.pic.o phys-cmn.pic.o phys-load.pic.o blob.pic.o blob-headers.pic.o page-map.pic.o row-id.pic.o row-len.pic.o fixed-row-len.pic.o merge.pic.o split.pic.o compare.pic.o meta-read.pic.o meta-value.pic.o meta-attr-read.pic.o cast.pic.o range-validate.pic.o parameter-read.pic.o redimension.pic.o index_project.pic.o index_lookup.pic.o transpose.pic.o delta_average.pic.o report-vdb.pic.o bytecode.pic.o view.pic.o cursor-view.pic.o cursor-table.pic.o dbmgr.pic.o linker.pic.o database.pic.o table.pic.o cursor.pic.o column.pic.o prod.pic.o phys.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwvdb.a dbmgr-cmn.pic.o schema-tok.pic.o schema-parse.pic.o schema-type.pic.o schema-func.pic.o schema-prod.pic.o schema-expr.pic.o schema-eval.pic.o schema-tbl.pic.o schema-view.pic.o schema-db.pic.o schema-dump.pic.o schema-int.pic.o schema.pic.o linker-int.pic.o linker-cmn.pic.o database-cmn.pic.o database-depend.pic.o database-load.pic.o table-cmn.pic.o table-load.pic.o cursor-cmn.pic.o column-cmn.pic.o prod-cmn.pic.o prod-expr.pic.o prod-func.pic.o phys-cmn.pic.o phys-load.pic.o blob.pic.o blob-headers.pic.o page-map.pic.o row-id.pic.o row-len.pic.o fixed-row-len.pic.o merge.pic.o split.pic.o compare.pic.o meta-read.pic.o meta-value.pic.o meta-attr-read.pic.o cast.pic.o range-validate.pic.o parameter-read.pic.o redimension.pic.o index_project.pic.o index_lookup.pic.o transpose.pic.o delta_average.pic.o report-vdb.pic.o bytecode.pic.o view.pic.o cursor-view.pic.o cursor-table.pic.o wdbmgr.pic.o wlinker.pic.o wdatabase.pic.o wtable.pic.o wcursor.pic.o wcolumn.pic.o wprod.pic.o wphys.pic.o meta-write.pic.o meta-attr-write.pic.o meta-append.pic.o index_insert.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vdb' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vxf' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ceil.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/ceil.c -D__mod_name__=libs/vxf -D__file_name__=ceil -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o clip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/clip.c -D__mod_name__=libs/vxf -D__file_name__=clip 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cut.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/cut.c -D__mod_name__=libs/vxf -D__file_name__=cut -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o echo.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/echo.c -D__mod_name__=libs/vxf -D__file_name__=echo -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o exists.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/exists.c -D__mod_name__=libs/vxf -D__file_name__=exists -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o floor.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/floor.c -D__mod_name__=libs/vxf -D__file_name__=floor -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o paste.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/paste.c -D__mod_name__=libs/vxf -D__file_name__=paste -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o round.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/round.c -D__mod_name__=libs/vxf -D__file_name__=round -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o trunc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/trunc.c -D__mod_name__=libs/vxf -D__file_name__=trunc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o unzip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unzip.c -D__mod_name__=libs/vxf -D__file_name__=unzip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o map.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/map.c -D__mod_name__=libs/vxf -D__file_name__=map -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o funzip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/funzip.c -D__mod_name__=libs/vxf -D__file_name__=funzip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o vec-sum.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/vec-sum.c -D__mod_name__=libs/vxf -D__file_name__=vec-sum -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o min.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/min.c -D__mod_name__=libs/vxf -D__file_name__=min -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o max.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/max.c -D__mod_name__=libs/vxf -D__file_name__=max -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rldecode.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/rldecode.c -D__mod_name__=libs/vxf -D__file_name__=rldecode -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pack.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/pack.c -D__mod_name__=libs/vxf -D__file_name__=pack -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o unpack.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unpack.c -D__mod_name__=libs/vxf -D__file_name__=unpack -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o izip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/izip.c -D__mod_name__=libs/vxf -D__file_name__=izip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o iunzip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/iunzip.c -D__mod_name__=libs/vxf -D__file_name__=iunzip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o diff.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/diff.c -D__mod_name__=libs/vxf -D__file_name__=diff -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sum.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/sum.c -D__mod_name__=libs/vxf -D__file_name__=sum -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bit_or.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bit_or.c -D__mod_name__=libs/vxf -D__file_name__=bit_or -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o trim.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/trim.c -D__mod_name__=libs/vxf -D__file_name__=trim -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o deriv.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/deriv.c -D__mod_name__=libs/vxf -D__file_name__=deriv -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o integral.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/integral.c -D__mod_name__=libs/vxf -D__file_name__=integral -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o integral_0.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/integral_0.c -D__mod_name__=libs/vxf -D__file_name__=integral_0 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o delta.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/delta.c -D__mod_name__=libs/vxf -D__file_name__=delta -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o undelta.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/undelta.c -D__mod_name__=libs/vxf -D__file_name__=undelta -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o add-row-id.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/add-row-id.c -D__mod_name__=libs/vxf -D__file_name__=add-row-id -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o subtract-row-id.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/subtract-row-id.c -D__mod_name__=libs/vxf -D__file_name__=subtract-row-id -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o irzip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/irzip.c -D__mod_name__=libs/vxf -D__file_name__=irzip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rand_4na_2na.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/rand_4na_2na.c -D__mod_name__=libs/vxf -D__file_name__=rand_4na_2na -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o outlier-encoder.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/outlier-encoder.c -D__mod_name__=libs/vxf -D__file_name__=outlier-encoder -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o outlier-decoder.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/outlier-decoder.c -D__mod_name__=libs/vxf -D__file_name__=outlier-decoder -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bunzip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bunzip.c -D__mod_name__=libs/vxf -D__file_name__=bunzip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o simple-sub-select.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/simple-sub-select.c -D__mod_name__=libs/vxf -D__file_name__=simple-sub-select -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o extract_token.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/extract_token.c -D__mod_name__=libs/vxf -D__file_name__=extract_token -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o strtonum.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/strtonum.c -D__mod_name__=libs/vxf -D__file_name__=strtonum -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sprintf.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/sprintf.c -D__mod_name__=libs/vxf -D__file_name__=sprintf -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wgs-tokenize-accession.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/wgs-tokenize-accession.c -D__mod_name__=libs/vxf -D__file_name__=wgs-tokenize-accession -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o lower-case-tech-reads.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/lower-case-tech-reads.c -D__mod_name__=libs/vxf -D__file_name__=lower-case-tech-reads -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o zip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/zip.c -D__mod_name__=libs/vxf -D__file_name__=zip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bzip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bzip.c -D__mod_name__=libs/vxf -D__file_name__=bzip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o fzip.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/fzip.c -D__mod_name__=libs/vxf -D__file_name__=fzip -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rlencode.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/rlencode.c -D__mod_name__=libs/vxf -D__file_name__=rlencode -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o checksum.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf/checksum.c -D__mod_name__=libs/vxf -D__file_name__=checksum -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vxf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vxf' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libvxf.a ceil.pic.o clip.pic.o cut.pic.o echo.pic.o exists.pic.o floor.pic.o paste.pic.o round.pic.o trunc.pic.o unzip.pic.o map.pic.o funzip.pic.o vec-sum.pic.o min.pic.o max.pic.o rldecode.pic.o pack.pic.o unpack.pic.o izip.pic.o iunzip.pic.o diff.pic.o sum.pic.o bit_or.pic.o trim.pic.o deriv.pic.o integral.pic.o integral_0.pic.o delta.pic.o undelta.pic.o add-row-id.pic.o subtract-row-id.pic.o irzip.pic.o rand_4na_2na.pic.o outlier-encoder.pic.o outlier-decoder.pic.o bunzip.pic.o simple-sub-select.pic.o extract_token.pic.o strtonum.pic.o sprintf.pic.o wgs-tokenize-accession.pic.o lower-case-tech-reads.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwvxf.a ceil.pic.o clip.pic.o cut.pic.o echo.pic.o exists.pic.o floor.pic.o paste.pic.o round.pic.o trunc.pic.o unzip.pic.o map.pic.o funzip.pic.o vec-sum.pic.o min.pic.o max.pic.o rldecode.pic.o pack.pic.o unpack.pic.o izip.pic.o iunzip.pic.o diff.pic.o sum.pic.o bit_or.pic.o trim.pic.o deriv.pic.o integral.pic.o integral_0.pic.o delta.pic.o undelta.pic.o add-row-id.pic.o subtract-row-id.pic.o irzip.pic.o rand_4na_2na.pic.o outlier-encoder.pic.o outlier-decoder.pic.o bunzip.pic.o simple-sub-select.pic.o extract_token.pic.o strtonum.pic.o sprintf.pic.o wgs-tokenize-accession.pic.o lower-case-tech-reads.pic.o zip.pic.o bzip.pic.o fzip.pic.o rlencode.pic.o checksum.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vxf' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vxf' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/search' cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o search.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/search.c -D__mod_name__=libs/search -D__file_name__=search -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o fgrep-dumb.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/fgrep-dumb.c -D__mod_name__=libs/search -D__file_name__=fgrep-dumb -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o fgrep-boyermoore.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/fgrep-boyermoore.c -D__mod_name__=libs/search -D__file_name__=fgrep-boyermoore -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o fgrep-aho.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/fgrep-aho.c -D__mod_name__=libs/search -D__file_name__=fgrep-aho -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o agrep-wumanber.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/agrep-wumanber.c -D__mod_name__=libs/search -D__file_name__=agrep-wumanber -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o agrep-myers.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/agrep-myers.c -D__mod_name__=libs/search -D__file_name__=agrep-myers -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o agrep-myersunltd.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/agrep-myersunltd.c -D__mod_name__=libs/search -D__file_name__=agrep-myersunltd -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o agrep-dp.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/agrep-dp.c -D__mod_name__=libs/search -D__file_name__=agrep-dp -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sw-search.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/sw-search.c -D__mod_name__=libs/search -D__file_name__=sw-search -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -msse2 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o nucstrstr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search/nucstrstr.c -D__mod_name__=libs/search -D__file_name__=nucstrstr -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/search' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/search' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libksrch.a search.pic.o fgrep-dumb.pic.o fgrep-boyermoore.pic.o fgrep-aho.pic.o agrep-wumanber.pic.o agrep-myers.pic.o agrep-myersunltd.pic.o agrep-dp.pic.o sw-search.pic.o nucstrstr.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/search' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/search' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sraxf' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o untyped.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/untyped.c -D__mod_name__=libs/sraxf -D__file_name__=untyped -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o v0-decompress-init.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/v0-decompress-init.c -D__mod_name__=libs/sraxf -D__file_name__=v0-decompress-init -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o v0-decompress.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/v0-decompress.c -D__mod_name__=libs/sraxf -D__file_name__=v0-decompress -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o v0-funcs.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/v0-funcs.c -D__mod_name__=libs/sraxf -D__file_name__=v0-funcs -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bio-start.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bio-start.c -D__mod_name__=libs/sraxf -D__file_name__=bio-start -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dynamic-454-read-descriptor.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/dynamic-454-read-descriptor.c -D__mod_name__=libs/sraxf -D__file_name__=dynamic-454-read-descriptor -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o format-spot-name.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/format-spot-name.c -D__mod_name__=libs/sraxf -D__file_name__=format-spot-name -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o extract-name_coord.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/extract-name_coord.c -D__mod_name__=libs/sraxf -D__file_name__=extract-name_coord -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tokenize-spot_name-454.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/tokenize-spot_name-454.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-454 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tokenize-spot_name-illumina.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/tokenize-spot_name-illumina.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-illumina -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tokenize-spot_name-abi.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/tokenize-spot_name-abi.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-abi -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tokenize-spot_name-helicos.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/tokenize-spot_name-helicos.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-helicos -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tokenize-spot_name-ion-torrent.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/tokenize-spot_name-ion-torrent.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-ion-torrent -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tokenize-spot_name-generic-fastq.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/tokenize-spot_name-generic-fastq.c -D__mod_name__=libs/sraxf -D__file_name__=tokenize-spot_name-generic-fastq -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o color-from-dna.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/color-from-dna.c -D__mod_name__=libs/sraxf -D__file_name__=color-from-dna -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dna-from-color.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/dna-from-color.c -D__mod_name__=libs/sraxf -D__file_name__=dna-from-color -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o use-rna-flag.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/use-rna-flag.c -D__mod_name__=libs/sraxf -D__file_name__=use-rna-flag -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o spot-desc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/spot-desc.c -D__mod_name__=libs/sraxf -D__file_name__=spot-desc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o read-desc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/read-desc.c -D__mod_name__=libs/sraxf -D__file_name__=read-desc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rotate.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/rotate.c -D__mod_name__=libs/sraxf -D__file_name__=rotate -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o swap.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/swap.c -D__mod_name__=libs/sraxf -D__file_name__=swap -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o denormalize.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/denormalize.c -D__mod_name__=libs/sraxf -D__file_name__=denormalize -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o normalize.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/normalize.c -D__mod_name__=libs/sraxf -D__file_name__=normalize -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o qual4_decode.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/qual4_decode.c -D__mod_name__=libs/sraxf -D__file_name__=qual4_decode -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o read-seg-from-readn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/read-seg-from-readn.c -D__mod_name__=libs/sraxf -D__file_name__=read-seg-from-readn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o rewrite-spot-name.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/rewrite-spot-name.c -D__mod_name__=libs/sraxf -D__file_name__=rewrite-spot-name -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o make-position.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/make-position.c -D__mod_name__=libs/sraxf -D__file_name__=make-position -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o process-position.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/process-position.c -D__mod_name__=libs/sraxf -D__file_name__=process-position -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o extract-coordinates.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/extract-coordinates.c -D__mod_name__=libs/sraxf -D__file_name__=extract-coordinates -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o fpcodec.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/fpcodec.c -D__mod_name__=libs/sraxf -D__file_name__=fpcodec -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o index_lookup.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/index_lookup.c -D__mod_name__=libs/sraxf -D__file_name__=index_lookup -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o varloc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/varloc.c -D__mod_name__=libs/sraxf -D__file_name__=varloc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o spot-filter.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/spot-filter.c -D__mod_name__=libs/sraxf -D__file_name__=spot-filter -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o syn_quality.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/syn_quality.c -D__mod_name__=libs/sraxf -D__file_name__=syn_quality -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o extract-name_fmt.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/extract-name_fmt.c -D__mod_name__=libs/sraxf -D__file_name__=extract-name_fmt -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o extract-spot_name.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/extract-spot_name.c -D__mod_name__=libs/sraxf -D__file_name__=extract-spot_name -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stats.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/stats.c -D__mod_name__=libs/sraxf -D__file_name__=stats -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o stats_quality.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/stats_quality.c -D__mod_name__=libs/sraxf -D__file_name__=stats_quality -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o qual4_encode.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/qual4_encode.c -D__mod_name__=libs/sraxf -D__file_name__=qual4_encode -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o set-rna-flag.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf/set-rna-flag.c -D__mod_name__=libs/sraxf -D__file_name__=set-rna-flag -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sraxf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sraxf' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libsraxf.a untyped.pic.o v0-decompress-init.pic.o v0-decompress.pic.o v0-funcs.pic.o bio-start.pic.o dynamic-454-read-descriptor.pic.o format-spot-name.pic.o extract-name_coord.pic.o tokenize-spot_name-454.pic.o tokenize-spot_name-illumina.pic.o tokenize-spot_name-abi.pic.o tokenize-spot_name-helicos.pic.o tokenize-spot_name-ion-torrent.pic.o tokenize-spot_name-generic-fastq.pic.o color-from-dna.pic.o dna-from-color.pic.o use-rna-flag.pic.o spot-desc.pic.o read-desc.pic.o rotate.pic.o swap.pic.o denormalize.pic.o normalize.pic.o qual4_decode.pic.o read-seg-from-readn.pic.o rewrite-spot-name.pic.o make-position.pic.o process-position.pic.o extract-coordinates.pic.o fpcodec.pic.o index_lookup.pic.o varloc.pic.o spot-filter.pic.o syn_quality.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwsraxf.a untyped.pic.o v0-decompress-init.pic.o v0-decompress.pic.o v0-funcs.pic.o bio-start.pic.o dynamic-454-read-descriptor.pic.o format-spot-name.pic.o extract-name_coord.pic.o tokenize-spot_name-454.pic.o tokenize-spot_name-illumina.pic.o tokenize-spot_name-abi.pic.o tokenize-spot_name-helicos.pic.o tokenize-spot_name-ion-torrent.pic.o tokenize-spot_name-generic-fastq.pic.o color-from-dna.pic.o dna-from-color.pic.o use-rna-flag.pic.o spot-desc.pic.o read-desc.pic.o rotate.pic.o swap.pic.o denormalize.pic.o normalize.pic.o qual4_decode.pic.o read-seg-from-readn.pic.o rewrite-spot-name.pic.o make-position.pic.o process-position.pic.o extract-coordinates.pic.o fpcodec.pic.o index_lookup.pic.o varloc.pic.o spot-filter.pic.o syn_quality.pic.o extract-name_fmt.pic.o extract-spot_name.pic.o stats.pic.o stats_quality.pic.o qual4_encode.pic.o set-rna-flag.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sraxf' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sraxf' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/align' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o bam.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bam.c -D__mod_name__=libs/align -D__file_name__=bam -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align-access.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/align-access.c -D__mod_name__=libs/align -D__file_name__=align-access -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align_mgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/align_mgr.c -D__mod_name__=libs/align -D__file_name__=align_mgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o al_iterator.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/al_iterator.c -D__mod_name__=libs/align -D__file_name__=al_iterator -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o unsupported_pileup_estimator.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unsupported_pileup_estimator.c -D__mod_name__=libs/align -D__file_name__=unsupported_pileup_estimator -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ref_iterator.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ref_iterator.c -D__mod_name__=libs/align -D__file_name__=ref_iterator -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o pl_iterator.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/pl_iterator.c -D__mod_name__=libs/align -D__file_name__=pl_iterator -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dna-reverse-cmpl.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/dna-reverse-cmpl.c -D__mod_name__=libs/align -D__file_name__=dna-reverse-cmpl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reference-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/reference-cmn.c -D__mod_name__=libs/align -D__file_name__=reference-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/reader-cmn.c -D__mod_name__=libs/align -D__file_name__=reader-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-refseq.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/reader-refseq.c -D__mod_name__=libs/align -D__file_name__=reader-refseq -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-wgs.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/reader-wgs.c -D__mod_name__=libs/align -D__file_name__=reader-wgs -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reference.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/reference.c -D__mod_name__=libs/align -D__file_name__=reference -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o refseq-mgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/refseq-mgr.c -D__mod_name__=libs/align -D__file_name__=refseq-mgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o quality-quantizer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/quality-quantizer.c -D__mod_name__=libs/align -D__file_name__=quality-quantizer -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o writer-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/writer-cmn.c -D__mod_name__=libs/align -D__file_name__=writer-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o writer-refseq.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/writer-refseq.c -D__mod_name__=libs/align -D__file_name__=writer-refseq -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o writer-alignment.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/writer-alignment.c -D__mod_name__=libs/align -D__file_name__=writer-alignment -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o writer-sequence.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/writer-sequence.c -D__mod_name__=libs/align -D__file_name__=writer-sequence -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o writer-ref.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/writer-ref.c -D__mod_name__=libs/align -D__file_name__=writer-ref -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o writer-reference.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/writer-reference.c -D__mod_name__=libs/align -D__file_name__=writer-reference -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/align' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/align' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libncbi-bam.a bam.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libalign-writer.a dna-reverse-cmpl.pic.o reader-cmn.pic.o reference-cmn.pic.o reader-refseq.pic.o reader-wgs.pic.o refseq-mgr.pic.o writer-cmn.pic.o writer-refseq.pic.o writer-alignment.pic.o writer-sequence.pic.o writer-ref.pic.o writer-reference.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libalign-access.a align-access.pic.o cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o samextract-grammar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/samextract-grammar.c -D__mod_name__=libs/align -D__file_name__=samextract-grammar -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o samextract-lex.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/samextract-lex.c -D__mod_name__=libs/align -D__file_name__=samextract-lex -D__file_ext__=c c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o samextract-lib.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/samextract-lib.cpp -D__mod_name__=libs/align -D__file_name__=samextract-lib -D__file_ext__=cpp c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o samextract-bam.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/samextract-bam.cpp -D__mod_name__=libs/align -D__file_name__=samextract-bam -D__file_ext__=cpp cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o samextract-pool.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/samextract-pool.c -D__mod_name__=libs/align -D__file_name__=samextract-pool -D__file_ext__=c ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libsam-extract.a samextract-grammar.pic.o samextract-lex.pic.o samextract-lib.pic.o samextract-bam.pic.o samextract-pool.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libalign-reader.a align_mgr.pic.o al_iterator.pic.o unsupported_pileup_estimator.pic.o ref_iterator.pic.o pl_iterator.pic.o dna-reverse-cmpl.pic.o reference-cmn.pic.o reader-cmn.pic.o reader-refseq.pic.o reader-wgs.pic.o reference.pic.o refseq-mgr.pic.o quality-quantizer.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/align' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/axf' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ref-tbl-sub-select.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ref-tbl-sub-select.c -D__mod_name__=libs/axf -D__file_name__=ref-tbl-sub-select -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ref-restore-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ref-restore-read.c -D__mod_name__=libs/axf -D__file_name__=ref-restore-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align-restore-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/align-restore-read.c -D__mod_name__=libs/axf -D__file_name__=align-restore-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o raw-restore-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/raw-restore-read.c -D__mod_name__=libs/axf -D__file_name__=raw-restore-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o raw-restore-qual.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/raw-restore-qual.c -D__mod_name__=libs/axf -D__file_name__=raw-restore-qual -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o seq-restore-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/seq-restore-read.c -D__mod_name__=libs/axf -D__file_name__=seq-restore-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o seq-restore-linkage-group.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/seq-restore-linkage-group.c -D__mod_name__=libs/axf -D__file_name__=seq-restore-linkage-group -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o seq-construct-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/seq-construct-read.c -D__mod_name__=libs/axf -D__file_name__=seq-construct-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o cigar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/cigar.c -D__mod_name__=libs/axf -D__file_name__=cigar -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o project_read_from_sequence.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/project_read_from_sequence.c -D__mod_name__=libs/axf -D__file_name__=project_read_from_sequence -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o not-my-row.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/not-my-row.c -D__mod_name__=libs/axf -D__file_name__=not-my-row -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o template-len.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/template-len.c -D__mod_name__=libs/axf -D__file_name__=template-len -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o get-sam-flags.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/get-sam-flags.c -D__mod_name__=libs/axf -D__file_name__=get-sam-flags -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align-ref-pos.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/align-ref-pos.c -D__mod_name__=libs/axf -D__file_name__=align-ref-pos -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align-ref-name.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/align-ref-name.c -D__mod_name__=libs/axf -D__file_name__=align-ref-name -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align-ref-seq-id.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/align-ref-seq-id.c -D__mod_name__=libs/axf -D__file_name__=align-ref-seq-id -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align-local_ref_id.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/align-local_ref_id.c -D__mod_name__=libs/axf -D__file_name__=align-local_ref_id -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o align-local_ref_start.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/align-local_ref_start.c -D__mod_name__=libs/axf -D__file_name__=align-local_ref_start -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o generate-mismatch-qual.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/generate-mismatch-qual.c -D__mod_name__=libs/axf -D__file_name__=generate-mismatch-qual -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o mismatch-restore-qual.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/mismatch-restore-qual.c -D__mod_name__=libs/axf -D__file_name__=mismatch-restore-qual -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ref-preserve_qual.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ref-preserve_qual.c -D__mod_name__=libs/axf -D__file_name__=ref-preserve_qual -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ref-tbl.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/ref-tbl.c -D__mod_name__=libs/axf -D__file_name__=ref-tbl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o make-cmp-read_desc.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/make-cmp-read_desc.c -D__mod_name__=libs/axf -D__file_name__=make-cmp-read_desc -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o get_mate_align_ids.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/get_mate_align_ids.c -D__mod_name__=libs/axf -D__file_name__=get_mate_align_ids -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o range-list.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/range-list.c -D__mod_name__=libs/axf -D__file_name__=range-list -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o refseq.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/refseq.c -D__mod_name__=libs/axf -D__file_name__=refseq -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wgs.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/wgs.c -D__mod_name__=libs/axf -D__file_name__=wgs -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o restore-read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/restore-read.c -D__mod_name__=libs/axf -D__file_name__=restore-read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o refseq-stats.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf/refseq-stats.c -D__mod_name__=libs/axf -D__file_name__=refseq-stats -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/axf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/axf' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libaxf.a ref-tbl-sub-select.pic.o ref-restore-read.pic.o align-restore-read.pic.o raw-restore-read.pic.o raw-restore-qual.pic.o seq-restore-read.pic.o seq-restore-linkage-group.pic.o seq-construct-read.pic.o cigar.pic.o project_read_from_sequence.pic.o not-my-row.pic.o template-len.pic.o get-sam-flags.pic.o align-ref-pos.pic.o align-ref-name.pic.o align-ref-seq-id.pic.o align-local_ref_id.pic.o align-local_ref_start.pic.o generate-mismatch-qual.pic.o mismatch-restore-qual.pic.o ref-preserve_qual.pic.o ref-tbl.pic.o make-cmp-read_desc.pic.o get_mate_align_ids.pic.o range-list.pic.o refseq.pic.o wgs.pic.o restore-read.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwaxf.a ref-tbl-sub-select.pic.o ref-restore-read.pic.o align-restore-read.pic.o raw-restore-read.pic.o raw-restore-qual.pic.o seq-restore-read.pic.o seq-restore-linkage-group.pic.o seq-construct-read.pic.o cigar.pic.o project_read_from_sequence.pic.o not-my-row.pic.o template-len.pic.o get-sam-flags.pic.o align-ref-pos.pic.o align-ref-name.pic.o align-ref-seq-id.pic.o align-local_ref_id.pic.o align-local_ref_start.pic.o generate-mismatch-qual.pic.o mismatch-restore-qual.pic.o ref-preserve_qual.pic.o ref-tbl.pic.o make-cmp-read_desc.pic.o get_mate_align_ids.pic.o range-list.pic.o refseq.pic.o wgs.pic.o restore-read.pic.o refseq-stats.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/axf' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/axf' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/wgsxf' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o build_scaffold.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/build_scaffold.c -D__mod_name__=libs/wgsxf -D__file_name__=build_scaffold -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o build_read_type.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf/build_read_type.c -D__mod_name__=libs/wgsxf -D__file_name__=build_read_type -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/wgsxf' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/wgsxf' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwgsxf.a build_scaffold.pic.o build_read_type.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwwgsxf.a build_scaffold.pic.o build_read_type.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/wgsxf' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/wgsxf' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ktst' c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o testenv.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/testenv.cpp -D__mod_name__=libs/ktst -D__file_name__=testenv -D__file_ext__=cpp c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o systestenv.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/unix/systestenv.cpp -D__mod_name__=libs/ktst -D__file_name__=systestenv -D__file_ext__=cpp c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o testcase.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/testcase.cpp -D__mod_name__=libs/ktst -D__file_name__=testcase -D__file_ext__=cpp c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o testrunner.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst/testrunner.cpp -D__mod_name__=libs/ktst -D__file_name__=testrunner -D__file_ext__=cpp gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ktst' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ktst' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libktst.a testenv.pic.o systestenv.pic.o testcase.pic.o testrunner.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ktst' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ktst' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/loader' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o mmarray.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/mmarray.c -D__mod_name__=libs/loader -D__file_name__=mmarray -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o common-reader.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/common-reader.c -D__mod_name__=libs/loader -D__file_name__=common-reader -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o common-writer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/common-writer.c -D__mod_name__=libs/loader -D__file_name__=common-writer -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sequence-writer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/sequence-writer.c -D__mod_name__=libs/loader -D__file_name__=sequence-writer -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reference-writer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/reference-writer.c -D__mod_name__=libs/loader -D__file_name__=reference-writer -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o alignment-writer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader/alignment-writer.c -D__mod_name__=libs/loader -D__file_name__=alignment-writer -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/loader' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/loader' gmake[5]: Nothing to be done for '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/std'. gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/loader' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/loader' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/blast' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o blast-mgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/blast-mgr.c -D__mod_name__=libs/blast -D__file_name__=blast-mgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/reader.c -D__mod_name__=libs/blast -D__file_name__=reader -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reference.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/reference.c -D__mod_name__=libs/blast -D__file_name__=reference -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o run-set.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast/run-set.c -D__mod_name__=libs/blast -D__file_name__=run-set -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/blast' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/blast' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libvdb-blast.a blast-mgr.pic.o reader.pic.o reference.pic.o run-set.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/blast' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/blast' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ascp' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ascp.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/ascp.c -D__mod_name__=libs/ascp -D__file_name__=ascp -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ascp-path.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/linux/ascp-path.c -D__mod_name__=libs/ascp -D__file_name__=ascp-path -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o connect.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp/unix/connect.c -D__mod_name__=libs/ascp -D__file_name__=connect -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ascp' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ascp' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libascp.a ascp.pic.o ascp-path.pic.o connect.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ascp' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ascp' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/schema' gmake[5]: Nothing to be done for '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/compile'. gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/schema' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/schema' c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o schema-grammar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/schema-grammar.cpp -D__mod_name__=libs/schema -D__file_name__=schema-grammar -D__file_ext__=cpp cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema 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-DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o ASTBuilder-view.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema/ASTBuilder-view.cpp -D__mod_name__=libs/schema -D__file_name__=ASTBuilder-view -D__file_ext__=cpp ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libschema.a schema-grammar.pic.o schema-lex.pic.o Token.pic.o SchemaScanner.pic.o SchemaParser.pic.o ParseTree.pic.o schema-ast.pic.o AST.pic.o ASTBuilder.pic.o ASTBuilder-type.pic.o ASTBuilder-func.pic.o ASTBuilder-phys.pic.o ASTBuilder-tbl.pic.o ASTBuilder-db.pic.o ErrorReport.pic.o ASTBuilder-view.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/schema' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/schema' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sra' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sramgr-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/sramgr-cmn.c -D__mod_name__=libs/sra -D__file_name__=sramgr-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sratbl-cmn.pic.o -fPIC -D_LIBRARY 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sracol.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/sracol.c -D__mod_name__=libs/sra -D__file_name__=sracol -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o types.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/types.c -D__mod_name__=libs/sra -D__file_name__=types -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sracache.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/sracache.c -D__mod_name__=libs/sra -D__file_name__=sracache -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sramgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/sramgr.c -D__mod_name__=libs/sra -D__file_name__=sramgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sratbl.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/sratbl.c -D__mod_name__=libs/sra -D__file_name__=sratbl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wsramgr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/wsramgr.c -D__mod_name__=libs/sra -D__file_name__=wsramgr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o wsratbl.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/wsratbl.c -D__mod_name__=libs/sra -D__file_name__=wsratbl -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-cmn.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/reader-cmn.c -D__mod_name__=libs/sra -D__file_name__=reader-cmn -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-fastq.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/reader-fastq.c -D__mod_name__=libs/sra -D__file_name__=reader-fastq -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-sff.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/reader-sff.c -D__mod_name__=libs/sra -D__file_name__=reader-sff -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-illumina.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/reader-illumina.c -D__mod_name__=libs/sra -D__file_name__=reader-illumina -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o reader-abi.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra/reader-abi.c -D__mod_name__=libs/sra -D__file_name__=reader-abi -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sra' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sra' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libsradb.a sramgr-cmn.pic.o sratbl-cmn.pic.o sracol.pic.o types.pic.o sracache.pic.o sramgr.pic.o sratbl.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libwsradb.a sramgr-cmn.pic.o sratbl-cmn.pic.o sracol.pic.o types.pic.o sracache.pic.o wsramgr.pic.o wsratbl.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libsrareader.a reader-cmn.pic.o reader-fastq.pic.o reader-sff.pic.o reader-illumina.pic.o reader-abi.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/sra' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/sra' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ngs' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NCBI-NGS.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NCBI-NGS.c -D__mod_name__=libs/ngs -D__file_name__=NCBI-NGS -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o CSRA1_PileupEvent.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/CSRA1_PileupEvent.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_PileupEvent -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o CSRA1_Pileup.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/CSRA1_Pileup.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_Pileup -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o CSRA1_Alignment.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/CSRA1_Alignment.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_Alignment -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o CSRA1_ReferenceWindow.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/CSRA1_ReferenceWindow.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_ReferenceWindow -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o CSRA1_Reference.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/CSRA1_Reference.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_Reference -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o CSRA1_ReadCollection.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/CSRA1_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_ReadCollection -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o CSRA1_Read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/CSRA1_Read.c -D__mod_name__=libs/ngs -D__file_name__=CSRA1_Read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o EBI_ReferenceSequence.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/EBI_ReferenceSequence.c -D__mod_name__=libs/ngs -D__file_name__=EBI_ReferenceSequence -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o SRA_Statistics.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/SRA_Statistics.c -D__mod_name__=libs/ngs -D__file_name__=SRA_Statistics -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o SRA_DB_ReadCollection.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/SRA_DB_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=SRA_DB_ReadCollection -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o SRA_Read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/SRA_Read.c -D__mod_name__=libs/ngs -D__file_name__=SRA_Read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o SRA_ReadGroup.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/SRA_ReadGroup.c -D__mod_name__=libs/ngs -D__file_name__=SRA_ReadGroup -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o SRA_ReadGroupInfo.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/SRA_ReadGroupInfo.c -D__mod_name__=libs/ngs -D__file_name__=SRA_ReadGroupInfo -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o SRA_ReadCollection.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/SRA_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=SRA_ReadCollection -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o SRA_ReferenceSequence.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/SRA_ReferenceSequence.c -D__mod_name__=libs/ngs -D__file_name__=SRA_ReferenceSequence -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Statistics.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Statistics.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Statistics -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_ReadCollection.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_ReadCollection.c -D__mod_name__=libs/ngs -D__file_name__=NGS_ReadCollection -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_PileupEvent.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_PileupEvent.c -D__mod_name__=libs/ngs -D__file_name__=NGS_PileupEvent -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Pileup.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Pileup.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Pileup -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_ReadGroup.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_ReadGroup.c -D__mod_name__=libs/ngs -D__file_name__=NGS_ReadGroup -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Alignment.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Alignment.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Alignment -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Reference.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Reference.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Reference -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_ReferenceSequence.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_ReferenceSequence.c -D__mod_name__=libs/ngs -D__file_name__=NGS_ReferenceSequence -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Read.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Read.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Read -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Fragment.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Fragment.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Fragment -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux 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-D__file_name__=NGS_Cursor -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Refcount.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Refcount.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Refcount -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_String.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_String.c -D__mod_name__=libs/ngs -D__file_name__=NGS_String -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_Id.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_Id.c -D__mod_name__=libs/ngs -D__file_name__=NGS_Id -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_ErrBlock.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_ErrBlock.c -D__mod_name__=libs/ngs -D__file_name__=NGS_ErrBlock -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o NGS_FragmentBlob.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/NGS_FragmentBlob.c -D__mod_name__=libs/ngs -D__file_name__=NGS_FragmentBlob -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces 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-DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext 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-DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/../ngs/ngs-sdk -MD -o VByteBlob.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/VByteBlob.c -D__mod_name__=libs/ngs -D__file_name__=VByteBlob -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ngs' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ngs' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libngs.a NCBI-NGS.pic.o CSRA1_PileupEvent.pic.o CSRA1_Pileup.pic.o CSRA1_Alignment.pic.o CSRA1_ReferenceWindow.pic.o CSRA1_Reference.pic.o CSRA1_ReadCollection.pic.o CSRA1_Read.pic.o EBI_ReferenceSequence.pic.o 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libncbi-ngs-c++.a libncbi-ngs-c++-static.a gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ngs-c++' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs-c++' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs-jni' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ngs-jni' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs-jni/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs-jni/linux 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/usr/local/include -MD -o hdf5file.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/hdf5/hdf5file.c -D__mod_name__=libs/hdf5 -D__file_name__=hdf5file -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/hdf5/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/hdf5/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/hdf5/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/hdf5 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -I/usr/local/include -MD -o hdf5arrayfile.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/hdf5/hdf5arrayfile.c -D__mod_name__=libs/hdf5 -D__file_name__=hdf5arrayfile -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/hdf5' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/hdf5' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libkdf5.a.2.11.0 hdf5dir.pic.o hdf5file.pic.o hdf5arrayfile.pic.o ln -s libkdf5.a.2.11.0 libkdf5.a.2 ln -s libkdf5.a.2 libkdf5.a ln -s libkdf5.a libkdf5-static.a cc -shared -o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libkdf5.so.2.11.0 -Wl,-soname,libkdf5.so.2 -L/usr/local/lib -DNDEBUG -m64 -DNDEBUG -m64 hdf5dir.pic.o hdf5file.pic.o hdf5arrayfile.pic.o -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -lhdf5 -lz -lbz2 -lpthread -lm ln -s libkdf5.so.2.11.0 libkdf5.so.2 ln -s libkdf5.so.2 libkdf5.so gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/hdf5' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/hdf5' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/diagnose' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o diagnose.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose/diagnose.c -D__mod_name__=libs/diagnose -D__file_name__=diagnose -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o endpoint.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose/endpoint.c -D__mod_name__=libs/diagnose -D__file_name__=endpoint -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/diagnose' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/diagnose' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libdiagnose.a.2.11.0 diagnose.pic.o endpoint.pic.o ln -s libdiagnose.a.2.11.0 libdiagnose.a.2 ln -s libdiagnose.a.2 libdiagnose.a ln -s libdiagnose.a libdiagnose-static.a cc -shared -o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libdiagnose.so.2.11.0 -Wl,-soname,libdiagnose.so.2 -L/usr/local/lib -DNDEBUG -m64 -DNDEBUG -m64 diagnose.pic.o endpoint.pic.o -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -lz -lbz2 -lpthread -lm ln -s libdiagnose.so.2.11.0 libdiagnose.so.2 ln -s libdiagnose.so.2 libdiagnose.so gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/diagnose' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/diagnose' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/tui' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o systui.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd/systui.c -D__mod_name__=libs/tui -D__file_name__=systui -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o screen.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/screen.c -D__mod_name__=libs/tui -D__file_name__=screen -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o string_cache.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/string_cache.c -D__mod_name__=libs/tui -D__file_name__=string_cache -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o eventring.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/eventring.c -D__mod_name__=libs/tui -D__file_name__=eventring -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui.c -D__mod_name__=libs/tui -D__file_name__=tui -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o line_policy.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/line_policy.c -D__mod_name__=libs/tui -D__file_name__=line_policy -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_palette.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_palette.c -D__mod_name__=libs/tui -D__file_name__=tui_palette -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget.c -D__mod_name__=libs/tui -D__file_name__=tui_widget -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_label.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_label.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_label -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_button.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_button.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_button -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_tabhdr.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_tabhdr.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_tabhdr -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_checkbox.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_checkbox.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_checkbox -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_inputline.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_inputline.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_inputline -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_radiobox.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_radiobox.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_radiobox -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_string_list.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_string_list.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_string_list -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_progress.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_progress.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_progress -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_spin_edit.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_spin_edit.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_spin_edit -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_widget_grid.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_widget_grid.c -D__mod_name__=libs/tui -D__file_name__=tui_widget_grid -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_menu.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_menu.c -D__mod_name__=libs/tui -D__file_name__=tui_menu -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_dlg_helper.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_dlg_helper.c -D__mod_name__=libs/tui -D__file_name__=tui_dlg_helper -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_dlg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_dlg.c -D__mod_name__=libs/tui -D__file_name__=tui_dlg -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o dir_dlg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/dir_dlg.c -D__mod_name__=libs/tui -D__file_name__=dir_dlg -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o file_dlg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/file_dlg.c -D__mod_name__=libs/tui -D__file_name__=file_dlg -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_std_dlg.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_std_dlg.c -D__mod_name__=libs/tui -D__file_name__=tui_std_dlg -D__file_ext__=c c++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o tui_cpp.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui/tui_cpp.cpp -D__mod_name__=libs/tui -D__file_name__=tui_cpp -D__file_ext__=cpp gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/tui' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/tui' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libtui.a systui.pic.o screen.pic.o string_cache.pic.o eventring.pic.o tui.pic.o line_policy.pic.o tui_palette.pic.o tui_widget.pic.o tui_widget_label.pic.o tui_widget_button.pic.o tui_widget_tabhdr.pic.o tui_widget_checkbox.pic.o tui_widget_inputline.pic.o tui_widget_radiobox.pic.o tui_widget_string_list.pic.o tui_widget_progress.pic.o tui_widget_spin_edit.pic.o tui_widget_grid.pic.o tui_menu.pic.o tui_dlg_helper.pic.o tui_dlg.pic.o dir_dlg.pic.o file_dlg.pic.o tui_std_dlg.pic.o ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib/libtui_cpp.a tui_cpp.pic.o gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/tui' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/tui' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ncbi-vdb' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ncbi-vdb' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libncbi-vdb.a.2.11.0 ld-tmp/align-reader-align_mgr.pic.o ld-tmp/align-reader-al_iterator.pic.o ld-tmp/align-reader-unsupported_pileup_estimator.pic.o ld-tmp/align-reader-ref_iterator.pic.o ld-tmp/align-reader-pl_iterator.pic.o ld-tmp/align-reader-dna-reverse-cmpl.pic.o ld-tmp/align-reader-reference-cmn.pic.o ld-tmp/align-reader-reader-cmn.pic.o ld-tmp/align-reader-reader-refseq.pic.o ld-tmp/align-reader-reader-wgs.pic.o ld-tmp/align-reader-reference.pic.o ld-tmp/align-reader-refseq-mgr.pic.o ld-tmp/align-reader-quality-quantizer.pic.o ld-tmp/ascp-ascp.pic.o ld-tmp/ascp-ascp-path.pic.o ld-tmp/ascp-connect.pic.o ld-tmp/axf-ref-tbl-sub-select.pic.o ld-tmp/axf-ref-restore-read.pic.o ld-tmp/axf-align-restore-read.pic.o ld-tmp/axf-raw-restore-read.pic.o ld-tmp/axf-raw-restore-qual.pic.o ld-tmp/axf-seq-restore-read.pic.o ld-tmp/axf-seq-restore-linkage-group.pic.o ld-tmp/axf-seq-construct-read.pic.o ld-tmp/axf-cigar.pic.o ld-tmp/axf-project_read_from_sequence.pic.o ld-tmp/axf-not-my-row.pic.o ld-tmp/axf-template-len.pic.o ld-tmp/axf-get-sam-flags.pic.o ld-tmp/axf-align-ref-pos.pic.o ld-tmp/axf-align-ref-name.pic.o ld-tmp/axf-align-ref-seq-id.pic.o ld-tmp/axf-align-local_ref_id.pic.o ld-tmp/axf-align-local_ref_start.pic.o ld-tmp/axf-generate-mismatch-qual.pic.o ld-tmp/axf-mismatch-restore-qual.pic.o ld-tmp/axf-ref-preserve_qual.pic.o ld-tmp/axf-ref-tbl.pic.o ld-tmp/axf-make-cmp-read_desc.pic.o ld-tmp/axf-get_mate_align_ids.pic.o ld-tmp/axf-range-list.pic.o ld-tmp/axf-refseq.pic.o ld-tmp/axf-wgs.pic.o ld-tmp/axf-restore-read.pic.o ld-tmp/sraxf-untyped.pic.o ld-tmp/sraxf-v0-decompress-init.pic.o ld-tmp/sraxf-v0-decompress.pic.o ld-tmp/sraxf-v0-funcs.pic.o ld-tmp/sraxf-bio-start.pic.o ld-tmp/sraxf-dynamic-454-read-descriptor.pic.o ld-tmp/sraxf-format-spot-name.pic.o ld-tmp/sraxf-extract-name_coord.pic.o ld-tmp/sraxf-tokenize-spot_name-454.pic.o ld-tmp/sraxf-tokenize-spot_name-illumina.pic.o ld-tmp/sraxf-tokenize-spot_name-abi.pic.o ld-tmp/sraxf-tokenize-spot_name-helicos.pic.o ld-tmp/sraxf-tokenize-spot_name-ion-torrent.pic.o ld-tmp/sraxf-tokenize-spot_name-generic-fastq.pic.o ld-tmp/sraxf-color-from-dna.pic.o ld-tmp/sraxf-dna-from-color.pic.o ld-tmp/sraxf-use-rna-flag.pic.o ld-tmp/sraxf-spot-desc.pic.o ld-tmp/sraxf-read-desc.pic.o ld-tmp/sraxf-rotate.pic.o ld-tmp/sraxf-swap.pic.o ld-tmp/sraxf-denormalize.pic.o ld-tmp/sraxf-normalize.pic.o ld-tmp/sraxf-qual4_decode.pic.o ld-tmp/sraxf-read-seg-from-readn.pic.o ld-tmp/sraxf-rewrite-spot-name.pic.o ld-tmp/sraxf-make-position.pic.o ld-tmp/sraxf-process-position.pic.o ld-tmp/sraxf-extract-coordinates.pic.o ld-tmp/sraxf-fpcodec.pic.o ld-tmp/sraxf-index_lookup.pic.o ld-tmp/sraxf-varloc.pic.o ld-tmp/sraxf-spot-filter.pic.o ld-tmp/sraxf-syn_quality.pic.o ld-tmp/wgsxf-build_scaffold.pic.o ld-tmp/wgsxf-build_read_type.pic.o ld-tmp/vxf-ceil.pic.o ld-tmp/vxf-clip.pic.o ld-tmp/vxf-cut.pic.o ld-tmp/vxf-echo.pic.o ld-tmp/vxf-exists.pic.o ld-tmp/vxf-floor.pic.o ld-tmp/vxf-paste.pic.o ld-tmp/vxf-round.pic.o ld-tmp/vxf-trunc.pic.o ld-tmp/vxf-unzip.pic.o ld-tmp/vxf-map.pic.o ld-tmp/vxf-funzip.pic.o ld-tmp/vxf-vec-sum.pic.o ld-tmp/vxf-min.pic.o ld-tmp/vxf-max.pic.o ld-tmp/vxf-rldecode.pic.o ld-tmp/vxf-pack.pic.o ld-tmp/vxf-unpack.pic.o ld-tmp/vxf-izip.pic.o ld-tmp/vxf-iunzip.pic.o ld-tmp/vxf-diff.pic.o ld-tmp/vxf-sum.pic.o ld-tmp/vxf-bit_or.pic.o ld-tmp/vxf-trim.pic.o ld-tmp/vxf-deriv.pic.o ld-tmp/vxf-integral.pic.o ld-tmp/vxf-integral_0.pic.o ld-tmp/vxf-delta.pic.o ld-tmp/vxf-undelta.pic.o ld-tmp/vxf-add-row-id.pic.o ld-tmp/vxf-subtract-row-id.pic.o ld-tmp/vxf-irzip.pic.o ld-tmp/vxf-rand_4na_2na.pic.o ld-tmp/vxf-outlier-encoder.pic.o ld-tmp/vxf-outlier-decoder.pic.o ld-tmp/vxf-bunzip.pic.o ld-tmp/vxf-simple-sub-select.pic.o ld-tmp/vxf-extract_token.pic.o ld-tmp/vxf-strtonum.pic.o ld-tmp/vxf-sprintf.pic.o ld-tmp/vxf-wgs-tokenize-accession.pic.o ld-tmp/vxf-lower-case-tech-reads.pic.o ld-tmp/srareader-reader-cmn.pic.o ld-tmp/srareader-reader-fastq.pic.o ld-tmp/srareader-reader-sff.pic.o ld-tmp/srareader-reader-illumina.pic.o ld-tmp/srareader-reader-abi.pic.o ld-tmp/sradb-sramgr-cmn.pic.o ld-tmp/sradb-sratbl-cmn.pic.o ld-tmp/sradb-sracol.pic.o ld-tmp/sradb-types.pic.o ld-tmp/sradb-sracache.pic.o ld-tmp/sradb-sramgr.pic.o ld-tmp/sradb-sratbl.pic.o ld-tmp/vdb-blast-blast-mgr.pic.o ld-tmp/vdb-blast-reader.pic.o ld-tmp/vdb-blast-reference.pic.o ld-tmp/vdb-blast-run-set.pic.o ld-tmp/vdb-dbmgr-cmn.pic.o ld-tmp/vdb-schema-tok.pic.o ld-tmp/vdb-schema-parse.pic.o ld-tmp/vdb-schema-type.pic.o ld-tmp/vdb-schema-func.pic.o ld-tmp/vdb-schema-prod.pic.o ld-tmp/vdb-schema-expr.pic.o ld-tmp/vdb-schema-eval.pic.o ld-tmp/vdb-schema-tbl.pic.o ld-tmp/vdb-schema-view.pic.o ld-tmp/vdb-schema-db.pic.o ld-tmp/vdb-schema-dump.pic.o ld-tmp/vdb-schema-int.pic.o ld-tmp/vdb-schema.pic.o ld-tmp/vdb-linker-int.pic.o ld-tmp/vdb-linker-cmn.pic.o ld-tmp/vdb-database-cmn.pic.o ld-tmp/vdb-database-depend.pic.o ld-tmp/vdb-database-load.pic.o ld-tmp/vdb-table-cmn.pic.o ld-tmp/vdb-table-load.pic.o ld-tmp/vdb-cursor-cmn.pic.o ld-tmp/vdb-column-cmn.pic.o ld-tmp/vdb-prod-cmn.pic.o ld-tmp/vdb-prod-expr.pic.o ld-tmp/vdb-prod-func.pic.o ld-tmp/vdb-phys-cmn.pic.o ld-tmp/vdb-phys-load.pic.o ld-tmp/vdb-blob.pic.o ld-tmp/vdb-blob-headers.pic.o ld-tmp/vdb-page-map.pic.o ld-tmp/vdb-row-id.pic.o ld-tmp/vdb-row-len.pic.o ld-tmp/vdb-fixed-row-len.pic.o ld-tmp/vdb-merge.pic.o ld-tmp/vdb-split.pic.o ld-tmp/vdb-compare.pic.o ld-tmp/vdb-meta-read.pic.o ld-tmp/vdb-meta-value.pic.o ld-tmp/vdb-meta-attr-read.pic.o ld-tmp/vdb-cast.pic.o ld-tmp/vdb-range-validate.pic.o ld-tmp/vdb-parameter-read.pic.o ld-tmp/vdb-redimension.pic.o ld-tmp/vdb-index_project.pic.o ld-tmp/vdb-index_lookup.pic.o ld-tmp/vdb-transpose.pic.o ld-tmp/vdb-delta_average.pic.o ld-tmp/vdb-report-vdb.pic.o ld-tmp/vdb-bytecode.pic.o ld-tmp/vdb-view.pic.o ld-tmp/vdb-cursor-view.pic.o ld-tmp/vdb-cursor-table.pic.o ld-tmp/vdb-dbmgr.pic.o ld-tmp/vdb-linker.pic.o ld-tmp/vdb-database.pic.o ld-tmp/vdb-table.pic.o ld-tmp/vdb-cursor.pic.o ld-tmp/vdb-column.pic.o ld-tmp/vdb-prod.pic.o ld-tmp/vdb-phys.pic.o ld-tmp/kdb-btree.pic.o ld-tmp/kdb-rowset.pic.o ld-tmp/kdb-rowset-simple.pic.o ld-tmp/kdb-dbmgr-cmn.pic.o ld-tmp/kdb-kdb.pic.o ld-tmp/kdb-dbmgr.pic.o ld-tmp/kdb-dbcc-cmn.pic.o ld-tmp/kdb-database.pic.o ld-tmp/kdb-database-cc.pic.o ld-tmp/kdb-table.pic.o ld-tmp/kdb-table-cc.pic.o ld-tmp/kdb-column.pic.o ld-tmp/kdb-column-cc.pic.o ld-tmp/kdb-coldata.pic.o ld-tmp/kdb-colidx.pic.o ld-tmp/kdb-colidx0.pic.o ld-tmp/kdb-colidx1.pic.o ld-tmp/kdb-colidx2.pic.o ld-tmp/kdb-idxblk.pic.o ld-tmp/kdb-meta.pic.o ld-tmp/kdb-index.pic.o ld-tmp/kdb-idstats.pic.o ld-tmp/kdb-trieidx-v1.pic.o ld-tmp/kdb-trieval-v1.pic.o ld-tmp/kdb-ptrieval-v1.pic.o ld-tmp/kdb-trieidx-v2.pic.o ld-tmp/kdb-trieval-v2.pic.o ld-tmp/kdb-ptrieval-v2.pic.o ld-tmp/kdb-u64idx-v3.pic.o ld-tmp/align-access-align-access.pic.o ld-tmp/ncbi-bam-bam.pic.o ld-tmp/vfs-path.pic.o ld-tmp/vfs-jwt.pic.o ld-tmp/vfs-names4-response.pic.o ld-tmp/vfs-manager.pic.o ld-tmp/vfs-remote-services.pic.o ld-tmp/vfs-resolver.pic.o ld-tmp/vfs-resolver-3.0.pic.o ld-tmp/vfs-sdl-response.pic.o ld-tmp/vfs-services.pic.o ld-tmp/vfs-services-cache.pic.o ld-tmp/vfs-SraDesc.pic.o ld-tmp/vfs-srv-response.pic.o ld-tmp/vfs-syspath.pic.o ld-tmp/cloud-cloud-mgr.pic.o ld-tmp/cloud-aws.pic.o ld-tmp/cloud-aws-auth.pic.o ld-tmp/cloud-gcp-authentication.pic.o ld-tmp/cloud-gcp.pic.o ld-tmp/cloud-cloud.pic.o ld-tmp/cloud-cloud-cmn.pic.o ld-tmp/kxml-xml.pic.o ld-tmp/kxfs-xtoc.pic.o ld-tmp/kxfs-xtoc-parsexml.pic.o ld-tmp/mbedx509-certs.pic.o ld-tmp/mbedx509-pkcs11.pic.o ld-tmp/mbedx509-x509.pic.o ld-tmp/mbedx509-x509_create.pic.o ld-tmp/mbedx509-x509_crl.pic.o ld-tmp/mbedx509-x509_crt.pic.o ld-tmp/mbedx509-x509_csr.pic.o ld-tmp/mbedx509-x509write_crt.pic.o ld-tmp/mbedx509-x509write_csr.pic.o ld-tmp/mbedtls-debug.pic.o ld-tmp/mbedtls-net_sockets.pic.o ld-tmp/mbedtls-ssl_cache.pic.o ld-tmp/mbedtls-ssl_ciphersuites.pic.o ld-tmp/mbedtls-ssl_cli.pic.o ld-tmp/mbedtls-ssl_cookie.pic.o ld-tmp/mbedtls-ssl_msg.pic.o ld-tmp/mbedtls-ssl_srv.pic.o ld-tmp/mbedtls-ssl_ticket.pic.o ld-tmp/mbedtls-ssl_tls.pic.o ld-tmp/mbedtls-ssl_tls13_keys.pic.o ld-tmp/mbedcrypto-aes.pic.o ld-tmp/mbedcrypto-aesni.pic.o ld-tmp/mbedcrypto-arc4.pic.o ld-tmp/mbedcrypto-aria.pic.o ld-tmp/mbedcrypto-asn1parse.pic.o ld-tmp/mbedcrypto-asn1write.pic.o ld-tmp/mbedcrypto-base64.pic.o ld-tmp/mbedcrypto-bignum.pic.o ld-tmp/mbedcrypto-blowfish.pic.o ld-tmp/mbedcrypto-camellia.pic.o ld-tmp/mbedcrypto-ccm.pic.o ld-tmp/mbedcrypto-chacha20.pic.o ld-tmp/mbedcrypto-chachapoly.pic.o ld-tmp/mbedcrypto-cipher.pic.o ld-tmp/mbedcrypto-cipher_wrap.pic.o ld-tmp/mbedcrypto-cmac.pic.o ld-tmp/mbedcrypto-ctr_drbg.pic.o ld-tmp/mbedcrypto-des.pic.o ld-tmp/mbedcrypto-dhm.pic.o ld-tmp/mbedcrypto-ecdh.pic.o ld-tmp/mbedcrypto-ecdsa.pic.o ld-tmp/mbedcrypto-ecjpake.pic.o ld-tmp/mbedcrypto-ecp.pic.o ld-tmp/mbedcrypto-ecp_curves.pic.o ld-tmp/mbedcrypto-entropy.pic.o ld-tmp/mbedcrypto-entropy_poll.pic.o ld-tmp/mbedcrypto-error.pic.o ld-tmp/mbedcrypto-gcm.pic.o ld-tmp/mbedcrypto-havege.pic.o ld-tmp/mbedcrypto-hkdf.pic.o ld-tmp/mbedcrypto-hmac_drbg.pic.o ld-tmp/mbedcrypto-md.pic.o ld-tmp/mbedcrypto-md2.pic.o ld-tmp/mbedcrypto-md4.pic.o ld-tmp/mbedcrypto-md5.pic.o ld-tmp/mbedcrypto-memory_buffer_alloc.pic.o ld-tmp/mbedcrypto-nist_kw.pic.o ld-tmp/mbedcrypto-oid.pic.o ld-tmp/mbedcrypto-padlock.pic.o ld-tmp/mbedcrypto-pem.pic.o ld-tmp/mbedcrypto-pk.pic.o ld-tmp/mbedcrypto-pk_wrap.pic.o ld-tmp/mbedcrypto-pkcs12.pic.o ld-tmp/mbedcrypto-pkcs5.pic.o ld-tmp/mbedcrypto-pkparse.pic.o ld-tmp/mbedcrypto-pkwrite.pic.o ld-tmp/mbedcrypto-platform.pic.o ld-tmp/mbedcrypto-platform_util.pic.o ld-tmp/mbedcrypto-poly1305.pic.o ld-tmp/mbedcrypto-psa_crypto.pic.o ld-tmp/mbedcrypto-psa_crypto_driver_wrappers.pic.o ld-tmp/mbedcrypto-psa_crypto_se.pic.o ld-tmp/mbedcrypto-psa_crypto_slot_management.pic.o ld-tmp/mbedcrypto-psa_crypto_storage.pic.o ld-tmp/mbedcrypto-psa_its_file.pic.o ld-tmp/mbedcrypto-ripemd160.pic.o ld-tmp/mbedcrypto-rsa.pic.o ld-tmp/mbedcrypto-rsa_internal.pic.o ld-tmp/mbedcrypto-sha1.pic.o ld-tmp/mbedcrypto-sha256.pic.o ld-tmp/mbedcrypto-sha512.pic.o ld-tmp/mbedcrypto-threading.pic.o ld-tmp/mbedcrypto-timing.pic.o ld-tmp/mbedcrypto-version.pic.o ld-tmp/mbedcrypto-version_features.pic.o ld-tmp/mbedcrypto-xtea.pic.o ld-tmp/kns-stream-from-buffer.pic.o ld-tmp/kns-kns_manager-ext.pic.o ld-tmp/kns-manager.pic.o ld-tmp/kns-proxy.pic.o ld-tmp/kns-stable-http-file.pic.o ld-tmp/kns-buffered-stream.pic.o ld-tmp/kns-stream.pic.o ld-tmp/kns-stream-from-files.pic.o ld-tmp/kns-stream-from-streams.pic.o ld-tmp/kns-endpoint.pic.o ld-tmp/kns-sysendpoint.pic.o ld-tmp/kns-syssock.pic.o ld-tmp/kns-sysstream.pic.o ld-tmp/kns-sysmgr.pic.o ld-tmp/kns-tls.pic.o ld-tmp/kns-syspoll.pic.o ld-tmp/kns-http-file.pic.o ld-tmp/kns-http-client.pic.o ld-tmp/kns-http-request.pic.o ld-tmp/kns-http-retrier.pic.o ld-tmp/kns-http.pic.o ld-tmp/kfg-config-lex.pic.o ld-tmp/kfg-config-grammar.pic.o ld-tmp/kfg-config.pic.o ld-tmp/kfg-config-aws.pic.o ld-tmp/kfg-kart.pic.o ld-tmp/kfg-repository.pic.o ld-tmp/kfg-properties.pic.o ld-tmp/kfg-ngc.pic.o ld-tmp/kfg-report-kfg.pic.o ld-tmp/kfg-keystore.pic.o ld-tmp/kfg-docker.pic.o ld-tmp/krypto-ciphermgr.pic.o ld-tmp/krypto-wgaencrypt.pic.o ld-tmp/krypto-encfile.pic.o ld-tmp/krypto-encfilev2.pic.o ld-tmp/krypto-cipher.pic.o ld-tmp/krypto-aes_core.pic.o ld-tmp/krypto-aes-byte.pic.o ld-tmp/krypto-cipher-byte.pic.o ld-tmp/krypto-key.pic.o ld-tmp/krypto-reencfile.pic.o ld-tmp/krypto-rsa-aes-hmac.pic.o ld-tmp/krypto-cipher-vec.vec.pic.o ld-tmp/krypto-aes-ncbi.vec.pic.o ld-tmp/krypto-cipher-vec.vecreg.pic.o ld-tmp/krypto-aes-ncbi.vecreg.pic.o ld-tmp/krypto-cipher-no-vec.aes-ni.pic.o ld-tmp/krypto-no-null-ncbi.pic.o ld-tmp/krypto-no-null-ncbi.vec.pic.o ld-tmp/krypto-no-null-ncbi.vecreg.pic.o ld-tmp/krypto-no-null-ncbi.aes-ni.pic.o ld-tmp/ksrch-search.pic.o ld-tmp/ksrch-fgrep-dumb.pic.o ld-tmp/ksrch-fgrep-boyermoore.pic.o ld-tmp/ksrch-fgrep-aho.pic.o ld-tmp/ksrch-agrep-wumanber.pic.o ld-tmp/ksrch-agrep-myers.pic.o ld-tmp/ksrch-agrep-myersunltd.pic.o ld-tmp/ksrch-agrep-dp.pic.o ld-tmp/ksrch-sw-search.pic.o ld-tmp/ksrch-nucstrstr.pic.o ld-tmp/kfs-mmap.pic.o ld-tmp/kfs-directory.pic.o ld-tmp/kfs-arrayfile.pic.o ld-tmp/kfs-file.pic.o ld-tmp/kfs-chunk-reader.pic.o ld-tmp/kfs-sysdir.pic.o ld-tmp/kfs-sysfile.pic.o ld-tmp/kfs-sysmmap.pic.o ld-tmp/kfs-syslockfile.pic.o ld-tmp/kfs-sysdll.pic.o ld-tmp/kfs-gzip.pic.o ld-tmp/kfs-bzip.pic.o ld-tmp/kfs-md5.pic.o ld-tmp/kfs-crc32.pic.o ld-tmp/kfs-arc.pic.o ld-tmp/kfs-toc.pic.o ld-tmp/kfs-tocentry.pic.o ld-tmp/kfs-tocdir.pic.o ld-tmp/kfs-tocfile.pic.o ld-tmp/kfs-sra.pic.o ld-tmp/kfs-tar.pic.o ld-tmp/kfs-teefile.pic.o ld-tmp/kfs-buffile.pic.o ld-tmp/kfs-buffile-read.pic.o ld-tmp/kfs-buffile-write.pic.o ld-tmp/kfs-subfile.pic.o ld-tmp/kfs-nullfile.pic.o ld-tmp/kfs-countfile.pic.o ld-tmp/kfs-dir_test.pic.o ld-tmp/kfs-pagefile.pic.o ld-tmp/kfs-pmem.pic.o ld-tmp/kfs-readheadfile.pic.o ld-tmp/kfs-ramfile.pic.o ld-tmp/kfs-extendable-ramfile.pic.o ld-tmp/kfs-quickmount.pic.o ld-tmp/kfs-report.pic.o ld-tmp/kfs-lockfile.pic.o ld-tmp/kfs-remove-file-task.pic.o ld-tmp/kfs-cacheteefile.pic.o ld-tmp/kfs-cacheteefile2.pic.o ld-tmp/kfs-cacheteefile3.pic.o ld-tmp/kfs-rrcachedfile.pic.o ld-tmp/kfs-recorder.pic.o ld-tmp/kfs-logfile.pic.o ld-tmp/kfs-callback_file.pic.o ld-tmp/kfs-poolpages.pic.o ld-tmp/kfs-lru_cache.pic.o ld-tmp/kfs-from_to_namelist.pic.o ld-tmp/kfs-limitfile.pic.o ld-tmp/kfs-appendfile.pic.o ld-tmp/klib-text.pic.o ld-tmp/klib-time.pic.o ld-tmp/klib-utf8.pic.o ld-tmp/klib-iso8859.pic.o ld-tmp/klib-iso8859-1.pic.o ld-tmp/klib-cp1252.pic.o ld-tmp/klib-token.pic.o ld-tmp/klib-symtab.pic.o ld-tmp/klib-container.pic.o ld-tmp/klib-vector.pic.o ld-tmp/klib-namelist.pic.o ld-tmp/klib-all-vdb-version.pic.o ld-tmp/klib-vector_namelist.pic.o ld-tmp/klib-trie.pic.o ld-tmp/klib-pbstree.pic.o ld-tmp/klib-pbstree-impl.nopt.pic.o ld-tmp/klib-pbstree-impl.swap.nopt.pic.o ld-tmp/klib-bstpersist.nopt.pic.o ld-tmp/klib-ptrie.nopt.pic.o ld-tmp/klib-ptpersist.nopt.pic.o ld-tmp/klib-crc32.pic.o ld-tmp/klib-md5.pic.o ld-tmp/klib-misc.pic.o ld-tmp/klib-SHA-32bit.pic.o ld-tmp/klib-SHA-64bit.pic.o ld-tmp/klib-qsort.pic.o ld-tmp/klib-ksort.pic.o ld-tmp/klib-bsearch.pic.o ld-tmp/klib-pack.pic.o ld-tmp/klib-unpack.pic.o ld-tmp/klib-vlen-encode.pic.o ld-tmp/klib-data-buffer.pic.o ld-tmp/klib-refcount.pic.o ld-tmp/klib-printf.pic.o ld-tmp/klib-status-rc-strings.pic.o ld-tmp/klib-status-rc.pic.o ld-tmp/klib-syserrcode.pic.o ld-tmp/klib-syswriter.pic.o ld-tmp/klib-out.pic.o ld-tmp/klib-status.pic.o ld-tmp/klib-log.pic.o ld-tmp/klib-writer.pic.o ld-tmp/klib-syslog.pic.o ld-tmp/klib-systime.pic.o ld-tmp/klib-rc-tbl.pic.o ld-tmp/klib-rc-idx-tbl.pic.o ld-tmp/klib-judy-vector.pic.o ld-tmp/klib-report-klib.pic.o ld-tmp/klib-num-gen.pic.o ld-tmp/klib-progressbar.pic.o ld-tmp/klib-sra-release-version.pic.o ld-tmp/klib-hashtable.pic.o ld-tmp/klib-hashfile.pic.o ld-tmp/klib-btree.pic.o ld-tmp/klib-json.pic.o ld-tmp/klib-json-grammar.pic.o ld-tmp/klib-json-lex.pic.o ld-tmp/klib-base64.pic.o ld-tmp/klib-guid.pic.o ld-tmp/klib-judy-JudyMalloc.n.64.pic.o ld-tmp/klib-judy-JudySL.n.64.pic.o ld-tmp/klib-judy-JudyHS.n.64.pic.o ld-tmp/klib-judy-JudyGet.w.64.pic.o ld-tmp/klib-judy-JudyIns.w.64.pic.o ld-tmp/klib-judy-JudyInsArray.w.64.pic.o ld-tmp/klib-judy-JudyDel.w.64.pic.o ld-tmp/klib-judy-JudyCascade.w.64.pic.o ld-tmp/klib-judy-JudyCount.w.64.pic.o ld-tmp/klib-judy-JudyCreateBranch.w.64.pic.o ld-tmp/klib-judy-JudyDecascade.w.64.pic.o ld-tmp/klib-judy-JudyFirst.w.64.pic.o ld-tmp/klib-judy-JudyFreeArray.w.64.pic.o ld-tmp/klib-judy-JudyInsertBranch.w.64.pic.o ld-tmp/klib-judy-JudyMallocIF.w.64.pic.o ld-tmp/klib-judy-JudyMemActive.w.64.pic.o ld-tmp/klib-judy-JudyMemUsed.w.64.pic.o ld-tmp/klib-judy-JudyNext.w.64.pic.o ld-tmp/klib-judy-JudyNextEmpty.w.64.pic.o ld-tmp/klib-judy-JudyPrev.w.64.pic.o ld-tmp/klib-judy-JudyPrevEmpty.w.64.pic.o ld-tmp/klib-judy-JudyByCountWithDefs.w.64.pic.o ld-tmp/klib-judy-j__udyGet.w.64.pic.o ld-tmp/klib-judy-_JudyLTables.w.64.pic.o ld-tmp/klib-judy-JudyGet.b.64.pic.o ld-tmp/klib-judy-JudyIns.b.64.pic.o ld-tmp/klib-judy-JudyInsArray.b.64.pic.o ld-tmp/klib-judy-JudyDel.b.64.pic.o ld-tmp/klib-judy-JudyCascade.b.64.pic.o ld-tmp/klib-judy-JudyCount.b.64.pic.o ld-tmp/klib-judy-JudyCreateBranch.b.64.pic.o ld-tmp/klib-judy-JudyDecascade.b.64.pic.o ld-tmp/klib-judy-JudyFirst.b.64.pic.o ld-tmp/klib-judy-JudyFreeArray.b.64.pic.o ld-tmp/klib-judy-JudyInsertBranch.b.64.pic.o ld-tmp/klib-judy-JudyMallocIF.b.64.pic.o ld-tmp/klib-judy-JudyMemActive.b.64.pic.o ld-tmp/klib-judy-JudyMemUsed.b.64.pic.o ld-tmp/klib-judy-JudyNext.b.64.pic.o ld-tmp/klib-judy-JudyNextEmpty.b.64.pic.o ld-tmp/klib-judy-JudyPrev.b.64.pic.o ld-tmp/klib-judy-JudyPrevEmpty.b.64.pic.o ld-tmp/klib-judy-JudyByCountWithDefs.b.64.pic.o ld-tmp/klib-judy-j__udyGet.b.64.pic.o ld-tmp/klib-judy-_Judy1Tables.b.64.pic.o ld-tmp/kproc-task.pic.o ld-tmp/kproc-sysmgr.pic.o ld-tmp/kproc-procmgr.pic.o ld-tmp/kproc-systimeout.pic.o ld-tmp/kproc-syslock.pic.o ld-tmp/kproc-systhread.pic.o ld-tmp/kproc-syscond.pic.o ld-tmp/kproc-sem.pic.o ld-tmp/kq-queue.pic.o ld-tmp/kfc-refcount.pic.o ld-tmp/kfc-tstate.pic.o ld-tmp/kfc-sysrsrc.pic.o ld-tmp/kfc-rsrc.pic.o ld-tmp/kfc-vtbl.pic.o ld-tmp/kfc-sysctx.pic.o ld-tmp/kfc-except.pic.o ld-tmp/kfc-xc.pic.o ln -s libncbi-vdb.a.2.11.0 libncbi-vdb.a.2 ln -s libncbi-vdb.a.2 libncbi-vdb.a ln -s libncbi-vdb.a libncbi-vdb-static.a ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libncbi-ngs.a.2.11.0 ld-tmp/ngs-jni-jni_Manager.pic.o ld-tmp/ngs-jni-jni_String.pic.o ld-tmp/ngs-jni-jni_ErrorMsg.pic.o ld-tmp/ngs-NCBI-NGS.pic.o ld-tmp/ngs-CSRA1_PileupEvent.pic.o ld-tmp/ngs-CSRA1_Pileup.pic.o ld-tmp/ngs-CSRA1_Alignment.pic.o ld-tmp/ngs-CSRA1_ReferenceWindow.pic.o ld-tmp/ngs-CSRA1_Reference.pic.o ld-tmp/ngs-CSRA1_ReadCollection.pic.o ld-tmp/ngs-CSRA1_Read.pic.o ld-tmp/ngs-EBI_ReferenceSequence.pic.o ld-tmp/ngs-SRA_Statistics.pic.o ld-tmp/ngs-SRA_DB_ReadCollection.pic.o ld-tmp/ngs-SRA_Read.pic.o ld-tmp/ngs-SRA_ReadGroup.pic.o ld-tmp/ngs-SRA_ReadGroupInfo.pic.o ld-tmp/ngs-SRA_ReadCollection.pic.o ld-tmp/ngs-SRA_ReferenceSequence.pic.o ld-tmp/ngs-NGS_Statistics.pic.o ld-tmp/ngs-NGS_ReadCollection.pic.o ld-tmp/ngs-NGS_PileupEvent.pic.o ld-tmp/ngs-NGS_Pileup.pic.o ld-tmp/ngs-NGS_ReadGroup.pic.o ld-tmp/ngs-NGS_Alignment.pic.o ld-tmp/ngs-NGS_Reference.pic.o ld-tmp/ngs-NGS_ReferenceSequence.pic.o ld-tmp/ngs-NGS_Read.pic.o ld-tmp/ngs-NGS_Fragment.pic.o ld-tmp/ngs-NGS_Cursor.pic.o ld-tmp/ngs-NGS_Refcount.pic.o ld-tmp/ngs-NGS_String.pic.o ld-tmp/ngs-NGS_Id.pic.o ld-tmp/ngs-NGS_ErrBlock.pic.o ld-tmp/ngs-NGS_FragmentBlob.pic.o ld-tmp/ngs-NGS_FragmentBlobIterator.pic.o ld-tmp/ngs-NGS_ReferenceBlob.pic.o ld-tmp/ngs-NGS_ReferenceBlobIterator.pic.o ld-tmp/ngs-VByteBlob.pic.o ld-tmp/ngs-py-py_Manager.pic.o ln -s libncbi-ngs.a.2.11.0 libncbi-ngs.a.2 ln -s libncbi-ngs.a.2 libncbi-ngs.a ln -s libncbi-ngs.a libncbi-ngs-static.a cc -shared -o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libncbi-vdb.so.2.11.0 -Wl,-soname,libncbi-vdb.so.2 -L/usr/local/lib -DNDEBUG -m64 -L/usr/local/lib -DNDEBUG -m64 -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -Wl,-whole-archive -lalign-reader -lascp -laxf -lsraxf -lwgsxf -lvxf -lsrareader -lsradb -lvdb-blast -lvdb -lkdb -lalign-access -lncbi-bam -lvfs -lcloud -lkxml -lkxfs -lmbedx509 -lmbedtls -lmbedcrypto -lkns -lkfg -lkrypto -lksrch -lkfs -lklib -lkproc -lkq -lkfc -lngs-jni -lngs -lngs-py -Wl,-no-whole-archive -Wl,-Bdynamic -lz -lbz2 -lpthread -lxml2 -lm ln -s libncbi-vdb.so.2.11.0 libncbi-vdb.so.2 ln -s libncbi-vdb.so.2 libncbi-vdb.so ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libncbi-wvdb.a.2.11.0 ld-tmp/align-writer-dna-reverse-cmpl.pic.o ld-tmp/align-writer-reader-cmn.pic.o ld-tmp/align-writer-reference-cmn.pic.o ld-tmp/align-writer-reader-refseq.pic.o ld-tmp/align-writer-reader-wgs.pic.o ld-tmp/align-writer-refseq-mgr.pic.o ld-tmp/align-writer-writer-cmn.pic.o ld-tmp/align-writer-writer-refseq.pic.o ld-tmp/align-writer-writer-alignment.pic.o ld-tmp/align-writer-writer-sequence.pic.o ld-tmp/align-writer-writer-ref.pic.o ld-tmp/align-writer-writer-reference.pic.o ld-tmp/waxf-ref-tbl-sub-select.pic.o ld-tmp/waxf-ref-restore-read.pic.o ld-tmp/waxf-align-restore-read.pic.o ld-tmp/waxf-raw-restore-read.pic.o ld-tmp/waxf-raw-restore-qual.pic.o ld-tmp/waxf-seq-restore-read.pic.o ld-tmp/waxf-seq-restore-linkage-group.pic.o ld-tmp/waxf-seq-construct-read.pic.o ld-tmp/waxf-cigar.pic.o ld-tmp/waxf-project_read_from_sequence.pic.o ld-tmp/waxf-not-my-row.pic.o ld-tmp/waxf-template-len.pic.o ld-tmp/waxf-get-sam-flags.pic.o ld-tmp/waxf-align-ref-pos.pic.o ld-tmp/waxf-align-ref-name.pic.o ld-tmp/waxf-align-ref-seq-id.pic.o ld-tmp/waxf-align-local_ref_id.pic.o ld-tmp/waxf-align-local_ref_start.pic.o ld-tmp/waxf-generate-mismatch-qual.pic.o ld-tmp/waxf-mismatch-restore-qual.pic.o ld-tmp/waxf-ref-preserve_qual.pic.o ld-tmp/waxf-ref-tbl.pic.o ld-tmp/waxf-make-cmp-read_desc.pic.o ld-tmp/waxf-get_mate_align_ids.pic.o ld-tmp/waxf-range-list.pic.o ld-tmp/waxf-refseq.pic.o ld-tmp/waxf-wgs.pic.o ld-tmp/waxf-restore-read.pic.o ld-tmp/waxf-refseq-stats.pic.o ld-tmp/wsraxf-untyped.pic.o ld-tmp/wsraxf-v0-decompress-init.pic.o ld-tmp/wsraxf-v0-decompress.pic.o ld-tmp/wsraxf-v0-funcs.pic.o ld-tmp/wsraxf-bio-start.pic.o ld-tmp/wsraxf-dynamic-454-read-descriptor.pic.o ld-tmp/wsraxf-format-spot-name.pic.o ld-tmp/wsraxf-extract-name_coord.pic.o ld-tmp/wsraxf-tokenize-spot_name-454.pic.o ld-tmp/wsraxf-tokenize-spot_name-illumina.pic.o ld-tmp/wsraxf-tokenize-spot_name-abi.pic.o ld-tmp/wsraxf-tokenize-spot_name-helicos.pic.o ld-tmp/wsraxf-tokenize-spot_name-ion-torrent.pic.o ld-tmp/wsraxf-tokenize-spot_name-generic-fastq.pic.o ld-tmp/wsraxf-color-from-dna.pic.o ld-tmp/wsraxf-dna-from-color.pic.o ld-tmp/wsraxf-use-rna-flag.pic.o ld-tmp/wsraxf-spot-desc.pic.o ld-tmp/wsraxf-read-desc.pic.o ld-tmp/wsraxf-rotate.pic.o ld-tmp/wsraxf-swap.pic.o ld-tmp/wsraxf-denormalize.pic.o ld-tmp/wsraxf-normalize.pic.o ld-tmp/wsraxf-qual4_decode.pic.o ld-tmp/wsraxf-read-seg-from-readn.pic.o ld-tmp/wsraxf-rewrite-spot-name.pic.o ld-tmp/wsraxf-make-position.pic.o ld-tmp/wsraxf-process-position.pic.o ld-tmp/wsraxf-extract-coordinates.pic.o ld-tmp/wsraxf-fpcodec.pic.o ld-tmp/wsraxf-index_lookup.pic.o ld-tmp/wsraxf-varloc.pic.o ld-tmp/wsraxf-spot-filter.pic.o ld-tmp/wsraxf-syn_quality.pic.o ld-tmp/wsraxf-extract-name_fmt.pic.o ld-tmp/wsraxf-extract-spot_name.pic.o ld-tmp/wsraxf-stats.pic.o ld-tmp/wsraxf-stats_quality.pic.o ld-tmp/wsraxf-qual4_encode.pic.o ld-tmp/wsraxf-set-rna-flag.pic.o ld-tmp/wwgsxf-build_scaffold.pic.o ld-tmp/wwgsxf-build_read_type.pic.o ld-tmp/wvxf-ceil.pic.o ld-tmp/wvxf-clip.pic.o ld-tmp/wvxf-cut.pic.o ld-tmp/wvxf-echo.pic.o ld-tmp/wvxf-exists.pic.o ld-tmp/wvxf-floor.pic.o ld-tmp/wvxf-paste.pic.o ld-tmp/wvxf-round.pic.o ld-tmp/wvxf-trunc.pic.o ld-tmp/wvxf-unzip.pic.o ld-tmp/wvxf-map.pic.o ld-tmp/wvxf-funzip.pic.o ld-tmp/wvxf-vec-sum.pic.o ld-tmp/wvxf-min.pic.o ld-tmp/wvxf-max.pic.o ld-tmp/wvxf-rldecode.pic.o ld-tmp/wvxf-pack.pic.o ld-tmp/wvxf-unpack.pic.o ld-tmp/wvxf-izip.pic.o ld-tmp/wvxf-iunzip.pic.o ld-tmp/wvxf-diff.pic.o ld-tmp/wvxf-sum.pic.o ld-tmp/wvxf-bit_or.pic.o ld-tmp/wvxf-trim.pic.o ld-tmp/wvxf-deriv.pic.o ld-tmp/wvxf-integral.pic.o ld-tmp/wvxf-integral_0.pic.o ld-tmp/wvxf-delta.pic.o ld-tmp/wvxf-undelta.pic.o ld-tmp/wvxf-add-row-id.pic.o ld-tmp/wvxf-subtract-row-id.pic.o ld-tmp/wvxf-irzip.pic.o ld-tmp/wvxf-rand_4na_2na.pic.o ld-tmp/wvxf-outlier-encoder.pic.o ld-tmp/wvxf-outlier-decoder.pic.o ld-tmp/wvxf-bunzip.pic.o ld-tmp/wvxf-simple-sub-select.pic.o ld-tmp/wvxf-extract_token.pic.o ld-tmp/wvxf-strtonum.pic.o ld-tmp/wvxf-sprintf.pic.o ld-tmp/wvxf-wgs-tokenize-accession.pic.o ld-tmp/wvxf-lower-case-tech-reads.pic.o ld-tmp/wvxf-zip.pic.o ld-tmp/wvxf-bzip.pic.o ld-tmp/wvxf-fzip.pic.o ld-tmp/wvxf-rlencode.pic.o ld-tmp/wvxf-checksum.pic.o ld-tmp/wsradb-sramgr-cmn.pic.o ld-tmp/wsradb-sratbl-cmn.pic.o ld-tmp/wsradb-sracol.pic.o ld-tmp/wsradb-types.pic.o ld-tmp/wsradb-sracache.pic.o ld-tmp/wsradb-wsramgr.pic.o ld-tmp/wsradb-wsratbl.pic.o ld-tmp/wvdb-dbmgr-cmn.pic.o ld-tmp/wvdb-schema-tok.pic.o ld-tmp/wvdb-schema-parse.pic.o ld-tmp/wvdb-schema-type.pic.o ld-tmp/wvdb-schema-func.pic.o ld-tmp/wvdb-schema-prod.pic.o ld-tmp/wvdb-schema-expr.pic.o ld-tmp/wvdb-schema-eval.pic.o ld-tmp/wvdb-schema-tbl.pic.o ld-tmp/wvdb-schema-view.pic.o ld-tmp/wvdb-schema-db.pic.o ld-tmp/wvdb-schema-dump.pic.o ld-tmp/wvdb-schema-int.pic.o ld-tmp/wvdb-schema.pic.o ld-tmp/wvdb-linker-int.pic.o ld-tmp/wvdb-linker-cmn.pic.o ld-tmp/wvdb-database-cmn.pic.o ld-tmp/wvdb-database-depend.pic.o ld-tmp/wvdb-database-load.pic.o ld-tmp/wvdb-table-cmn.pic.o ld-tmp/wvdb-table-load.pic.o ld-tmp/wvdb-cursor-cmn.pic.o ld-tmp/wvdb-column-cmn.pic.o ld-tmp/wvdb-prod-cmn.pic.o ld-tmp/wvdb-prod-expr.pic.o ld-tmp/wvdb-prod-func.pic.o ld-tmp/wvdb-phys-cmn.pic.o ld-tmp/wvdb-phys-load.pic.o ld-tmp/wvdb-blob.pic.o ld-tmp/wvdb-blob-headers.pic.o ld-tmp/wvdb-page-map.pic.o ld-tmp/wvdb-row-id.pic.o ld-tmp/wvdb-row-len.pic.o ld-tmp/wvdb-fixed-row-len.pic.o ld-tmp/wvdb-merge.pic.o ld-tmp/wvdb-split.pic.o ld-tmp/wvdb-compare.pic.o ld-tmp/wvdb-meta-read.pic.o ld-tmp/wvdb-meta-value.pic.o ld-tmp/wvdb-meta-attr-read.pic.o ld-tmp/wvdb-cast.pic.o ld-tmp/wvdb-range-validate.pic.o ld-tmp/wvdb-parameter-read.pic.o ld-tmp/wvdb-redimension.pic.o ld-tmp/wvdb-index_project.pic.o ld-tmp/wvdb-index_lookup.pic.o ld-tmp/wvdb-transpose.pic.o ld-tmp/wvdb-delta_average.pic.o ld-tmp/wvdb-report-vdb.pic.o ld-tmp/wvdb-bytecode.pic.o ld-tmp/wvdb-view.pic.o ld-tmp/wvdb-cursor-view.pic.o ld-tmp/wvdb-cursor-table.pic.o ld-tmp/wvdb-wdbmgr.pic.o ld-tmp/wvdb-wlinker.pic.o ld-tmp/wvdb-wdatabase.pic.o ld-tmp/wvdb-wtable.pic.o ld-tmp/wvdb-wcursor.pic.o ld-tmp/wvdb-wcolumn.pic.o ld-tmp/wvdb-wprod.pic.o ld-tmp/wvdb-wphys.pic.o ld-tmp/wvdb-meta-write.pic.o ld-tmp/wvdb-meta-attr-write.pic.o ld-tmp/wvdb-meta-append.pic.o ld-tmp/wvdb-index_insert.pic.o ld-tmp/wkdb-btree.pic.o ld-tmp/wkdb-rowset.pic.o ld-tmp/wkdb-rowset-simple.pic.o ld-tmp/wkdb-dbmgr-cmn.pic.o ld-tmp/wkdb-wkdb.pic.o ld-tmp/wkdb-wdbmgr.pic.o ld-tmp/wkdb-wdatabase.pic.o ld-tmp/wkdb-wtable.pic.o ld-tmp/wkdb-wcolumn.pic.o ld-tmp/wkdb-wcoldata.pic.o ld-tmp/wkdb-wcolidx.pic.o ld-tmp/wkdb-wcolidx0.pic.o ld-tmp/wkdb-wcolidx1.pic.o ld-tmp/wkdb-wcolidx2.pic.o ld-tmp/wkdb-idxblk.pic.o ld-tmp/wkdb-widxblk.pic.o ld-tmp/wkdb-wmeta.pic.o ld-tmp/wkdb-windex.pic.o ld-tmp/wkdb-wtrieidx-v1.pic.o ld-tmp/wkdb-wtrieidx-v2.pic.o ld-tmp/wkdb-wu64idx-v3.pic.o ld-tmp/align-access-align-access.pic.o ld-tmp/ncbi-bam-bam.pic.o ld-tmp/vfs-path.pic.o ld-tmp/vfs-jwt.pic.o ld-tmp/vfs-names4-response.pic.o ld-tmp/vfs-manager.pic.o ld-tmp/vfs-remote-services.pic.o ld-tmp/vfs-resolver.pic.o ld-tmp/vfs-resolver-3.0.pic.o ld-tmp/vfs-sdl-response.pic.o ld-tmp/vfs-services.pic.o ld-tmp/vfs-services-cache.pic.o ld-tmp/vfs-SraDesc.pic.o ld-tmp/vfs-srv-response.pic.o ld-tmp/vfs-syspath.pic.o ld-tmp/cloud-cloud-mgr.pic.o ld-tmp/cloud-aws.pic.o ld-tmp/cloud-aws-auth.pic.o ld-tmp/cloud-gcp-authentication.pic.o ld-tmp/cloud-gcp.pic.o ld-tmp/cloud-cloud.pic.o ld-tmp/cloud-cloud-cmn.pic.o ld-tmp/kxml-xml.pic.o ld-tmp/kxfs-xtoc.pic.o ld-tmp/kxfs-xtoc-parsexml.pic.o ld-tmp/mbedx509-certs.pic.o ld-tmp/mbedx509-pkcs11.pic.o ld-tmp/mbedx509-x509.pic.o ld-tmp/mbedx509-x509_create.pic.o ld-tmp/mbedx509-x509_crl.pic.o ld-tmp/mbedx509-x509_crt.pic.o ld-tmp/mbedx509-x509_csr.pic.o ld-tmp/mbedx509-x509write_crt.pic.o ld-tmp/mbedx509-x509write_csr.pic.o ld-tmp/mbedtls-debug.pic.o ld-tmp/mbedtls-net_sockets.pic.o ld-tmp/mbedtls-ssl_cache.pic.o ld-tmp/mbedtls-ssl_ciphersuites.pic.o ld-tmp/mbedtls-ssl_cli.pic.o ld-tmp/mbedtls-ssl_cookie.pic.o ld-tmp/mbedtls-ssl_msg.pic.o ld-tmp/mbedtls-ssl_srv.pic.o ld-tmp/mbedtls-ssl_ticket.pic.o ld-tmp/mbedtls-ssl_tls.pic.o ld-tmp/mbedtls-ssl_tls13_keys.pic.o ld-tmp/mbedcrypto-aes.pic.o ld-tmp/mbedcrypto-aesni.pic.o ld-tmp/mbedcrypto-arc4.pic.o ld-tmp/mbedcrypto-aria.pic.o ld-tmp/mbedcrypto-asn1parse.pic.o ld-tmp/mbedcrypto-asn1write.pic.o ld-tmp/mbedcrypto-base64.pic.o ld-tmp/mbedcrypto-bignum.pic.o ld-tmp/mbedcrypto-blowfish.pic.o ld-tmp/mbedcrypto-camellia.pic.o ld-tmp/mbedcrypto-ccm.pic.o ld-tmp/mbedcrypto-chacha20.pic.o ld-tmp/mbedcrypto-chachapoly.pic.o ld-tmp/mbedcrypto-cipher.pic.o ld-tmp/mbedcrypto-cipher_wrap.pic.o ld-tmp/mbedcrypto-cmac.pic.o ld-tmp/mbedcrypto-ctr_drbg.pic.o ld-tmp/mbedcrypto-des.pic.o ld-tmp/mbedcrypto-dhm.pic.o ld-tmp/mbedcrypto-ecdh.pic.o ld-tmp/mbedcrypto-ecdsa.pic.o ld-tmp/mbedcrypto-ecjpake.pic.o ld-tmp/mbedcrypto-ecp.pic.o ld-tmp/mbedcrypto-ecp_curves.pic.o ld-tmp/mbedcrypto-entropy.pic.o ld-tmp/mbedcrypto-entropy_poll.pic.o ld-tmp/mbedcrypto-error.pic.o ld-tmp/mbedcrypto-gcm.pic.o ld-tmp/mbedcrypto-havege.pic.o ld-tmp/mbedcrypto-hkdf.pic.o ld-tmp/mbedcrypto-hmac_drbg.pic.o ld-tmp/mbedcrypto-md.pic.o ld-tmp/mbedcrypto-md2.pic.o ld-tmp/mbedcrypto-md4.pic.o ld-tmp/mbedcrypto-md5.pic.o ld-tmp/mbedcrypto-memory_buffer_alloc.pic.o ld-tmp/mbedcrypto-nist_kw.pic.o ld-tmp/mbedcrypto-oid.pic.o ld-tmp/mbedcrypto-padlock.pic.o ld-tmp/mbedcrypto-pem.pic.o ld-tmp/mbedcrypto-pk.pic.o ld-tmp/mbedcrypto-pk_wrap.pic.o ld-tmp/mbedcrypto-pkcs12.pic.o ld-tmp/mbedcrypto-pkcs5.pic.o ld-tmp/mbedcrypto-pkparse.pic.o ld-tmp/mbedcrypto-pkwrite.pic.o ld-tmp/mbedcrypto-platform.pic.o ld-tmp/mbedcrypto-platform_util.pic.o ld-tmp/mbedcrypto-poly1305.pic.o ld-tmp/mbedcrypto-psa_crypto.pic.o ld-tmp/mbedcrypto-psa_crypto_driver_wrappers.pic.o ld-tmp/mbedcrypto-psa_crypto_se.pic.o ld-tmp/mbedcrypto-psa_crypto_slot_management.pic.o ld-tmp/mbedcrypto-psa_crypto_storage.pic.o ld-tmp/mbedcrypto-psa_its_file.pic.o ld-tmp/mbedcrypto-ripemd160.pic.o ld-tmp/mbedcrypto-rsa.pic.o ld-tmp/mbedcrypto-rsa_internal.pic.o ld-tmp/mbedcrypto-sha1.pic.o ld-tmp/mbedcrypto-sha256.pic.o ld-tmp/mbedcrypto-sha512.pic.o ld-tmp/mbedcrypto-threading.pic.o ld-tmp/mbedcrypto-timing.pic.o ld-tmp/mbedcrypto-version.pic.o ld-tmp/mbedcrypto-version_features.pic.o ld-tmp/mbedcrypto-xtea.pic.o ld-tmp/kns-stream-from-buffer.pic.o ld-tmp/kns-kns_manager-ext.pic.o ld-tmp/kns-manager.pic.o ld-tmp/kns-proxy.pic.o ld-tmp/kns-stable-http-file.pic.o ld-tmp/kns-buffered-stream.pic.o ld-tmp/kns-stream.pic.o ld-tmp/kns-stream-from-files.pic.o ld-tmp/kns-stream-from-streams.pic.o ld-tmp/kns-endpoint.pic.o ld-tmp/kns-sysendpoint.pic.o ld-tmp/kns-syssock.pic.o ld-tmp/kns-sysstream.pic.o ld-tmp/kns-sysmgr.pic.o ld-tmp/kns-tls.pic.o ld-tmp/kns-syspoll.pic.o ld-tmp/kns-http-file.pic.o ld-tmp/kns-http-client.pic.o ld-tmp/kns-http-request.pic.o ld-tmp/kns-http-retrier.pic.o ld-tmp/kns-http.pic.o ld-tmp/kfg-config-lex.pic.o ld-tmp/kfg-config-grammar.pic.o ld-tmp/kfg-config.pic.o ld-tmp/kfg-config-aws.pic.o ld-tmp/kfg-kart.pic.o ld-tmp/kfg-repository.pic.o ld-tmp/kfg-properties.pic.o ld-tmp/kfg-ngc.pic.o ld-tmp/kfg-report-kfg.pic.o ld-tmp/kfg-keystore.pic.o ld-tmp/kfg-docker.pic.o ld-tmp/krypto-ciphermgr.pic.o ld-tmp/krypto-wgaencrypt.pic.o ld-tmp/krypto-encfile.pic.o ld-tmp/krypto-encfilev2.pic.o ld-tmp/krypto-cipher.pic.o ld-tmp/krypto-aes_core.pic.o ld-tmp/krypto-aes-byte.pic.o ld-tmp/krypto-cipher-byte.pic.o ld-tmp/krypto-key.pic.o ld-tmp/krypto-reencfile.pic.o ld-tmp/krypto-rsa-aes-hmac.pic.o ld-tmp/krypto-cipher-vec.vec.pic.o ld-tmp/krypto-aes-ncbi.vec.pic.o ld-tmp/krypto-cipher-vec.vecreg.pic.o ld-tmp/krypto-aes-ncbi.vecreg.pic.o ld-tmp/krypto-cipher-no-vec.aes-ni.pic.o ld-tmp/krypto-no-null-ncbi.pic.o ld-tmp/krypto-no-null-ncbi.vec.pic.o ld-tmp/krypto-no-null-ncbi.vecreg.pic.o ld-tmp/krypto-no-null-ncbi.aes-ni.pic.o ld-tmp/ksrch-search.pic.o ld-tmp/ksrch-fgrep-dumb.pic.o ld-tmp/ksrch-fgrep-boyermoore.pic.o ld-tmp/ksrch-fgrep-aho.pic.o ld-tmp/ksrch-agrep-wumanber.pic.o ld-tmp/ksrch-agrep-myers.pic.o ld-tmp/ksrch-agrep-myersunltd.pic.o ld-tmp/ksrch-agrep-dp.pic.o ld-tmp/ksrch-sw-search.pic.o ld-tmp/ksrch-nucstrstr.pic.o ld-tmp/kfs-mmap.pic.o ld-tmp/kfs-directory.pic.o ld-tmp/kfs-arrayfile.pic.o ld-tmp/kfs-file.pic.o ld-tmp/kfs-chunk-reader.pic.o ld-tmp/kfs-sysdir.pic.o ld-tmp/kfs-sysfile.pic.o ld-tmp/kfs-sysmmap.pic.o ld-tmp/kfs-syslockfile.pic.o ld-tmp/kfs-sysdll.pic.o ld-tmp/kfs-gzip.pic.o ld-tmp/kfs-bzip.pic.o ld-tmp/kfs-md5.pic.o ld-tmp/kfs-crc32.pic.o ld-tmp/kfs-arc.pic.o ld-tmp/kfs-toc.pic.o ld-tmp/kfs-tocentry.pic.o ld-tmp/kfs-tocdir.pic.o ld-tmp/kfs-tocfile.pic.o ld-tmp/kfs-sra.pic.o ld-tmp/kfs-tar.pic.o ld-tmp/kfs-teefile.pic.o ld-tmp/kfs-buffile.pic.o ld-tmp/kfs-buffile-read.pic.o ld-tmp/kfs-buffile-write.pic.o ld-tmp/kfs-subfile.pic.o ld-tmp/kfs-nullfile.pic.o ld-tmp/kfs-countfile.pic.o ld-tmp/kfs-dir_test.pic.o ld-tmp/kfs-pagefile.pic.o ld-tmp/kfs-pmem.pic.o ld-tmp/kfs-readheadfile.pic.o ld-tmp/kfs-ramfile.pic.o ld-tmp/kfs-extendable-ramfile.pic.o ld-tmp/kfs-quickmount.pic.o ld-tmp/kfs-report.pic.o ld-tmp/kfs-lockfile.pic.o ld-tmp/kfs-remove-file-task.pic.o ld-tmp/kfs-cacheteefile.pic.o ld-tmp/kfs-cacheteefile2.pic.o ld-tmp/kfs-cacheteefile3.pic.o ld-tmp/kfs-rrcachedfile.pic.o ld-tmp/kfs-recorder.pic.o ld-tmp/kfs-logfile.pic.o ld-tmp/kfs-callback_file.pic.o ld-tmp/kfs-poolpages.pic.o ld-tmp/kfs-lru_cache.pic.o ld-tmp/kfs-from_to_namelist.pic.o ld-tmp/kfs-limitfile.pic.o ld-tmp/kfs-appendfile.pic.o ld-tmp/klib-text.pic.o ld-tmp/klib-time.pic.o ld-tmp/klib-utf8.pic.o ld-tmp/klib-iso8859.pic.o ld-tmp/klib-iso8859-1.pic.o ld-tmp/klib-cp1252.pic.o ld-tmp/klib-token.pic.o ld-tmp/klib-symtab.pic.o ld-tmp/klib-container.pic.o ld-tmp/klib-vector.pic.o ld-tmp/klib-namelist.pic.o ld-tmp/klib-all-vdb-version.pic.o ld-tmp/klib-vector_namelist.pic.o ld-tmp/klib-trie.pic.o ld-tmp/klib-pbstree.pic.o ld-tmp/klib-pbstree-impl.nopt.pic.o ld-tmp/klib-pbstree-impl.swap.nopt.pic.o ld-tmp/klib-bstpersist.nopt.pic.o ld-tmp/klib-ptrie.nopt.pic.o ld-tmp/klib-ptpersist.nopt.pic.o ld-tmp/klib-crc32.pic.o ld-tmp/klib-md5.pic.o ld-tmp/klib-misc.pic.o ld-tmp/klib-SHA-32bit.pic.o ld-tmp/klib-SHA-64bit.pic.o ld-tmp/klib-qsort.pic.o ld-tmp/klib-ksort.pic.o ld-tmp/klib-bsearch.pic.o ld-tmp/klib-pack.pic.o ld-tmp/klib-unpack.pic.o ld-tmp/klib-vlen-encode.pic.o ld-tmp/klib-data-buffer.pic.o ld-tmp/klib-refcount.pic.o ld-tmp/klib-printf.pic.o ld-tmp/klib-status-rc-strings.pic.o ld-tmp/klib-status-rc.pic.o ld-tmp/klib-syserrcode.pic.o ld-tmp/klib-syswriter.pic.o ld-tmp/klib-out.pic.o ld-tmp/klib-status.pic.o ld-tmp/klib-log.pic.o ld-tmp/klib-writer.pic.o ld-tmp/klib-syslog.pic.o ld-tmp/klib-systime.pic.o ld-tmp/klib-rc-tbl.pic.o ld-tmp/klib-rc-idx-tbl.pic.o ld-tmp/klib-judy-vector.pic.o ld-tmp/klib-report-klib.pic.o ld-tmp/klib-num-gen.pic.o ld-tmp/klib-progressbar.pic.o ld-tmp/klib-sra-release-version.pic.o ld-tmp/klib-hashtable.pic.o ld-tmp/klib-hashfile.pic.o ld-tmp/klib-btree.pic.o ld-tmp/klib-json.pic.o ld-tmp/klib-json-grammar.pic.o ld-tmp/klib-json-lex.pic.o ld-tmp/klib-base64.pic.o ld-tmp/klib-guid.pic.o ld-tmp/klib-judy-JudyMalloc.n.64.pic.o ld-tmp/klib-judy-JudySL.n.64.pic.o ld-tmp/klib-judy-JudyHS.n.64.pic.o ld-tmp/klib-judy-JudyGet.w.64.pic.o ld-tmp/klib-judy-JudyIns.w.64.pic.o ld-tmp/klib-judy-JudyInsArray.w.64.pic.o ld-tmp/klib-judy-JudyDel.w.64.pic.o ld-tmp/klib-judy-JudyCascade.w.64.pic.o ld-tmp/klib-judy-JudyCount.w.64.pic.o ld-tmp/klib-judy-JudyCreateBranch.w.64.pic.o ld-tmp/klib-judy-JudyDecascade.w.64.pic.o ld-tmp/klib-judy-JudyFirst.w.64.pic.o ld-tmp/klib-judy-JudyFreeArray.w.64.pic.o ld-tmp/klib-judy-JudyInsertBranch.w.64.pic.o ld-tmp/klib-judy-JudyMallocIF.w.64.pic.o ld-tmp/klib-judy-JudyMemActive.w.64.pic.o ld-tmp/klib-judy-JudyMemUsed.w.64.pic.o ld-tmp/klib-judy-JudyNext.w.64.pic.o ld-tmp/klib-judy-JudyNextEmpty.w.64.pic.o ld-tmp/klib-judy-JudyPrev.w.64.pic.o ld-tmp/klib-judy-JudyPrevEmpty.w.64.pic.o ld-tmp/klib-judy-JudyByCountWithDefs.w.64.pic.o ld-tmp/klib-judy-j__udyGet.w.64.pic.o ld-tmp/klib-judy-_JudyLTables.w.64.pic.o ld-tmp/klib-judy-JudyGet.b.64.pic.o ld-tmp/klib-judy-JudyIns.b.64.pic.o ld-tmp/klib-judy-JudyInsArray.b.64.pic.o ld-tmp/klib-judy-JudyDel.b.64.pic.o ld-tmp/klib-judy-JudyCascade.b.64.pic.o ld-tmp/klib-judy-JudyCount.b.64.pic.o ld-tmp/klib-judy-JudyCreateBranch.b.64.pic.o ld-tmp/klib-judy-JudyDecascade.b.64.pic.o ld-tmp/klib-judy-JudyFirst.b.64.pic.o ld-tmp/klib-judy-JudyFreeArray.b.64.pic.o ld-tmp/klib-judy-JudyInsertBranch.b.64.pic.o ld-tmp/klib-judy-JudyMallocIF.b.64.pic.o ld-tmp/klib-judy-JudyMemActive.b.64.pic.o ld-tmp/klib-judy-JudyMemUsed.b.64.pic.o ld-tmp/klib-judy-JudyNext.b.64.pic.o ld-tmp/klib-judy-JudyNextEmpty.b.64.pic.o ld-tmp/klib-judy-JudyPrev.b.64.pic.o ld-tmp/klib-judy-JudyPrevEmpty.b.64.pic.o ld-tmp/klib-judy-JudyByCountWithDefs.b.64.pic.o ld-tmp/klib-judy-j__udyGet.b.64.pic.o ld-tmp/klib-judy-_Judy1Tables.b.64.pic.o ld-tmp/kproc-task.pic.o ld-tmp/kproc-sysmgr.pic.o ld-tmp/kproc-procmgr.pic.o ld-tmp/kproc-systimeout.pic.o ld-tmp/kproc-syslock.pic.o ld-tmp/kproc-systhread.pic.o ld-tmp/kproc-syscond.pic.o ld-tmp/kproc-sem.pic.o ld-tmp/kq-queue.pic.o ld-tmp/kfc-refcount.pic.o ld-tmp/kfc-tstate.pic.o ld-tmp/kfc-sysrsrc.pic.o ld-tmp/kfc-rsrc.pic.o ld-tmp/kfc-vtbl.pic.o ld-tmp/kfc-sysctx.pic.o ld-tmp/kfc-except.pic.o ld-tmp/kfc-xc.pic.o ln -s libncbi-wvdb.a.2.11.0 libncbi-wvdb.a.2 ln -s libncbi-wvdb.a.2 libncbi-wvdb.a ln -s libncbi-wvdb.a libncbi-wvdb-static.a cc -shared -o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libncbi-wvdb.so.2.11.0 -Wl,-soname,libncbi-wvdb.so.2 -L/usr/local/lib -DNDEBUG -m64 -L/usr/local/lib -DNDEBUG -m64 -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -Wl,-whole-archive -lalign-writer -lwaxf -lwsraxf -lwwgsxf -lwvxf -lwsradb -lwvdb -lwkdb -lalign-access -lncbi-bam -lvfs -lcloud -lkxml -lkxfs -lmbedx509 -lmbedtls -lmbedcrypto -lkns -lkfg -lkrypto -lksrch -lkfs -lklib -lkproc -lkq -lkfc -Wl,-no-whole-archive -Wl,-Bdynamic -lz -lbz2 -lpthread -lxml2 -lm ln -s libncbi-wvdb.so.2.11.0 libncbi-wvdb.so.2 ln -s libncbi-wvdb.so.2 libncbi-wvdb.so ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libncbi-ngs-c++.a.2.11.0 ld-tmp/ncbi-ngs-c++-NCBI-NGS.pic.o ln -s libncbi-ngs-c++.a.2.11.0 libncbi-ngs-c++.a.2 ln -s libncbi-ngs-c++.a.2 libncbi-ngs-c++.a ln -s libncbi-ngs-c++.a libncbi-ngs-c++-static.a gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/ncbi-vdb' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ncbi-vdb' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vdb-sqlite' cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sqlite3.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/sqlite3.c -D__mod_name__=libs/vdb-sqlite -D__file_name__=sqlite3 -D__file_ext__=c cc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk -I. -MD -o sqlite3vdb.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite/sqlite3vdb.c -D__mod_name__=libs/vdb-sqlite -D__file_name__=sqlite3vdb -D__file_ext__=c ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libvdb-sqlite.a.2.11.0 sqlite3.pic.o sqlite3vdb.pic.o ld-tmp/ncbi-vdb-align-reader-align_mgr.pic.o 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ld-tmp/ncbi-vdb-klib-judy-JudyByCountWithDefs.b.64.pic.o ld-tmp/ncbi-vdb-klib-judy-j__udyGet.b.64.pic.o ld-tmp/ncbi-vdb-klib-judy-_Judy1Tables.b.64.pic.o ld-tmp/ncbi-vdb-kproc-task.pic.o ld-tmp/ncbi-vdb-kproc-sysmgr.pic.o ld-tmp/ncbi-vdb-kproc-procmgr.pic.o ld-tmp/ncbi-vdb-kproc-systimeout.pic.o ld-tmp/ncbi-vdb-kproc-syslock.pic.o ld-tmp/ncbi-vdb-kproc-systhread.pic.o ld-tmp/ncbi-vdb-kproc-syscond.pic.o ld-tmp/ncbi-vdb-kproc-sem.pic.o ld-tmp/ncbi-vdb-kq-queue.pic.o ld-tmp/ncbi-vdb-kfc-refcount.pic.o ld-tmp/ncbi-vdb-kfc-tstate.pic.o ld-tmp/ncbi-vdb-kfc-sysrsrc.pic.o ld-tmp/ncbi-vdb-kfc-rsrc.pic.o ld-tmp/ncbi-vdb-kfc-vtbl.pic.o ld-tmp/ncbi-vdb-kfc-sysctx.pic.o ld-tmp/ncbi-vdb-kfc-except.pic.o ld-tmp/ncbi-vdb-kfc-xc.pic.o ln -s libvdb-sqlite.a.2.11.0 libvdb-sqlite.a.2 ln -s libvdb-sqlite.a.2 libvdb-sqlite.a ln -s libvdb-sqlite.a libvdb-sqlite-static.a cc -shared -o /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib/libvdb-sqlite.so.2.11.0 -Wl,-soname,libvdb-sqlite.so.2 -L/usr/local/lib -DNDEBUG -m64 -DNDEBUG -m64 sqlite3.pic.o sqlite3vdb.pic.o -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -Wl,-whole-archive -lncbi-vdb -Wl,-no-whole-archive -Wl,-Bdynamic -lpthread -lxml2 -lm ln -s libvdb-sqlite.so.2.11.0 libvdb-sqlite.so.2 ln -s libvdb-sqlite.so.2 libvdb-sqlite.so gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/obj/libs/vdb-sqlite' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/vdb-sqlite' gmake[3]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs' gmake[2]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb' Configuring SRA-TOOLS package checking system type... DragonFly checking machine architecture... x86_64 checking for supported architecture... x86_64 (64 bits) is supported checking for supported OS... DragonFly (DragonFly) is supported checking for supported tool chain... gcc tool chain is supported checking for c++... yes checking for Python 3... no checking whether gcc accepts -Wno-array-bounds... yes checking whether c++ accepts -static-libstdc++... yes checking for QMake... no checking for fuse library... no checking for hdf5 library... no checking for magic library... yes checking for xml2 library... yes checking for ngs-sdk package... includes... /usr/local libraries... /usr/local/lib includes: /usr/local/include libraries: /usr/local/lib checking for ncbi-vdb package source files and build results... includes... /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb src... /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb libraries... no src... libraries... /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib src... includes: /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces sources: /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb libraries: /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib ilibraries: /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib configure: creating 'build/ld.linux.exe_cmd.sh' configure: creating 'build/Makefile.config.DragonFly.x86_64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools build output path: /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel includedir: /usr/local/include bindir: /usr/local/bin libdir: /usr/local/lib CC = gcc -c CPP = c++ configured with: "'--with-ngs-sdk-prefix=/usr/local' '--with-ncbi-vdb-sources=/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb' '--with-xml2-prefix=/usr/local' '--with-hdf5-prefix=/usr/local' 'CC=cc' 'CXX=c++' 'TOOLS=gcc' '--with-ncbi-vdb-build=/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5' '--without-debug' '--prefix=/usr/local' '--build=x86_64-portbld-dragonfly6.5'" SUCCEEDED 00:02:50 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for sra-tools-2.11.0_4 gmake[2]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0' gmake[3]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/shared' gmake[3]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/kqsh' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/util' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat' /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/certs.kfg -> /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/ncbi/certs.kfg /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/kfg/default.kfg -> /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/ncbi/default.kfg /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/shared' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-pileup' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/align-cache' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/util' perl kqsh-thunk.pl -mkdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -ikdb/manager.h -ikdb/database.h -ikdb/table.h -ikdb/column.h -ikdb/index.h -ikdb/meta.h -ikdb/namelist.h \ :KDBManager=mgr :KDatabase=db :KTable=tbl :KColumn=col :KColumnBlob=blob :KIndex=idx :KMetadata=meta :KMDataNode=node -h kqsh-kdb.h -c kqsh-kdb.c || rm kqsh-kdb.c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-stat' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/kar' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/bam-loader' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/driver-tool' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-dump' perl kqsh-thunk.pl -mvdb -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -ivdb/manager.h -ivdb/database.h -ivdb/schema.h -ivdb/table.h -ivdb/cursor.h \ :VDBManager=mgr VSchemaRuntimeTable=srtt VSchema=schema VTypedecl=td VTypedesc=tdesc :VDatabase=db :VTable=tbl :VCursor=curs -h kqsh-vdb.h -c kqsh-vdb.c || rm kqsh-vdb.c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/shared/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/shared/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/shared/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/shared -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o toolkit.vers.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/shared/toolkit.vers.c -D__mod_name__=shared -D__file_name__=toolkit.vers -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-dump' perl kqsh-thunk.pl -msra -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -isra/sradb.h -isra/wsradb.h -isra/sraschema.h \ :SRAMgr=mgr SRANamelist=nmlist :SRATable=tbl SRAColumn=col VDBManager=vmgr -h kqsh-sra.h -c kqsh-sra.c || rm kqsh-sra.c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/fastq-loader' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o bam.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bam.c -D__mod_name__=tools/bam-loader -D__file_name__=bam -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/kqsh' g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o align-cache.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/align-cache.cpp -D__mod_name__=tools/align-cache -D__file_name__=align-cache -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o assembly-statistics.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/assembly-statistics.c -D__mod_name__=tools/sra-stat -D__file_name__=assembly-statistics -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o helper.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache/helper.cpp -D__mod_name__=tools/align-cache -D__file_name__=helper -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sra.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/sra.c -D__mod_name__=tools/sra-stat -D__file_name__=sra -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kar-path.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/kar-path.c -D__mod_name__=tools/kar -D__file_name__=kar-path -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/srapath' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sra-stat.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat/sra-stat.c -D__mod_name__=tools/sra-stat -D__file_name__=sra-stat -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Nothing to be done for '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/all-cmn'. gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/kqsh' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/kqsh' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o crc32sum.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/crc32sum.c -D__mod_name__=tools/util -D__file_name__=crc32sum -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o sratools.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/sratools.cpp -D__mod_name__=tools/driver-tool -D__file_name__=sratools -D__file_ext__=cpp /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o sratools2.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/sratools2.cpp -D__mod_name__=tools/driver-tool -D__file_name__=sratools2 -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kar-args.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/kar-args.c -D__mod_name__=tools/kar -D__file_name__=kar-args -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/sam.c -D__mod_name__=tools/bam-loader -D__file_name__=sam -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o imp_fasterq_dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/imp_fasterq_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_fasterq_dump -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kar.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/kar.c -D__mod_name__=tools/kar -D__file_name__=kar -D__file_ext__=c ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib/libtk-version.a toolkit.vers.pic.o /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o factory.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/factory.c -D__mod_name__=tools/sra-dump -D__file_name__=factory -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-context.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-context.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-context -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kar+util.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/kar+util.c -D__mod_name__=tools/kar -D__file_name__=kar+util -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o test-download.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/test-download.c -D__mod_name__=tools/util -D__file_name__=test-download -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o samview.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/samview.c -D__mod_name__=tools/bam-loader -D__file_name__=samview -D__file_ext__=c gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/shared' gmake[3]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/shared' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o helper.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/helper.c -D__mod_name__=tools/srapath -D__file_name__=helper -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fasta_dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/fasta_dump.c -D__mod_name__=tools/sra-dump -D__file_name__=fasta_dump -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o bam-loader.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bam-loader.c -D__mod_name__=tools/bam-loader -D__file_name__=bam-loader -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kar+meta.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/kar+meta.c -D__mod_name__=tools/kar -D__file_name__=kar+meta -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o imp_fastq_dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/imp_fastq_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_fastq_dump -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o dyn_string.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/dyn_string.c -D__mod_name__=tools/sra-pileup -D__file_name__=dyn_string -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kdb-index.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/kdb-index.c -D__mod_name__=tools/util -D__file_name__=kdb-index -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-coldefs.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-coldefs.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-coldefs -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o line_iter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/line_iter.c -D__mod_name__=tools/srapath -D__file_name__=line_iter -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pacbio-correct.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/pacbio-correct.c -D__mod_name__=tools/util -D__file_name__=pacbio-correct -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o alignment-writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/alignment-writer.c -D__mod_name__=tools/bam-loader -D__file_name__=alignment-writer -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o imp_prefetch.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/imp_prefetch.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_prefetch -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cmdline_cmn.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/cmdline_cmn.c -D__mod_name__=tools/sra-pileup -D__file_name__=cmdline_cmn -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o core.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/core.c -D__mod_name__=tools/sra-dump -D__file_name__=core -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-tools.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-tools.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-tools -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o repository-mgr.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/repository-mgr.c -D__mod_name__=tools/srapath -D__file_name__=repository-mgr -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o schema-replace.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/schema-replace.c -D__mod_name__=tools/util -D__file_name__=schema-replace -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o out_redir.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/out_redir.c -D__mod_name__=tools/sra-pileup -D__file_name__=out_redir -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o imp_sam_dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/imp_sam_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_sam_dump -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o reference-writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/reference-writer.c -D__mod_name__=tools/bam-loader -D__file_name__=reference-writer -D__file_ext__=c g++ -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/align-cache.2.11.0 -DNDEBUG -m64 -L/usr/local/lib align-cache.o helper.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -lload -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-str.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-str.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-str -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o services.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/services.c -D__mod_name__=tools/srapath -D__file_name__=services -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sortreadtest.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/sortreadtest.c -D__mod_name__=tools/util -D__file_name__=sortreadtest -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o imp_sra_pileup.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/imp_sra_pileup.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_sra_pileup -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o spot-assembler.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/spot-assembler.c -D__mod_name__=tools/fastq-loader -D__file_name__=spot-assembler -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sequence-writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/sequence-writer.c -D__mod_name__=tools/bam-loader -D__file_name__=sequence-writer -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cgi_request.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/cgi_request.c -D__mod_name__=tools/srapath -D__file_name__=cgi_request -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-helper.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-helper.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-helper -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o loader-imp.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/loader-imp.c -D__mod_name__=tools/bam-loader -D__file_name__=loader-imp -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o rowwritetest.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/rowwritetest.c -D__mod_name__=tools/util -D__file_name__=rowwritetest -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o common-writer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/common-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-writer -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o imp_srapath.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/imp_srapath.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_srapath -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-too/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/rowwritetest.c: In function 'run': /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/rowwritetest.c:287: warning: "STATUS" redefined #define STATUS(action) (action FORMAT, tablePath, name) In file included from /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/rowwritetest.c:11: /construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/klib/status.h:138: note: this is the location of the previous definition #define STATUS( lvl, ... ) \ ls/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o srapath.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath/srapath.c -D__mod_name__=tools/srapath -D__file_name__=srapath -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sra-stat.2.11.0 -DNDEBUG -m64 -L/usr/local/lib assembly-statistics.o sra.o sra-stat.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -lload -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sequence-writer.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/sequence-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=sequence-writer -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-formats.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-formats.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-formats -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o samview.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/samview.c -D__mod_name__=tools/util -D__file_name__=samview -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o imp_vdb_dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/imp_vdb_dump.cpp -D__mod_name__=tools/driver-tool -D__file_name__=imp_vdb_dump -D__file_ext__=cpp g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o cmdline.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/cmdline.cpp -D__mod_name__=tools/driver-tool -D__file_name__=cmdline -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-redir.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-redir.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-redir -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o common-reader.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/common-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-reader -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-reader.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/fastq-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-reader -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump-fastq.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump-fastq.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump-fastq -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o testld.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/testld.c -D__mod_name__=tools/util -D__file_name__=testld -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o perf_log.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/perf_log.c -D__mod_name__=tools/sra-pileup -D__file_name__=perf_log -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o reref.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/reref.c -D__mod_name__=tools/sra-pileup -D__file_name__=reref -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb_info.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb_info.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb_info -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cg_tools.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/cg_tools.c -D__mod_name__=tools/sra-pileup -D__file_name__=cg_tools -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o txt2kdb.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/txt2kdb.c -D__mod_name__=tools/util -D__file_name__=txt2kdb -D__file_ext__=c ln -s sra-stat.2.11.0 sra-stat.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-grammar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/fastq-grammar.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-grammar -D__file_ext__=c ln -s sra-stat.2 sra-stat gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-stat' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-stat' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-lex.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/fastq-lex.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-lex -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o report_deletes.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/report_deletes.c -D__mod_name__=tools/sra-pileup -D__file_name__=report_deletes -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o config.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/config.cpp -D__mod_name__=tools/driver-tool -D__file_name__=config -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o validate-names4.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/validate-names4.c -D__mod_name__=tools/util -D__file_name__=validate-names4 -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o id2name.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/id2name.c -D__mod_name__=tools/fastq-loader -D__file_name__=id2name -D__file_ext__=c ln -s align-cache.2.11.0 align-cache.2 g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o proc.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/proc.cpp -D__mod_name__=tools/driver-tool -D__file_name__=proc -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ref_regions.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ref_regions.c -D__mod_name__=tools/sra-pileup -D__file_name__=ref_regions -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o mem-bank.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/mem-bank.cpp -D__mod_name__=tools/bam-loader -D__file_name__=mem-bank -D__file_ext__=cpp ln -s align-cache.2 align-cache gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/fastq.c -D__mod_name__=tools/sra-dump -D__file_name__=fastq -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sff.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/sff.c -D__mod_name__=tools/sra-dump -D__file_name__=sff -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/align-cache' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-cache' gcc -o 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-DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kdbmeta.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/kdbmeta.c -D__mod_name__=tools/util -D__file_name__=kdbmeta -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o illumina.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/illumina.c -D__mod_name__=tools/sra-dump -D__file_name__=illumina -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ref_walker_0.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ref_walker_0.c -D__mod_name__=tools/sra-pileup -D__file_name__=ref_walker_0 -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump/vdb-dump.c -D__mod_name__=tools/vdb-dump -D__file_name__=vdb-dump -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o abi.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump/abi.c -D__mod_name__=tools/sra-dump -D__file_name__=abi -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ref_walker.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ref_walker.c -D__mod_name__=tools/sra-pileup -D__file_name__=ref_walker -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o md5cp.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/md5cp.c -D__mod_name__=tools/util -D__file_name__=md5cp -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sg++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 ra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/bio-D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/constructiology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o walk_debug.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/walk_debug.c -D__mod_name__=tools/sra-pileup -D__file_name__=walk_debug -D__file_ext__=c n/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o run-source.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/run-source.cpp -D__mod_name__=tools/driver-tool -D__file_name__=run-source -D__file_ext__=cpp g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o uuid.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/uuid.cpp -D__mod_name__=tools/driver-tool -D__file_name__=uuid -D__file_ext__=cpp g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o service.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/service.cpp -D__mod_name__=tools/driver-tool -D__file_name__=service -D__file_ext__=cpp gmake -C /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json gmake[6]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pileup_counters.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/pileup_counters.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_counters -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pileup_index.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/pileup_index.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_index -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-lock.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/vdb-lock.c -D__mod_name__=tools/util -D__file_name__=vdb-lock -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pileup_indels.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/pileup_indels.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_indels -D__file_ext__=c gmake[7]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/driver-tool/json' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pileup_varcount.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/pileup_varcount.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_varcount -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-loader.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/fastq-loader.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-loader -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o loader-imp.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/loader-imp.c -D__mod_name__=tools/fastq-loader -D__file_name__=loader-imp -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kar+print.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/kar+print.c -D__mod_name__=tools/kar -D__file_name__=kar+print -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-unlock.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/vdb-unlock.c -D__mod_name__=tools/util -D__file_name__=vdb-unlock -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pileup_stat.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/pileup_stat.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_stat -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pileup_v2.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/pileup_v2.c -D__mod_name__=tools/sra-pileup -D__file_name__=pileup_v2 -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kar+.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kar/kar+.c -D__mod_name__=tools/kar -D__file_name__=kar+ -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sra-pileup.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sra-pileup.c -D__mod_name__=tools/sra-pileup -D__file_name__=sra-pileup -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o json.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/json.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json -D__file_ext__=cpp ln -s srapath.2.11.0 srapath.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o PrintOS.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix/PrintOS.c -D__mod_name__=tools/util -D__file_name__=PrintOS -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o common-writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/common-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-writer -D__file_ext__=c ln -s srapath.2 srapath gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/srapath' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/srapath' g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/linux 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-D__file_name__=json-array -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o inputfiles.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/inputfiles.c -D__mod_name__=tools/sra-pileup -D__file_name__=inputfiles -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sequence-writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/sequence-writer.c -D__mod_name__=tools/fastq-loader -D__file_name__=sequence-writer -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o test-sra.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/test-sra.c -D__mod_name__=tools/util -D__file_name__=test-sra -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/fastq-dump.2.11.0 -DNDEBUG -m64 -L/usr/local/lib factory.o fasta_dump.o core.o fastq.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o common-reader.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/common-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=common-reader -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o spot-assembler.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/spot-assembler.c -D__mod_name__=tools/fastq-loader -D__file_name__=spot-assembler -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-reader.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/fastq-reader.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-reader -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/kar.2.11.0 -DNDEBUG -m64 -L/usr/local/lib kar-path.o kar-args.o kar.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-grammar.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/fastq-grammar.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-grammar -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/abi-dump.2.11.0 -DNDEBUG -m64 -L/usr/local/lib factory.o fasta_dump.o core.o abi.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sff-dump.2.11.0 -DNDEBUG -m64 -L/usr/local/lib factory.o fasta_dump.o core.o sff.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-dump.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb-dump-context.o vdb-dump-coldefs.o vdb-dump-tools.o vdb-dump-str.o vdb-dump-helper.o vdb-dump-formats.o vdb-dump-redir.o vdb-dump-fastq.o vdb_info.o vdb-dump.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s fastq-dump.2.11.0 fastq-dump.2 ln -s fastq-dump.2 fastq-dump gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-lex.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/fastq-lex.c -D__mod_name__=tools/fastq-loader -D__file_name__=fastq-lex -D__file_ext__=c ln -s vdb-dump.2.11.0 vdb-dump.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o rna_splice_log.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/rna_splice_log.c -D__mod_name__=tools/sra-pileup -D__file_name__=rna_splice_log -D__file_ext__=c ln -s vdb-dump.2 vdb-dump gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-dump' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-dump' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam-dump-opts.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sam-dump-opts.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-dump-opts -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o id2name.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader/id2name.c -D__mod_name__=tools/fastq-loader -D__file_name__=id2name -D__file_ext__=c ln -s kar.2.11.0 kar.2 gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/kar+meta.2.11.0 -DNDEBUG -m64 -L/usr/local/lib kar+util.o kar+meta.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s kar.2 kar gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam-hdr1.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sam-hdr1.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-hdr1 -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam-hdr.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sam-hdr.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-hdr -D__file_ext__=c ln -s sff-dump.2.11.0 sff-dump.2 g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o low-match-count.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader/low-match-count.cpp -D__mod_name__=tools/bam-loader -D__file_name__=low-match-count -D__file_ext__=cpp ln -s abi-dump.2.11.0 abi-dump.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o matecache.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/matecache.c -D__mod_name__=tools/sra-pileup -D__file_name__=matecache -D__file_ext__=c ln -s abi-dump.2 abi-dump ln -s sff-dump.2 sff-dump gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o read_fkt.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/read_fkt.c -D__mod_name__=tools/sra-pileup -D__file_name__=read_fkt -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam-aligned.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sam-aligned.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-aligned -D__file_ext__=c gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam-unaligned.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sam-unaligned.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-unaligned -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o md_flag.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/md_flag.c -D__mod_name__=tools/sra-pileup -D__file_name__=md_flag -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam-dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sam-dump.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-dump -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/illumina-dump.2.11.0 -DNDEBUG -m64 -L/usr/local/lib factory.o fasta_dump.o core.o illumina.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/rd-filter-redact' ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib/libfastqloader.a spot-assembler.pic.o common-writer.pic.o sequence-writer.pic.o common-reader.pic.o fastq-reader.pic.o fastq-grammar.pic.o fastq-lex.pic.o id2name.pic.o gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sam-dump3.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/sam-dump3.c -D__mod_name__=tools/sra-pileup -D__file_name__=sam-dump3 -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-copy' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o test-read-write-cursor.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/test-read-write-cursor.c -D__mod_name__=tools/rd-filter-redact -D__file_name__=test-read-write-cursor -D__file_ext__=c ln -s kar+meta.2.11.0 kar+meta.2 ln -s kar+meta.2 kar+meta g++ -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/samview.2.11.0 -DNDEBUG -m64 -L/usr/local/lib bam.o sam.o samview.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o read-filter-redact.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact/read-filter-redact.c -D__mod_name__=tools/rd-filter-redact -D__file_name__=read-filter-redact -D__file_ext__=c ln -s illumina-dump.2.11.0 illumina-dump.2 ln -s illumina-dump.2 illumina-dump /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-dump' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-dump' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o context.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/context.c -D__mod_name__=tools/vdb-copy -D__file_name__=context -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o json-object.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/json-object.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-object -D__file_ext__=cpp gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o helper.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/helper.c -D__mod_name__=tools/vdb-copy -D__file_name__=helper -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o json-primitive.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/json-primitive.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-primitive -D__file_ext__=cpp /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/kar+.2.11.0 -DNDEBUG -m64 -L/usr/local/lib kar-path.o kar+args.o kar+print.o kar+util.o kar+.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o coldefs.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/coldefs.c -D__mod_name__=tools/vdb-copy -D__file_name__=coldefs -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-config' g++ -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/bam-load.2.11.0 -DNDEBUG -m64 -L/usr/local/lib bam-loader.o bam.o sam.o alignment-writer.o reference-writer.o sequence-writer.o loader-imp.o mem-bank.o low-match-count.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o get_platform.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/get_platform.c -D__mod_name__=tools/vdb-copy -D__file_name__=get_platform -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/latf-load.2.11.0 -DNDEBUG -m64 -L/usr/local/lib fastq-loader.o loader-imp.o common-writer.o sequence-writer.o common-reader.o spot-assembler.o fastq-reader.o fastq-grammar.o fastq-lex.o id2name.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s samview.2.11.0 samview.2 /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o namelist_tools.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/namelist_tools.c -D__mod_name__=tools/vdb-copy -D__file_name__=namelist_tools -D__file_ext__=c ln -s samview.2 samview g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o configure.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/configure.cpp -D__mod_name__=tools/vdb-config -D__file_name__=configure -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o copy_meta.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/copy_meta.c -D__mod_name__=tools/vdb-copy -D__file_name__=copy_meta -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o type_matcher.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/type_matcher.c -D__mod_name__=tools/vdb-copy -D__file_name__=type_matcher -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-passwd.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/vdb-passwd.c -D__mod_name__=tools/util -D__file_name__=vdb-passwd -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-config.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/vdb-config.c -D__mod_name__=tools/vdb-config -D__file_name__=vdb-config -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o util.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/util.cpp -D__mod_name__=tools/vdb-config -D__file_name__=util -D__file_ext__=cpp ln -s kar+.2.11.0 kar+.2 ln -s kar+.2 kar+ gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/kar' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/kar' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sra-pileup.2.11.0 -DNDEBUG -m64 -L/usr/local/lib dyn_string.o cmdline_cmn.o out_redir.o perf_log.o reref.o cg_tools.o report_deletes.o ref_regions.o 4na_ascii.o ref_walker_0.o ref_walker.o walk_debug.o pileup_counters.o pileup_index.o pileup_indels.o pileup_varcount.o pileup_stat.o pileup_v2.o sra-pileup.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o syspass.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix/syspass.c -D__mod_name__=tools/util -D__file_name__=syspass -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o interactive.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/interactive.cpp -D__mod_name__=tools/vdb-config -D__file_name__=interactive -D__file_ext__=cpp ln -s latf-load.2.11.0 latf-load.2 ln -s latf-load.2 latf-load gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/util -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o make-read-filter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/util/make-read-filter.c -D__mod_name__=tools/util -D__file_name__=make-read-filter -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/fastq-loader' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/fastq-loader' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o redactval.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/redactval.c -D__mod_name__=tools/vdb-copy -D__file_name__=redactval -D__file_ext__=c g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/inc -MD -o json-value.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/json-value.cpp -D__mod_name__=tools/driver-tool/json -D__file_name__=json-value -D__file_ext__=cpp g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json 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-D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o config_values.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/config_values.c -D__mod_name__=tools/vdb-copy -D__file_name__=config_values -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-copy.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/vdb-copy.c -D__mod_name__=tools/vdb-copy -D__file_name__=vdb-copy -D__file_ext__=c gmake[8]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/utf8proc' gmake[8]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure' cp /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy/vdb-copy.kfg /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/ncbi/vdb-copy.kfg ln -s bam-load.2.11.0 bam-load.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -fPIC -std=c99 -Wall -pedantic -DUTF8PROC_EXPORTS -c -o utf8proc.o utf8proc.c ln -s bam-load.2 bam-load gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/bam-loader' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/bam-loader' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-info' rm -f libutf8proc.a ar rs libutf8proc.a utf8proc.o /usr/libexec/binutils234/elf/ar: creating libutf8proc.a /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/read-filter-redact.2.11.0 -DNDEBUG -m64 -L/usr/local/lib read-filter-redact.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -DNDEBUG -m64 -L/usr/local/lib -shared -o libutf8proc.so.2.2.0 -Wl,-soname -Wl,libutf8proc.so.2 utf8proc.o gmake[9]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/driver-tool/secure' gcc: warning: utf8proc.o: linker input file unused because linking not done # FIX .so build so this will work: chmod a-x libutf8proc.so.2.2.0 ln -f -s libutf8proc.so.2.2.0 libutf8proc.so ln -f -s libutf8proc.so.2.2.0 libutf8proc.so.2 gmake[8]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/utf8proc' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/align-info' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/test-read-write-cursor.2.11.0 -DNDEBUG -m64 -L/usr/local/lib test-read-write-cursor.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule g++ -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-config.2.11.0 -DNDEBUG -m64 -L/usr/local/lib configure.o util.o vdb-config.o interactive.o interactive2.o vdb-config-model.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltui_cpp -ltui -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/../inc -MD -o busy.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/busy.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=busy -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-info/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-info/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-info/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-info -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o align-info.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/align-info/align-info.c -D__mod_name__=tools/align-info -D__file_name__=align-info -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/crc32sum -DNDEBUG -m64 -L/usr/local/lib crc32sum.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/../inc -MD -o payload.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/payload.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=payload -D__file_ext__=cpp g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/../inc -MD -o base64.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/base64.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=base64 -D__file_ext__=cpp ln -s sra-pileup.2.11.0 sra-pileup.2 gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat' g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/../inc -MD -o except.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/except.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=except -D__file_ext__=cpp ln -s sra-pileup.2 sra-pileup /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/../inc -MD -o string.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/string.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=string -D__file_ext__=cpp ln -s vdb-config.2.11.0 vdb-config.2 gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/test-download -DNDEBUG -m64 -L/usr/local/lib test-download.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s test-read-write-cursor.2.11.0 test-read-write-cursor.2 gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/qual-recalib-stat' g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/../inc -MD -o atoi.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/atoi.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=atoi -D__file_ext__=cpp gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-copy.2.11.0 -DNDEBUG -m64 -L/usr/local/lib context.o helper.o coldefs.o get_platform.o namelist_tools.o copy_meta.o type_matcher.o redactval.o config_values.o vdb-copy.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s vdb-config.2 vdb-config ln -s test-read-write-cursor.2 test-read-write-cursor gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-config' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-config' g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -std=c++11 -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/../inc -MD -o memset_s.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure/memset_s.cpp -D__mod_name__=tools/driver-tool/secure -D__file_name__=memset_s -D__file_ext__=cpp /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule ln -s read-filter-redact.2.11.0 read-filter-redact.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o namelist_tools.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/namelist_tools.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=namelist_tools -D__file_ext__=c ln -s read-filter-redact.2 read-filter-redact ln -s vdb-copy.2.11.0 vdb-copy.2 gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/constructiogmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/rd-filter-redact' ln -s vdb-copy.2 vdb-copy gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/rd-filter-redact' n/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o context.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/context.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=context -D__file_ext__=c gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt' gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-copy' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-copy' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/align-info.2.11.0 -DNDEBUG -m64 -L/usr/local/lib align-info.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/pacbio-correct.2.11.0 -DNDEBUG -m64 -L/usr/local/lib pacbio-correct.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib/libsecure.a busy.pic.o payload.pic.o base64.pic.o except.pic.o string.pic.o atoi.pic.o memset_s.pic.o gmake[9]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/driver-tool/secure' gmake[8]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/secure' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/kdb-index.2.11.0 -DNDEBUG -m64 -L/usr/local/lib kdb-index.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sortreadtest -DNDEBUG -m64 -L/usr/local/lib sortreadtest.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-decrypt' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o columns.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/columns.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=columns -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ref_exclude.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/ref_exclude.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=ref_exclude -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/prefetch' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o spot_position.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/spot_position.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=spot_position -D__file_ext__=c ln -s align-info.2.11.0 align-info.2 /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/schema-replace.2.11.0 -DNDEBUG -m64 -L/usr/local/lib schema-replace.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o stat_mod_2.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/stat_mod_2.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=stat_mod_2 -D__file_ext__=c ln -s align-info.2 align-info /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/align-info' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/align-info' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o reader.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/reader.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=reader -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-decrypt.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/vdb-decrypt.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=vdb-decrypt -D__file_ext__=c gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kfile-no-q.o /constrgcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/rowwritetest -DNDEBUG -m64 -L/usr/local/lib rowwritetest.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm uction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/kfile-no-q.c -D__mod_name__=tools/prefetch -D__file_name__=kfile-no-q -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/writer.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=writer -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o shared.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/shared.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=shared -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o qual-recalib-stat.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat/qual-recalib-stat.c -D__mod_name__=tools/qual-recalib-stat -D__file_name__=qual-recalib-stat -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/samview -DNDEBUG -m64 -L/usr/local/lib samview.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-encrypt.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt/vdb-encrypt.c -D__mod_name__=tools/vdb-decrypt -D__file_name__=vdb-encrypt -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sam-dump.2.11.0 -DNDEBUG -m64 -L/usr/local/lib inputfiles.o perf_log.o rna_splice_log.o sam-dump-opts.o out_redir.o sam-hdr.o sam-hdr1.o matecache.o read_fkt.o sam-aligned.o sam-unaligned.o md_flag.o cg_tools.o sam-dump.o sam-dump3.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o PrfMain.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/PrfMain.c -D__mod_name__=tools/prefetch -D__file_name__=PrfMain -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-validate' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o prefetch.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/prefetch.c -D__mod_name__=tools/prefetch -D__file_name__=prefetch -D__file_ext__=c ln -s pacbio-correct.2.11.0 pacbio-correct.2 ln -s pacbio-correct.2 pacbio-correct gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o PrfRetrier.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/PrfRetrier.c -D__mod_name__=tools/prefetch -D__file_name__=PrfRetrier -D__file_ext__=c ln -s kdb-index.2.11.0 kdb-index.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-validate.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/vdb-validate.c -D__mod_name__=tools/vdb-validate -D__file_name__=vdb-validate -D__file_ext__=c ln -s kdb-index.2 kdb-index gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/testld -DNDEBUG -m64 -L/usr/local/lib testld.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/cache-mgr' g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o check-corrupt.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate/check-corrupt.cpp -D__mod_name__=tools/vdb-validate -D__file_name__=check-corrupt -D__file_ext__=cpp /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o PrfOutFile.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch/PrfOutFile.c -D__mod_name__=tools/prefetch -D__file_name__=PrfOutFile -D__file_ext__=c ln -s schema-replace.2.11.0 schema-replace.2 ln -s schema-replace.2 schema-replace ln -s sam-dump.2.11.0 sam-dump.2 ln -s sam-dump.2 sam-dump gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-pileup' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/validate-names4 -DNDEBUG -m64 -L/usr/local/lib validate-names4.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-sort' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/txt2kdb -DNDEBUG -m64 -L/usr/local/lib txt2kdb.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-decrypt.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb-decrypt.o shared.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vcf-loader' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/qual-recalib-stat.2.11.0 -DNDEBUG -m64 -L/usr/local/lib namelist_tools.o context.o columns.o ref_exclude.o spot_position.o stat_mod_2.o reader.o writer.o qual-recalib-stat.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-validate.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb-validate.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/prefetch.2.11.0 -DNDEBUG -m64 -L/usr/local/lib kfile-no-q.o PrfMain.o prefetch.o PrfRetrier.o PrfOutFile.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule ln -s vdb-decrypt.2.11.0 vdb-decrypt.2 ln -s vdb-decrypt.2 vdb-decrypt gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/rcexplain.2.11.0 -DNDEBUG -m64 -L/usr/local/lib rcexplain.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vcf-grammar.pic.o -fPIC -D_LIBRARY /construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/vcf-grammar.c -D__mod_name__=tools/vcf-loader -D__file_name__=vcf-grammar -D__file_ext__=c g++ -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/check-corrupt.2.11.0 -DNDEBUG -m64 -L/usr/local/lib check-corrupt.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o dump-blob-boundaries.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/dump-blob-boundaries.c -D__mod_name__=tools/sra-sort -D__file_name__=dump-blob-boundaries -D__file_ext__=c ln -s qual-recalib-stat.2.11.0 qual-recalib-stat.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ 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-I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o caps.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/caps.c -D__mod_name__=tools/sra-sort -D__file_name__=caps -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/qual-recalib-stat' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/qual-recalib-stat' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 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-L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s prefetch.2.11.0 prefetch.2 ln -s prefetch.2 prefetch ln -s vdb-validate.2 vdb-validate gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override 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-D__mod_name__=tools/vcf-loader -D__file_name__=vcf-database -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/prefetch' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/prefetch' gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ 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'/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-validate' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-encrypt.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb-encrypt.o shared.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/md5cp.2.11.0 -DNDEBUG -m64 -L/usr/local/lib md5cp.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so 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/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/membank.c -D__mod_name__=tools/sra-sort -D__file_name__=membank -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o paged-membank.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/paged-membank.c -D__mod_name__=tools/sra-sort -D__file_name__=paged-membank -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cache-mgr/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cache-mgr/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cache-mgr/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cache-mgr -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cache-mgr.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cache-mgr/cache-mgr.c -D__mod_name__=tools/cache-mgr -D__file_name__=cache-mgr -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o paged-mmapbank.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/paged-mmapbank.c -D__mod_name__=tools/sra-sort -D__file_name__=paged-mmapbank -D__file_ext__=c ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib/libjson.a json.pic.o json-array.pic.o json-object.pic.o json-primitive.pic.o json-value.pic.o json-wrapper.pic.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/utf8proc/utf8proc.o ld-tmp/secure-busy.pic.o ld-tmp/secure-payload.pic.o ld-tmp/secure-base64.pic.o ld-tmp/secure-except.pic.o ld-tmp/secure-string.pic.o ld-tmp/secure-atoi.pic.o ld-tmp/secure-memset_s.pic.o gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o except.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/except.c -D__mod_name__=tools/sra-sort -D__file_name__=except -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/test-sra.2.11.0 -DNDEBUG -m64 -L/usr/local/lib PrintOS.o test-sra.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gmake[7]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/driver-tool/json' gmake[6]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/json' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat' ln -s vdb-encrypt.2.11.0 vdb-encrypt.2 ln -s kdbmeta.2.11.0 kdbmeta.2 gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-lock.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb-lock.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s vdb-encrypt.2 vdb-encrypt ar -rc /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib/libvcfloader.a vcf-grammar.pic.o vcf-lex.pic.o vcf-reader.pic.o vcf-database.pic.o ln -s kdbmeta.2 kdbmeta gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o idx-mapping.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/idx-mapping.c -D__mod_name__=tools/sra-sort -D__file_name__=idx-mapping -D__file_ext__=c ln -s md5cp.2.11.0 md5cp.2 gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-decrypt' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-decrypt' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load' gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vcf-loader' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vcf-loader' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/ccextract' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-unlock.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb-unlock.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/make-read-filter.2.11.0 -DNDEBUG -m64 -L/usr/local/lib make-read-filter.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s test-sra.2.11.0 test-sra.2 ln -s test-sra.2 test-sra /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/pacbio-load' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/ccextract' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o map-file.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/map-file.c -D__mod_name__=tools/sra-sort -D__file_name__=map-file -D__file_ext__=c ln -s vdb-lock.2.11.0 vdb-lock.2 gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-passwd.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb-passwd.o syspass.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s vdb-lock.2 vdb-lock gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-load' ln -s vdb-unlock.2.11.0 vdb-unlock.2 gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/fuse' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/copycat' ln -s vdb-unlock.2 vdb-unlock ln -s make-read-filter.2.11.0 make-read-filter.2 gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff' ln -s make-read-filter.2 make-read-filter gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/fasterq-dump' gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/kget' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o col-pair.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/col-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=col-pair -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o copycat.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/copycat.c -D__mod_name__=tools/copycat -D__file_name__=copycat -D__file_ext__=c ln -s vdb-passwd.2.11.0 vdb-passwd.2 gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/kget' ln -s vdb-passwd.2 vdb-passwd gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ccextract/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ccextract/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ccextract/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ccextract -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ccextract.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/ccextract/ccextract.c -D__mod_name__=tools/ccextract -D__file_name__=ccextract -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o row-set.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=row-set -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o helper.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/helper.c -D__mod_name__=tools/fasterq-dump -D__file_name__=helper -D__file_ext__=c ln -s md5cp.2 md5cp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o temp_dir.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/temp_dir.c -D__mod_name__=tools/fasterq-dump -D__file_name__=temp_dir -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o pstring.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/pstring.c -D__mod_name__=tools/sra-load -D__file_name__=pstring -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/util' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/util' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construcgmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql' tion/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o progress_thread.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/progress_thread.c -D__mod_name__=tools/fasterq-dump -D__file_name__=progress_thread -D__file_ext__=c NOTE - pacbio-load cannot be built: It requires our internal library 'libkdf5' which requires 'libhdf5' and its development headers. gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/pacbio-load' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cleanup_task.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/cleanup_task.c -D__mod_name__=tools/fasterq-dump -D__file_name__=cleanup_task -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o index.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/index.c -D__mod_name__=tools/fasterq-dump -D__file_name__=index -D__file_ext__=c gmake[4]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load' gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o simple-row-set.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/simple-row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=simple-row-set -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o lookup_writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/lookup_writer.c -D__mod_name__=tools/fasterq-dump -D__file_name__=lookup_writer -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o lookup_reader.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/lookup_reader.c -D__mod_name__=tools/fasterq-dump -D__file_name__=lookup_reader -D__file_ext__=c NOTE - remote-fuser cannot be built: it requires 'fuse' library and its development headers. gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/fuse' /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o file_printer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/file_printer.c -D__mod_name__=tools/fasterq-dump -D__file_name__=file_printer -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sorter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/sorter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=sorter -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o merge_sorter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/merge_sorter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=merge_sorter -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-sql' gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/cg-load' gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o mapping-row-set.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/mapping-row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=mapping-row-set -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ccfileformat.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/ccfileformat.c -D__mod_name__=tools/copycat -D__file_name__=ccfileformat -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cmn_iter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/cmn_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=cmn_iter -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o raw_read_iter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/raw_read_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=raw_read_iter -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cccat.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/cccat.c -D__mod_name__=tools/copycat -D__file_name__=cccat -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb_shell.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/vdb_shell.c -D__mod_name__=tools/vdb-sql -D__file_name__=vdb_shell -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cg-load.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/cg-load.c -D__mod_name__=tools/cg-load -D__file_name__=cg-load -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kget/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kget/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kget/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/kget -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o kget.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/kget/kget.c -D__mod_name__=tools/kget -D__file_name__=kget -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq_iter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/fastq_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=fastq_iter -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o special_iter.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/special_iter.c -D__mod_name__=tools/fasterq-dump -D__file_name__=special_iter -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastconv.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql/fastconv.c -D__mod_name__=tools/vdb-sql -D__file_name__=fastconv -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sorting-row-set.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/sorting-row-set.c -D__mod_name__=tools/sra-sort -D__file_name__=sorting-row-set -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o join.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/join.c -D__mod_name__=tools/fasterq-dump -D__file_name__=join -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-diff' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o tbl_join.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/tbl_join.c -D__mod_name__=tools/fasterq-dump -D__file_name__=tbl_join -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o join_results.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/join_results.c -D__mod_name__=tools/fasterq-dump -D__file_name__=join_results -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cctree.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/cctree.c -D__mod_name__=tools/copycat -D__file_name__=cctree -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/ccextract.2.11.0 -DNDEBUG -m64 -L/usr/local/lib ccextract.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lkxfs -lkxml -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o temp_registry.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/temp_registry.c -D__mod_name__=tools/fasterq-dump -D__file_name__=temp_registry -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o namelist_tools.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/namelist_tools.c -D__mod_name__=tools/vdb-diff -D__file_name__=namelist_tools -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o copy_machine.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/copy_machine.c -D__mod_name__=tools/fasterq-dump -D__file_name__=copy_machine -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o coldefs.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/coldefs.c -D__mod_name__=tools/vdb-diff -D__file_name__=coldefs -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-diff-context.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/vdb-diff-context.c -D__mod_name__=tools/vdb-diff -D__file_name__=vdb-diff-context -D__file_ext__=c gmake[5]: Entering directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/ngs-pileup' gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o meta-pair.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/meta-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=meta-pair -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cctree-dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/cctree-dump.c -D__mod_name__=tools/copycat -D__file_name__=cctree-dump -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cctar.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/cctar.c -D__mod_name__=tools/copycat -D__file_name__=cctar -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o cmn.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/cmn.c -D__mod_name__=tools/vdb-diff -D__file_name__=cmn -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o common-xml.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/common-xml.c -D__mod_name__=tools/sra-load -D__file_name__=common-xml -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ccsra.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/ccsra.c -D__mod_name__=tools/copycat -D__file_name__=ccsra -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o row_by_row.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/row_by_row.c -D__mod_name__=tools/vdb-diff -D__file_name__=row_by_row -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/kget.2.11.0 -DNDEBUG -m64 -L/usr/local/lib kget.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/vdb-sql.2.11.0 -DNDEBUG -m64 -L/usr/local/lib vdb_shell.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lvdb-sqlite -lngs -Wl,-Bdynamic -lz -lbz2 -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o concatenator.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/concatenator.c -D__mod_name__=tools/fasterq-dump -D__file_name__=concatenator -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o col_by_col.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/col_by_col.c -D__mod_name__=tools/vdb-diff -D__file_name__=col_by_col -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o experiment-xml.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/experiment-xml.c -D__mod_name__=tools/sra-load -D__file_name__=experiment-xml -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ccsubchunk.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/ccsubchunk.c -D__mod_name__=tools/copycat -D__file_name__=ccsubchunk -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/fastconv -DNDEBUG -m64 -L/usr/local/lib fastconv.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp-norsrc -ltk-version -lvdb-sqlite -lngs -Wl,-Bdynamic -lz -lbz2 -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o vdb-diff.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff/vdb-diff.c -D__mod_name__=tools/vdb-diff -D__file_name__=vdb-diff -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ccfile.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/copycat/ccfile.c -D__mod_name__=tools/copycat -D__file_name__=ccfile -D__file_ext__=c /construction/biology/sra-tools/sra-tools-2.11.0/build/Makefile.config.DragonFly.x86_64:111: target '/usr/local/lib' given more than once in the same rule gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o run-xml.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/run-xml.c -D__mod_name__=tools/sra-load -D__file_name__=run-xml -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fasterq-dump.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump/fasterq-dump.c -D__mod_name__=tools/fasterq-dump -D__file_name__=fasterq-dump -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/cache-mgr.2.11.0 -DNDEBUG -m64 -L/usr/local/lib cache-mgr.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -I /construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-c++ -MD -o ngs-pileup.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/ngs-pileup.cpp -D__mod_name__=tools/ngs-pileup -D__file_name__=ngs-pileup -D__file_ext__=cpp ln -s ccextract.2.11.0 ccextract.2 ln -s ccextract.2 ccextract g++ -c -std=c++11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -I /construction/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-c++ -MD -o main.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup/main.cpp -D__mod_name__=tools/ngs-pileup -D__file_name__=main -D__file_ext__=cpp gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o loader-file.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/loader-file.c -D__mod_name__=tools/sra-load -D__file_name__=loader-file -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/ccextract' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/ccextract' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o loader-fmt.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/loader-fmt.c -D__mod_name__=tools/sra-load -D__file_name__=loader-fmt -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o dir-pair.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/dir-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=dir-pair -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o factory-evidence-intervals.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/factory-evidence-intervals.c -D__mod_name__=tools/cg-load -D__file_name__=factory-evidence-intervals -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o factory-evidence-dnbs.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/factory-evidence-dnbs.c -D__mod_name__=tools/cg-load -D__file_name__=factory-evidence-dnbs -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sra-writer.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/sra-writer.c -D__mod_name__=tools/sra-load -D__file_name__=sra-writer -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o loader.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/loader.c -D__mod_name__=tools/sra-load -D__file_name__=loader -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o factory-mappings.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/factory-mappings.c -D__mod_name__=tools/cg-load -D__file_name__=factory-mappings -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o tbl-pair.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/tbl-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=tbl-pair -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o writer-illumina.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/writer-illumina.c -D__mod_name__=tools/sra-load -D__file_name__=writer-illumina -D__file_ext__=c ln -s cache-mgr.2.11.0 cache-mgr.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o writer-454.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/writer-454.c -D__mod_name__=tools/sra-load -D__file_name__=writer-454 -D__file_ext__=c ln -s vdb-sql.2.11.0 vdb-sql.2 ln -s cache-mgr.2 cache-mgr ln -s vdb-sql.2 vdb-sql gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/cache-mgr' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/cache-mgr' ln -s kget.2.11.0 kget.2 gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o factory-tag-lfr.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/factory-tag-lfr.c -D__mod_name__=tools/cg-load -D__file_name__=factory-tag-lfr -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-sql' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-sql' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o writer-ion-torrent.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/writer-ion-torrent.c -D__mod_name__=tools/sra-load -D__file_name__=writer-ion-torrent -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o factory-reads.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/factory-reads.c -D__mod_name__=tools/cg-load -D__file_name__=factory-reads -D__file_ext__=c ln -s kget.2 kget gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o fastq-fmt.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/fastq-fmt.c -D__mod_name__=tools/sra-load -D__file_name__=fastq-fmt -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/kget' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/kget' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o f1_5.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/f1_5.c -D__mod_name__=tools/cg-load -D__file_name__=f1_5 -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/fasterq-dump.2.11.0 -DNDEBUG -m64 -L/usr/local/lib helper.o temp_dir.o progress_thread.o cleanup_task.o index.o lookup_writer.o lookup_reader.o file_printer.o merge_sorter.o sorter.o cmn_iter.o raw_read_iter.o special_iter.o fastq_iter.o join.o tbl_join.o join_results.o temp_registry.o copy_machine.o concatenator.o fasterq-dump.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o db-pair.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/db-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=db-pair -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o f1_3.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/f1_3.c -D__mod_name__=tools/cg-load -D__file_name__=f1_3 -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 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f1_7.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/f1_7.c -D__mod_name__=tools/cg-load -D__file_name__=f1_7 -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd 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-lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux 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g++ -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/ngs-pileup.2.11.0 -DNDEBUG -m64 -L/usr/local/lib ngs-pileup.o main.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -lncbi-ngs-c++ -lngs-c++ -lngs -lncbi-vdb-static -ltk-version -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm -tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o absolid-fmt.o 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-I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o writer-evidence-dnbs.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/writer-evidence-dnbs.c -D__mod_name__=tools/cg-load -D__file_name__=writer-evidence-dnbs -D__file_ext__=c gcc -c -std=c11 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-I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o writer-evidence-intervals.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/writer-evidence-intervals.c -D__mod_name__=tools/cg-load -D__file_name__=writer-evidence-intervals -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o writer-seq.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load/writer-seq.c -D__mod_name__=tools/cg-load -D__file_name__=writer-seq -D__file_ext__=c ln -s fasterq-dump.2.11.0 fasterq-dump.2 ln -s fasterq-dump.2 fasterq-dump gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o helicos-fmt.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/helicos-fmt.c -D__mod_name__=tools/sra-load -D__file_name__=helicos-fmt -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o poslen-col-pair.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/poslen-col-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=poslen-col-pair -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/fasterq-dump' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/fasterq-dump' gcc -c -std=c11 -DNDEBUG -m64 -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load/linux 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/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/copycat.2.11.0 -DNDEBUG -m64 -L/usr/local/lib copycat.o ccfileformat.o cccat.o cctree.o cctree-dump.o cctar.o ccsra.o ccsubchunk.o ccfile.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-vdb -lkff -lmagic -llzma -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o ref-alignid-col.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/ref-alignid-col.c -D__mod_name__=tools/sra-sort -D__file_name__=ref-alignid-col -D__file_ext__=c ln -s ngs-pileup.2.11.0 ngs-pileup.2 gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/cg-load.2.11.0 -DNDEBUG -m64 -L/usr/local/lib cg-load.o factory-evidence-intervals.o factory-evidence-dnbs.o factory-mappings.o factory-reads.o factory-tag-lfr.o f1_3.o f1_5.o f1_7.o f2_0.o f2_2.o f2_4.o f2_5.o file.o file-version-factory.o formats.o writer-algn.o writer-evidence-dnbs.o writer-evidence-intervals.o writer-seq.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s ngs-pileup.2 ngs-pileup gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/ngs-pileup' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/ngs-pileup' ln -s vdb-diff.2.11.0 vdb-diff.2 ln -s copycat.2.11.0 copycat.2 ln -s vdb-diff.2 vdb-diff gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/vdb-diff' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/vdb-diff' ln -s copycat.2 copycat gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux 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-L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -lkxfs -lkxml -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o id-mapper-col.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/id-mapper-col.c -D__mod_name__=tools/sra-sort -D__file_name__=id-mapper-col -D__file_ext__=c ln -s cg-load.2.11.0 cg-load.2 gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/abi-load.2.11.0 -DNDEBUG -m64 -L/usr/local/lib pstring.o common-xml.o experiment-xml.o run-xml.o loader-file.o loader-fmt.o sra-writer.o loader.o writer-absolid.o absolid-fmt.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -lkxfs -lkxml -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s cg-load.2 cg-load gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/cg-load' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/cg-load' gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sff-load.2.11.0 -DNDEBUG -m64 -L/usr/local/lib pstring.o common-xml.o experiment-xml.o run-xml.o loader-file.o loader-fmt.o sra-writer.o loader.o writer-454.o writer-ion-torrent.o sff-fmt.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -lkxfs -lkxml -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 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-L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -lkxfs -lkxml -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/helicos-load.2.11.0 -DNDEBUG -m64 -L/usr/local/lib pstring.o common-xml.o experiment-xml.o run-xml.o loader-file.o loader-fmt.o sra-writer.o loader.o writer-helicos.o helicos-fmt.o 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-L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -lkxfs -lkxml -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s illumina-load.2.11.0 illumina-load.2 ln -s illumina-load.2 illumina-load gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o run.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/run.c -D__mod_name__=tools/sra-sort -D__file_name__=run -D__file_ext__=c gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/srf-load.2.11.0 -DNDEBUG -m64 -L/usr/local/lib pstring.o common-xml.o experiment-xml.o run-xml.o loader-file.o loader-fmt.o sra-writer.o loader.o srf.o srf-fmt.o writer-illumina.o ztr-illumina.o srf-illumina.o writer-absolid.o ztr-absolid.o ztr-huffman.o srf-absolid.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lload -lncbi-wvdb -lkxfs -lkxml -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s abi-load.2.11.0 abi-load.2 ln -s fastq-load.2.11.0 fastq-load.2 ln -s abi-load.2 abi-load ln -s fastq-load.2 fastq-load gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o sra-sort.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/sra-sort.c -D__mod_name__=tools/sra-sort -D__file_name__=sra-sort -D__file_ext__=c ln -s sff-load.2.11.0 sff-load.2 ln -s sff-load.2 sff-load ln -s srf-load.2.11.0 srf-load.2 gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o xcheck-ref-align.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/xcheck-ref-align.c -D__mod_name__=tools/sra-sort -D__file_name__=xcheck-ref-align -D__file_ext__=c ln -s srf-load.2 srf-load ln -s helicos-load.2.11.0 helicos-load.2 ln -s pacbio-loadxml.2.11.0 pacbio-loadxml.2 ln -s helicos-load.2 helicos-load ln -s pacbio-loadxml.2 pacbio-loadxml gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o csra-tbl.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/csra-tbl.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-tbl -D__file_ext__=c gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-load' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-load' gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o csra-pair.o /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/csra-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-pair -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o csra-tbl.cg.o -DSEQUENCE_BEFORE_SECONDARY=0 /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/csra-tbl.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-tbl -D__file_ext__=c gcc -c -std=c11 -DNDEBUG -m64 -std=gnu99 -fgnu89-inline -DBSD -DUNIX -D_REENTRANT -D_FILE_OFFSET_BITS=64 -DPKGNAME=bsd64 -D_ARCH_BITS=__SIZEOF_POINTER__*__CHAR_BIT__ -DLIBPREFIX=lib -DSHLIBEXT=so -I/construction/biology/sra-tools/sra-tools-2.11.0/interfaces/override -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc/x86_64 -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/cc/gcc -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/bsd -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/linux -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/os/unix -I/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/ext -I/usr/local/include -I. -MD -o csra-pair.cg.o -DSEQUENCE_BEFORE_SECONDARY=0 /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort/csra-pair.c -D__mod_name__=tools/sra-sort -D__file_name__=csra-pair -D__file_ext__=c LD = @ /construction/biology/sra-tools/sra-tools-2.11.0/build/ld.sh bsd x86_64 gcc --build rel --ldflags -DNDEBUG -m64 -L/usr/local/lib --objx o --shlx so --libx a -MD --srcdir /construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort --bindir /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib:/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib:/usr/local/lib:/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib:/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib DBB_LIB = -sncbi-vdb gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/dump-blob-boundaries -DNDEBUG -m64 -L/usr/local/lib dump-blob-boundaries.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lncbi-vdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sra-sort.2.11.0 -DNDEBUG -m64 -L/usr/local/lib caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.o csra-pair.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm gcc -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sra-sort-cg.2.11.0 -DNDEBUG -m64 -L/usr/local/lib caps.o mem.o membank.o paged-membank.o paged-mmapbank.o except.o idx-mapping.o map-file.o col-pair.o row-set.o simple-row-set.o mapping-row-set.o sorting-row-set.o meta-pair.o dir-pair.o tbl-pair.o db-pair.o glob-poslen.o poslen-col-pair.o ref-alignid-col.o buff-writer.o id-mapper-col.o capture-first-half-aligned.o run.o sra-sort.o xcheck-ref-align.o csra-tbl.cg.o csra-pair.cg.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lkapp -ltk-version -lncbi-wvdb -Wl,-Bdynamic -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s sra-sort.2.11.0 sra-sort.2 ln -s sra-sort.2 sra-sort ln -s sra-sort-cg.2.11.0 sra-sort-cg.2 ln -s sra-sort-cg.2 sra-sort-cg gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/sra-sort' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/sra-sort' /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/cmdline.cpp: In function 'void ncbi::convertString(T&, const ncbi::String&) [with T = double]': /construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool/cmdline.cpp:227:52: note: #pragma message: TBD - check for NaN, INF, etc. #pragma message ( "TBD - check for NaN, INF, etc." ) ^ g++ -o /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/bin/sratools.2.11.0 -DNDEBUG -m64 -L/usr/local/lib sratools.o sratools2.o imp_fasterq_dump.o imp_fastq_dump.o imp_prefetch.o imp_sam_dump.o imp_sra_pileup.o imp_srapath.o imp_vdb_dump.o cmdline.o config.o proc.o run-source.o uuid.o service.o -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/ilib -L/usr/local/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/lib -L/construction/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/amd64-portbld-freebsd6.5/ncbi-vdb/DragonFly/gcc/x86_64/rel/ilib -Wl,-Bstatic -lncbi-vdb -ljson -Wl,-Bdynamic -lepoll-shim -Wl,-Bstatic -lmbedtls -Wl,-Bdynamic -lexecinfo -lz -lbz2 -lpthread -lepoll-shim -lxml2 -lbz2 -lz -lm ln -s sratools.2.11.0 sratools.2 ln -s sratools.2 sratools gmake[5]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/x86_64-portbld-dragonfly6.5/sra-tools/DragonFly/gcc/x86_64/rel/obj/tools/driver-tool' gmake[4]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools/driver-tool' gmake[3]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0/tools' gmake[2]: Leaving directory '/construction/biology/sra-tools/sra-tools-2.11.0' SUCCEEDED 00:00:16 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for sra-tools-2.11.0_4 ===> Generating temporary packing list cd /construction/biology/sra-tools/sra-tools-2.11.0/x86_64-*/sra-tools/DragonFly/gcc/x86_64/rel/bin && for f in `ls *.2.11.0`; do install -s -m 555 ${f} /construction/biology/sra-tools/stage/usr/local/bin/`basename ${f%%.2.11.0}`; done ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for sra-tools-2.11.0_4 file sizes/checksums [57]: 0% file sizes/checksums [57]: 100% Service unavailablepacking files [57]: 0% packing files [57]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:54 TOTAL TIME 00:04:38