------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/biology/py-pyrodigal XDG_CONFIG_HOME=/construction/biology/py-pyrodigal XDG_CACHE_HOME=/construction/biology/py-pyrodigal/.cache HOME=/construction/biology/py-pyrodigal TMPDIR="/tmp" PATH=/construction/biology/py-pyrodigal/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-pyrodigal/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-pyrodigal XDG_CONFIG_HOME=/construction/biology/py-pyrodigal XDG_CACHE_HOME=/construction/biology/py-pyrodigal/.cache HOME=/construction/biology/py-pyrodigal TMPDIR="/tmp" PATH=/construction/biology/py-pyrodigal/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-pyrodigal/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/py-pyrodigal/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-pyrodigal" EXAMPLESDIR="share/examples/py39-pyrodigal" DATADIR="share/py39-pyrodigal" WWWDIR="www/py39-pyrodigal" ETCDIR="etc/py39-pyrodigal" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-pyrodigal DOCSDIR=/usr/local/share/doc/py39-pyrodigal EXAMPLESDIR=/usr/local/share/examples/py39-pyrodigal WWWDIR=/usr/local/www/py39-pyrodigal ETCDIR=/usr/local/etc/py39-pyrodigal SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-cython-0.29.35.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/sbin/pkg - found => pyrodigal-2.2.0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/p/pyrodigal/pyrodigal-2.2.0.tar.gz pyrodigal-2.2.0.tar.gz 0% of 2505 kB 0 Bps pyrodigal-2.2.0.tar.gz 2505 kB 13 MBps 00s ===> Fetching all distfiles required by py39-pyrodigal-2.2.0 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-pyrodigal-2.2.0 for building => SHA256 Checksum OK for pyrodigal-2.2.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-pyrodigal-2.2.0 for building ===> Extracting for py39-pyrodigal-2.2.0 => SHA256 Checksum OK for pyrodigal-2.2.0.tar.gz. Extracted Memory Use: 27.89M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-pyrodigal-2.2.0 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-pyrodigal-2.2.0 depends on executable: cython-3.9 - found ===> py39-pyrodigal-2.2.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-pyrodigal-2.2.0 depends on executable: cython-3.9 - found ===> py39-pyrodigal-2.2.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/bin/python3.9 - found ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-pyrodigal-2.2.0 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-pyrodigal-2.2.0 running build running build_py creating build creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/__main__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_version.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/cli.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal creating build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/fasta.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_connection_scorer.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_doctest.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_gene.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_genes.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_mask.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_nodes.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_orf_finder.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_sequence.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/test_training_info.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests creating build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data running egg_info writing pyrodigal.egg-info/PKG-INFO writing dependency_links to pyrodigal.egg-info/dependency_links.txt writing entry points to pyrodigal.egg-info/entry_points.txt writing requirements to pyrodigal.egg-info/requires.txt writing top-level names to pyrodigal.egg-info/top_level.txt reading manifest file 'pyrodigal.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.html' found under directory 'pyrodigal' adding license file 'COPYING' writing manifest file 'pyrodigal.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pyrodigal.cpu_features' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyrodigal.cpu_features' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyrodigal.cpu_features' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyrodigal.cpu_features' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pyrodigal.impl' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyrodigal.impl' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyrodigal.impl' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyrodigal.impl' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pyrodigal.prodigal' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyrodigal.prodigal' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyrodigal.prodigal' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyrodigal.prodigal' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying pyrodigal/_connection.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_connection.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_pyrodigal.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_pyrodigal.pyi -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_pyrodigal.pyx -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_sequence.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_sequence.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/_unicode.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal copying pyrodigal/py.typed -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal creating build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features copying pyrodigal/cpu_features/__init__.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features copying pyrodigal/cpu_features/aarch64.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features copying pyrodigal/cpu_features/arm.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features copying pyrodigal/cpu_features/x86.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features creating build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/__init__.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/avx.c -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/avx.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/avx.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/generic.c -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/generic.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/generic.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/mmx.c -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/mmx.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/mmx.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/neon.c -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/neon.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/neon.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/sse.c -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/sse.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/sse.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl copying pyrodigal/impl/template.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl creating build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/__init__.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/bitmap.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/dprog.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/gene.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/metagenomic.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/node.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/sequence.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/prodigal/training.pxd -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal copying pyrodigal/tests/requirements.txt -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests copying pyrodigal/tests/data/GCF_001457455.1_NCTC11397_genomic.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/GCF_001457455.1_NCTC11397_genomic.tinf_closed.bin -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/KK037166.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/KK037166.meta+mask.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/KK037166.meta.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/KK037166.meta.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/KK037166.single.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/KK037166.single.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.meta+mask.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.meta+mask.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.meta.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.meta.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.single.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/MIIJ01000039.single.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.meta.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.meta.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.meta.gff -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.meta.tsv -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.single.faa.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.single.fna.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data copying pyrodigal/tests/data/SRR492066.training.bin.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data running build_clib generating build/temp.dragonfly-6.5-x86_64-cpython-39/training from vendor/Prodigal/training.c creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/training generating build/temp.dragonfly-6.5-x86_64-cpython-39/libprodigal.a from vendor/Prodigal/bitmap.c, vendor/Prodigal/dprog.c, vendor/Prodigal/gene.c, vendor/Prodigal/metagenomic.c, vendor/Prodigal/node.c, vendor/Prodigal/sequence.c, vendor/Prodigal/training.c building prodigal for dragonfly-6.5-x86_64 with unix compiler generating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/bitmap.o from vendor/Prodigal/bitmap.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/dprog.o from vendor/Prodigal/dprog.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/gene.o from vendor/Prodigal/gene.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor generating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/node.o from vendor/Prodigal/node.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training02.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training02.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training09.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training09.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training03.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training03.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training17.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training17.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training06.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training06.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training21.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training21.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training19.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training19.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training20.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training20.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training13.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training13.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training15.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training15.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training18.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training18.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training04.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training04.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training05.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training05.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training00.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training00.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/build generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training07.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training07.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training16.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training16.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training11.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training11.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal creating build/temp.dragonfly-6.5-x86_64-cpython-39/build generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training23.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training23.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training01.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training01.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training25.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training25.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39 generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training14.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training14.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/sequence.o from vendor/Prodigal/sequence.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39 generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training24.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training24.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training22.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training22.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training creating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training10.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training10.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/metagenomic.o from vendor/Prodigal/metagenomic.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/build cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training13.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training13.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training18.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training18.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training00.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training00.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training22.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training22.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training10.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training10.o creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training08.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training08.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training12.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training12.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training02.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training02.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training03.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training03.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c vendor/Prodigal/node.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/node.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training06.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training06.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training17.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training17.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training20.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training20.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training21.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training21.o creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c vendor/Prodigal/dprog.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/dprog.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training07.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training07.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training11.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training11.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training23.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training23.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training12.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training12.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training05.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training05.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training15.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training15.o creating build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training16.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training16.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training04.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training04.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training14.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training14.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training25.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training25.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c vendor/Prodigal/gene.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/gene.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c vendor/Prodigal/bitmap.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/bitmap.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training01.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training01.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c vendor/Prodigal/metagenomic.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/metagenomic.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training24.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training24.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training19.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training19.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training08.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training08.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c vendor/Prodigal/sequence.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/sequence.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training09.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training09.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training26.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training26.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training26.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training26.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training27.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training27.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training27.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training27.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training28.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training28.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training28.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training28.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training29.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training29.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training29.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training29.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training30.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training30.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training31.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training31.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training30.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training30.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training31.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training31.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training32.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training32.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training32.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training32.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training33.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training33.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training33.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training33.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training34.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training34.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training34.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training34.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training35.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training35.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training35.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training35.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training36.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training36.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training36.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training36.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training37.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training37.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training38.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training38.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training37.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training37.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training38.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training38.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training39.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training39.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training40.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training40.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training39.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training39.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training40.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training40.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training41.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training41.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training41.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training41.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training43.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training43.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training43.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training43.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training42.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training42.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training44.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training44.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training42.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training42.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training44.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training44.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training45.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training45.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training46.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training46.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training45.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training45.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training47.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training47.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training49.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training49.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training49.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training49.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training46.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training46.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training47.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training47.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training48.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training48.c generating build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training50.o from build/temp.dragonfly-6.5-x86_64-cpython-39/training/training50.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training48.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training48.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -Ivendor/Prodigal -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/training/training50.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training50.o vendor/Prodigal/sequence.c: In function 'calc_short_header': vendor/Prodigal/sequence.c:230:16: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] for(i = 0; i < strlen(header); i++) { ^ generating build/temp.dragonfly-6.5-x86_64-cpython-39/libprodigal.a from build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/bitmap.o, build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/dprog.o, build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/gene.o, build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/metagenomic.o, build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/node.o, build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/sequence.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training00.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training01.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training02.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training03.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training04.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training05.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training06.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training07.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training08.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training09.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training10.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training11.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training12.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training13.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training14.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training15.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training16.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training17.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training18.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training19.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training20.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training21.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training22.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training23.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training24.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training25.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training26.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training27.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training28.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training29.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training30.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training31.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training32.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training33.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training34.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training35.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training36.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training37.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training38.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training39.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training40.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training41.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training42.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training43.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training44.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training45.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training46.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training47.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training48.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training49.o, build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training50.o ar rcs build/temp.dragonfly-6.5-x86_64-cpython-39/libprodigal.a build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/bitmap.o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/dprog.o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/gene.o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/metagenomic.o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/node.o build/temp.dragonfly-6.5-x86_64-cpython-39/vendor/Prodigal/sequence.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training00.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training01.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training02.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training03.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training04.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training05.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training06.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training07.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training08.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training09.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training10.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training11.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training12.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training13.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training14.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training15.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training16.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training17.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training18.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training19.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training20.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training21.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training22.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training23.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training24.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training25.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training26.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training27.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training28.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training29.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training30.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training31.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training32.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training33.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training34.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training35.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training36.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training37.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training38.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training39.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training40.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training41.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training42.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training43.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training44.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training45.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training46.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training47.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training48.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training49.o build/temp.dragonfly-6.5-x86_64-cpython-39/build/temp.dragonfly-6.5-x86_64-cpython-39/training/training50.o running build_ext checking whether `PyInterpreterState_GetID` is available cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_getid.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_getid.o -Werror=implicit-function-declaration yes cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -mavx -mavx2 -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.o cc -mavx -mavx2 build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2 checking whether compiler can build AVX2 code... yes, with -mavx -mavx2 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -msse -msse2 -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.o cc -msse -msse2 build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2 checking whether compiler can build SSE2 code... yes, with -msse -msse2 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.o cc build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX checking whether compiler can build MMX code... yes Compiling pyrodigal/_pyrodigal.pyx because it changed. [1/1] Cythonizing pyrodigal/_pyrodigal.pyx building pyrodigal._pyrodigal for dragonfly-6.5-x86_64 with unix compiler generating build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/avx.o from pyrodigal/impl/avx.c creating build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal creating build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -mavx -mavx2 -DCYTHON_WITHOUT_ASSERTIONS=1 -D__AVX2__=1 -Ipyrodigal -Ivendor/Prodigal -I/usr/local/include/python3.9 -c pyrodigal/impl/avx.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/avx.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/sse.o from pyrodigal/impl/sse.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -msse -msse2 -DCYTHON_WITHOUT_ASSERTIONS=1 -D__SSE2__=1 -Ipyrodigal -Ivendor/Prodigal -I/usr/local/include/python3.9 -c pyrodigal/impl/sse.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/sse.o generating build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/mmx.o from pyrodigal/impl/mmx.c cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -D__MMX__=1 -Ipyrodigal -Ivendor/Prodigal -I/usr/local/include/python3.9 -c pyrodigal/impl/mmx.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/mmx.o building 'pyrodigal._pyrodigal' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipyrodigal -Ivendor/Prodigal -I/usr/local/include/python3.9 -c pyrodigal/_pyrodigal.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.o cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -DCYTHON_WITHOUT_ASSERTIONS=1 -Ipyrodigal -Ivendor/Prodigal -I/usr/local/include/python3.9 -c pyrodigal/impl/generic.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/generic.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/generic.o build/temp.dragonfly-6.5-x86_64-cpython-39/libprodigal.a build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/avx.o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/sse.o build/temp.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/mmx.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -lprodigal -o build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.cpython-39.so -mavx -mavx2 running build_ext checking whether `PyInterpreterState_GetID` is available cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_getid.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_getid.o -Werror=implicit-function-declaration yes cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -mavx -mavx2 -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.o cc -mavx -mavx2 build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2 checking whether compiler can build AVX2 code... yes, with -mavx -mavx2 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -msse -msse2 -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.o cc -msse -msse2 build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2 checking whether compiler can build SSE2 code... yes, with -msse -msse2 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.o cc build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX checking whether compiler can build MMX code... yes building pyrodigal._pyrodigal for dragonfly-6.5-x86_64 with unix compiler copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.cpython-39.so -> pyrodigal SUCCEEDED 00:00:58 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-pyrodigal-2.2.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-pyrodigal-2.2.0 ===> py39-pyrodigal-2.2.0 depends on package: py39-setuptools>=63.1.0 - found ===> py39-pyrodigal-2.2.0 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing pyrodigal.egg-info/PKG-INFO writing dependency_links to pyrodigal.egg-info/dependency_links.txt writing entry points to pyrodigal.egg-info/entry_points.txt writing requirements to pyrodigal.egg-info/requires.txt writing top-level names to pyrodigal.egg-info/top_level.txt reading manifest file 'pyrodigal.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.html' found under directory 'pyrodigal' adding license file 'COPYING' writing manifest file 'pyrodigal.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pyrodigal.cpu_features' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyrodigal.cpu_features' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyrodigal.cpu_features' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyrodigal.cpu_features' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pyrodigal.impl' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyrodigal.impl' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyrodigal.impl' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyrodigal.impl' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'pyrodigal.prodigal' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'pyrodigal.prodigal' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'pyrodigal.prodigal' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'pyrodigal.prodigal' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying pyrodigal/_pyrodigal.h -> build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal running build_clib running build_ext checking whether `PyInterpreterState_GetID` is available cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_getid.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_getid.o -Werror=implicit-function-declaration yes cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -mavx -mavx2 -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.o cc -mavx -mavx2 build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_AVX2 checking whether compiler can build AVX2 code... yes, with -mavx -mavx2 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -msse -msse2 -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.o cc -msse -msse2 build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_SSE2 checking whether compiler can build SSE2 code... yes, with -msse -msse2 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.9 -c build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.o cc build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX.o -L/usr/local/lib -Lbuild/temp.dragonfly-6.5-x86_64-cpython-39 -lprodigal -o build/temp.dragonfly-6.5-x86_64-cpython-39/have_MMX checking whether compiler can build MMX code... yes building pyrodigal._pyrodigal for dragonfly-6.5-x86_64 with unix compiler running install_lib creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9 creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.cpython-39.so -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/__init__.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/__main__.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_version.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cli.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/__init__.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/fasta.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_connection_scorer.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_doctest.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_gene.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_genes.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_mask.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_nodes.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_orf_finder.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_sequence.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/test_training_info.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/__init__.py -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/GCF_001457455.1_NCTC11397_genomic.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/GCF_001457455.1_NCTC11397_genomic.tinf_closed.bin -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/KK037166.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/KK037166.meta+mask.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/KK037166.meta.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/KK037166.meta.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/KK037166.single.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/KK037166.single.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.meta+mask.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.meta+mask.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.meta.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.meta.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.single.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/MIIJ01000039.single.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.meta.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.meta.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.meta.gff -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.meta.tsv -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.single.faa.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.single.fna.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/data/SRR492066.training.bin.gz -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/tests/requirements.txt -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_connection.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_connection.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.pyi -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.pyx -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_sequence.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_sequence.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_unicode.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/py.typed -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/cpu_features copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features/__init__.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/cpu_features copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features/aarch64.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/cpu_features copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features/arm.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/cpu_features copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/cpu_features/x86.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/cpu_features creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/__init__.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/avx.c -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/avx.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/avx.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/generic.c -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/generic.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/generic.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/mmx.c -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/mmx.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/mmx.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/neon.c -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/neon.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/neon.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/sse.c -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/sse.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/sse.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/impl/template.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/impl creating /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/__init__.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/bitmap.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/dprog.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/gene.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/metagenomic.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/node.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/sequence.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/prodigal/training.pxd -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/prodigal copying build/lib.dragonfly-6.5-x86_64-cpython-39/pyrodigal/_pyrodigal.h -> /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/__main__.py to __main__.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/_version.py to _version.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/cli.py to cli.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/fasta.py to fasta.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_connection_scorer.py to test_connection_scorer.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_doctest.py to test_doctest.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_gene.py to test_gene.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_genes.py to test_genes.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_mask.py to test_mask.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_nodes.py to test_nodes.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_orf_finder.py to test_orf_finder.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_sequence.py to test_sequence.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/test_training_info.py to test_training_info.cpython-39.pyc byte-compiling /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal/tests/data/__init__.py to __init__.cpython-39.pyc writing byte-compilation script '/tmp/tmpdb0nz5su.py' /usr/local/bin/python3.9 /tmp/tmpdb0nz5su.py removing /tmp/tmpdb0nz5su.py running install_egg_info Copying pyrodigal.egg-info to /construction/biology/py-pyrodigal/stage/usr/local/lib/python3.9/site-packages/pyrodigal-2.2.0-py3.9.egg-info running install_scripts Installing pyrodigal script to /construction/biology/py-pyrodigal/stage/usr/local/bin writing list of installed files to '/construction/biology/py-pyrodigal/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/pyrodigal --> bin/pyrodigal-3.9 Link: @bin/pyrodigal --> bin/pyrodigal-3.9 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-pyrodigal-2.2.0 file sizes/checksums [122]: 0% file sizes/checksums [122]: 81% file sizes/checksums [122]: 100% Service unavailablepacking files [122]: 0% packing files [122]: 81% packing files [122]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:17