------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/biology/py-pywgsim XDG_CONFIG_HOME=/construction/biology/py-pywgsim XDG_CACHE_HOME=/construction/biology/py-pywgsim/.cache HOME=/construction/biology/py-pywgsim TMPDIR="/tmp" PATH=/construction/biology/py-pywgsim/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-pywgsim/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-pywgsim XDG_CONFIG_HOME=/construction/biology/py-pywgsim XDG_CACHE_HOME=/construction/biology/py-pywgsim/.cache HOME=/construction/biology/py-pywgsim TMPDIR="/tmp" PATH=/construction/biology/py-pywgsim/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-pywgsim/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/py-pywgsim/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/pywgsim" EXAMPLESDIR="share/examples/pywgsim" DATADIR="share/pywgsim" WWWDIR="www/pywgsim" ETCDIR="etc/pywgsim" SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/pywgsim DOCSDIR=/usr/local/share/doc/pywgsim EXAMPLESDIR=/usr/local/share/examples/pywgsim WWWDIR=/usr/local/www/pywgsim ETCDIR=/usr/local/etc/pywgsim SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/py39-argparse-1.4.0.pkg Installing /packages/All/py39-plac-1.3.5.pkg SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-pywgsim-0.5.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-pywgsim-0.5.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-pywgsim-0.5.2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-pywgsim-0.5.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-pywgsim-0.5.2 for building => SHA256 Checksum OK for pywgsim-0.5.2.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-pywgsim-0.5.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-pywgsim-0.5.2 for building ===> Extracting for py39-pywgsim-0.5.2 => SHA256 Checksum OK for pywgsim-0.5.2.tar.gz. Extracted Memory Use: 0.40M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-pywgsim-0.5.2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-pywgsim-0.5.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pywgsim-0.5.2 depends on file: /usr/local/bin/python3.9 - found ===> py39-pywgsim-0.5.2 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-pywgsim-0.5.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pywgsim-0.5.2 depends on file: /usr/local/bin/python3.9 - found ===> py39-pywgsim-0.5.2 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-pywgsim-0.5.2 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-pywgsim-0.5.2 running build running build_py creating build creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim copying pywgsim/main.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim copying pywgsim/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim copying pywgsim/__main__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim running egg_info writing pywgsim.egg-info/PKG-INFO writing dependency_links to pywgsim.egg-info/dependency_links.txt writing entry points to pywgsim.egg-info/entry_points.txt writing requirements to pywgsim.egg-info/requires.txt writing top-level names to pywgsim.egg-info/top_level.txt reading manifest file 'pywgsim.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pywgsim.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pywgsim.src' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pywgsim.src' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pywgsim.src' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pywgsim.src' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying pywgsim/wgsim_lib.c -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim copying pywgsim/wgsim_lib.pyx -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim creating build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src copying pywgsim/src/Makefile -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src copying pywgsim/src/kseq.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src copying pywgsim/src/wgsim_mod.c -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src copying pywgsim/src/wgsim_mod.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src running build_ext building 'pywgsim.wgsim' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/pywgsim creating build/temp.dragonfly-6.5-x86_64-cpython-39/pywgsim/src cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ipywgsim/src -I/usr/local/include/python3.9 -c pywgsim/src/wgsim_mod.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/pywgsim/src/wgsim_mod.o In file included from pywgsim/src/wgsim_mod.c:40: pywgsim/src/wgsim_mod.c: In function 'ks_getuntil': pywgsim/src/kseq.h:120:24: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare] if (str->m - str->l < i - ks->begin + 1) { \ ^ pywgsim/src/kseq.h:145:2: note: in expansion of macro '__KS_GETUNTIL' __KS_GETUNTIL(__read, __bufsize) ^~~~~~~~~~~~~ pywgsim/src/kseq.h:220:2: note: in expansion of macro 'KSTREAM_INIT' KSTREAM_INIT(type_t, __read, 4096) \ ^~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:41:1: note: in expansion of macro 'KSEQ_INIT' KSEQ_INIT(gzFile, gzread) ^~~~~~~~~ pywgsim/src/wgsim_mod.c: In function 'wgsim_mut_diref': pywgsim/src/wgsim_mod.c:114:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'const long unsigned int'} [-Wsign-compare] for (i = 0; i != ks->seq.l; ++i) { ^~ pywgsim/src/wgsim_mod.c: In function 'wgsim_print_mutref': pywgsim/src/wgsim_mod.c:170:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'const long unsigned int'} [-Wsign-compare] for (i = 0; i != ks->seq.l; ++i) { ^~ pywgsim/src/wgsim_mod.c:192:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'const long unsigned int'} [-Wsign-compare] for (j = i; j < ks->seq.l && hap1->s[j] == hap2->s[j] && (hap1->s[j]&mutmsk) == DELETE; ++j) ^ pywgsim/src/wgsim_mod.c:221:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'const long unsigned int'} [-Wsign-compare] for (j = i; j < ks->seq.l && hap1->s[j] != hap2->s[j] && (hap1->s[j]&mutmsk) == DELETE; ++j) ^ pywgsim/src/wgsim_mod.c:231:21: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'const long unsigned int'} [-Wsign-compare] for (j = i; j < ks->seq.l && hap1->s[j] != hap2->s[j] && (hap2->s[j]&mutmsk) == DELETE; ++j) ^ pywgsim/src/wgsim_mod.c: In function 'wgsim_core': pywgsim/src/wgsim_mod.c:341:28: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] } while (pos < 0 || pos >= ks->seq.l || pos + d - 1 >= ks->seq.l); ^~ pywgsim/src/wgsim_mod.c:341:56: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] } while (pos < 0 || pos >= ks->seq.l || pos + d - 1 >= ks->seq.l); ^~ pywgsim/src/wgsim_mod.c:358:61: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (i = (start), k = 0, ext_coor[x] = -10; i >= 0 && i < ks->seq.l && k < s[x]; iter) { \ ^ pywgsim/src/wgsim_mod.c:379:4: note: in expansion of macro '__gen_read' __gen_read(0, pos, ++i); ^~~~~~~~~~ pywgsim/src/wgsim_mod.c:358:61: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for (i = (start), k = 0, ext_coor[x] = -10; i >= 0 && i < ks->seq.l && k < s[x]; iter) { \ ^ pywgsim/src/wgsim_mod.c:380:4: note: in expansion of macro '__gen_read' __gen_read(1, pos + d - 1, --i); ^~~~~~~~~~ pywgsim/src/wgsim_mod.c: In function 'wgsim_print_mutref': pywgsim/src/wgsim_mod.c:195:7: warning: 'strncat' specified bound 1 equals source length [-Wstringop-overflow=] strncat(alt, &"-"[0], 1); ^~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:200:21: warning: 'strncat' specified bound 1 equals source length [-Wstringop-overflow=] strncat(ref, &"-"[0], 1); ^~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:224:7: warning: 'strncat' specified bound 1 equals source length [-Wstringop-overflow=] strncat(alt, &"-"[0], 1); ^~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:230:7: warning: 'strncat' specified bound 1 equals source length [-Wstringop-overflow=] strncat(ref, &"-"[0], 1); ^~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:237:6: warning: 'strncat' specified bound 1 equals source length [-Wstringop-overflow=] strncat(ref, &"-"[0], 1); ^~~~~~~~~~~~~~~~~~~~~~~~ pywgsim/src/wgsim_mod.c:251:6: warning: 'strncat' specified bound 1 equals source length [-Wstringop-overflow=] strncat(ref, &"-"[0], 1); ^~~~~~~~~~~~~~~~~~~~~~~~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ipywgsim/src -I/usr/local/include/python3.9 -c pywgsim/wgsim_lib.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/pywgsim/wgsim_lib.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-6.5-x86_64-cpython-39/pywgsim/src/wgsim_mod.o build/temp.dragonfly-6.5-x86_64-cpython-39/pywgsim/wgsim_lib.o -L/usr/local/lib -lz -lm -o build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/wgsim.cpython-39.so SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-pywgsim-0.5.2 depends on package: py39-plac>=0 - found ===> py39-pywgsim-0.5.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pywgsim-0.5.2 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-pywgsim-0.5.2 ===> py39-pywgsim-0.5.2 depends on package: py39-plac>=0 - found ===> py39-pywgsim-0.5.2 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pywgsim-0.5.2 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing pywgsim.egg-info/PKG-INFO writing dependency_links to pywgsim.egg-info/dependency_links.txt writing entry points to pywgsim.egg-info/entry_points.txt writing requirements to pywgsim.egg-info/requires.txt writing top-level names to pywgsim.egg-info/top_level.txt reading manifest file 'pywgsim.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'pywgsim.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pywgsim.src' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pywgsim.src' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pywgsim.src' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pywgsim.src' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext running install_lib creating /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9 creating /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages creating /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/main.py -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/__init__.py -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/__main__.py -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/wgsim_lib.c -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/wgsim_lib.pyx -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim creating /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/src copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src/Makefile -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/src copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src/kseq.h -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/src copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src/wgsim_mod.c -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/src copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/src/wgsim_mod.h -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/src copying build/lib.dragonfly-6.5-x86_64-cpython-39/pywgsim/wgsim.cpython-39.so -> /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim byte-compiling /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/main.py to main.cpython-39.pyc byte-compiling /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim/__main__.py to __main__.cpython-39.pyc writing byte-compilation script '/tmp/tmp54y68rhd.py' /usr/local/bin/python3.9 /tmp/tmp54y68rhd.py removing /tmp/tmp54y68rhd.py running install_egg_info Copying pywgsim.egg-info to /construction/biology/py-pywgsim/stage/usr/local/lib/python3.9/site-packages/pywgsim-0.5.2-py3.9.egg-info running install_scripts Installing pywgsim script to /construction/biology/py-pywgsim/stage/usr/local/bin writing list of installed files to '/construction/biology/py-pywgsim/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python3.9/site-packages/pywgsim/wgsim.cpython-39.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-pywgsim-0.5.2 file sizes/checksums [23]: 0% file sizes/checksums [23]: 100% Service unavailablepacking files [23]: 0% packing files [23]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:17