------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/biology/py-goatools XDG_CONFIG_HOME=/construction/biology/py-goatools XDG_CACHE_HOME=/construction/biology/py-goatools/.cache HOME=/construction/biology/py-goatools TMPDIR="/tmp" PATH=/construction/biology/py-goatools/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-goatools/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-goatools XDG_CONFIG_HOME=/construction/biology/py-goatools XDG_CACHE_HOME=/construction/biology/py-goatools/.cache HOME=/construction/biology/py-goatools TMPDIR="/tmp" PATH=/construction/biology/py-goatools/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-goatools/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/py-goatools/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/goatools" EXAMPLESDIR="share/examples/goatools" DATADIR="share/goatools" WWWDIR="www/goatools" ETCDIR="etc/goatools" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/goatools DOCSDIR=/usr/local/share/doc/goatools EXAMPLESDIR=/usr/local/share/examples/goatools WWWDIR=/usr/local/www/goatools ETCDIR=/usr/local/etc/goatools SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/py39-cython-0.29.35.pkg Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/py39-six-1.16.0.pkg Installing /packages/All/py39-dateutil-2.8.2.pkg Installing /packages/All/py39-pytz-2023.3,1.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/libedit-3.1.20221030,1.pkg Installing /packages/All/sqlite3-3.42.0,1.pkg Installing /packages/All/py39-sqlite3-3.9.17_7.pkg Installing /packages/All/py39-tzdata-2023.3_1.pkg Installing /packages/All/py39-bottleneck-1.3.7_1.pkg Installing /packages/All/py39-numexpr-2.8.4_1.pkg Installing /packages/All/py39-pandas-2.0.2,1.pkg ===== Message from py39-pandas-2.0.2,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. Installing /packages/All/blas-3.11.0_1.pkg Installing /packages/All/py39-scipy-1.10.1_1.pkg Installing /packages/All/py39-XlsxWriter-1.4.3.pkg Installing /packages/All/py39-packaging-23.1.pkg Installing /packages/All/py39-patsy-0.5.3_1.pkg Installing /packages/All/py39-statsmodels-0.14.0.pkg Installing /packages/All/py39-xlrd-2.0.1.pkg Installing /packages/All/py39-docopt-0.6.2_1.pkg Installing /packages/All/libltdl-2.4.7.pkg Installing /packages/All/png-1.6.39.pkg Installing /packages/All/giflib-5.2.1.pkg Installing /packages/All/libdeflate-1.18.pkg Installing /packages/All/jbigkit-2.1_1.pkg Installing /packages/All/jpeg-turbo-2.1.5.1.pkg Installing /packages/All/tiff-4.4.0_1.pkg Installing /packages/All/webp-1.3.0_1.pkg Installing /packages/All/brotli-1.0.9,1.pkg Installing /packages/All/freetype2-2.12.1_2.pkg ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.14.2,1.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/graphite2-1.3.14.pkg Installing /packages/All/pcre2-10.42.pkg Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/libiconv-1.17.pkg Installing /packages/All/glib-2.76.4,2.pkg Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/harfbuzz-7.3.0.pkg Installing /packages/All/libgd-2.3.3_5,1.pkg Installing /packages/All/libXau-1.0.9.pkg Installing /packages/All/xorgproto-2022.1_1.pkg Installing /packages/All/libXdmcp-1.1.3.pkg Installing /packages/All/libxcb-1.15_1.pkg Installing /packages/All/libX11-1.8.6,1.pkg Installing /packages/All/libXext-1.3.4,1.pkg Installing /packages/All/libglvnd-1.6.0.pkg Installing /packages/All/pixman-0.42.2.pkg Installing /packages/All/libXrender-0.9.10_2.pkg Installing /packages/All/cairo-1.17.4_2,3.pkg Installing /packages/All/fribidi-1.0.13.pkg Installing /packages/All/libdatrie-0.2.13_1.pkg Installing /packages/All/libthai-0.1.29.pkg ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libfontenc-1.1.4.pkg Installing /packages/All/mkfontscale-1.2.1.pkg Installing /packages/All/font-bh-ttf-1.0.3_4.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/font-misc-meltho-1.0.3_4.pkg Installing /packages/All/font-misc-ethiopic-1.0.4.pkg Installing /packages/All/encodings-1.0.5,1.pkg Installing /packages/All/dejavu-2.37_1.pkg Running fc-cache to build fontconfig cache... ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.pkg Installing /packages/All/libXft-2.3.7.pkg Installing /packages/All/pango-1.50.14.pkg Installing /packages/All/libICE-1.1.0_1,1.pkg Installing /packages/All/libSM-1.2.3,1.pkg Installing /packages/All/libXt-1.2.1,1.pkg Installing /packages/All/libXmu-1.1.3,1.pkg Installing /packages/All/libXpm-3.5.15.pkg Installing /packages/All/libXaw-1.0.14,2.pkg Installing /packages/All/graphviz-7.1.0_6.pkg Installing /packages/All/py39-pyparsing-3.0.9_2.pkg Installing /packages/All/py39-pydot-1.4.2.pkg Installing /packages/All/py39-certifi-2023.5.7.pkg Installing /packages/All/py39-charset-normalizer-3.1.0.pkg Installing /packages/All/py39-idna-3.4_1.pkg Installing /packages/All/py39-pysocks-1.7.1.pkg Installing /packages/All/py39-pycparser-2.21.pkg Installing /packages/All/py39-cffi-1.15.1.pkg Installing /packages/All/py39-cryptography-3.4.8_1,1.pkg Installing /packages/All/py39-openssl-21.0.0,1.pkg Installing /packages/All/py39-urllib3-1.26.16,1.pkg ===== Message from py39-urllib3-1.26.16,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. Installing /packages/All/py39-requests-2.31.0.pkg Installing /packages/All/py39-pygraphviz-1.6.pkg Installing /packages/All/libunistring-1.1.pkg Installing /packages/All/libidn2-2.3.4.pkg Installing /packages/All/wget-1.21.4.pkg UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-goatools-1.1.6_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-goatools-1.1.6_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-goatools-1.1.6_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-goatools-1.1.6_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-goatools-1.1.6_1 for building => SHA256 Checksum OK for goatools-1.1.6.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-goatools-1.1.6_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-goatools-1.1.6_1 for building ===> Extracting for py39-goatools-1.1.6_1 => SHA256 Checksum OK for goatools-1.1.6.tar.gz. Extracted Memory Use: 106.88M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-goatools-1.1.6_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-goatools-1.1.6_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-goatools-1.1.6_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-goatools-1.1.6_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-goatools-1.1.6_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-goatools-1.1.6_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-goatools-1.1.6_1 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-goatools-1.1.6_1 /usr/local/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v1.1.6' to '1.1.6' warnings.warn(tmpl.format(**locals())) running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-goatools-1.1.6_1 /usr/local/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v1.1.6' to '1.1.6' warnings.warn(tmpl.format(**locals())) running build running build_py creating build creating build/lib creating build/lib/goatools copying goatools/__init__.py -> build/lib/goatools copying goatools/_version.py -> build/lib/goatools copying goatools/associations.py -> build/lib/goatools copying goatools/base.py -> build/lib/goatools copying goatools/evidence_codes.py -> build/lib/goatools copying goatools/go_enrichment.py -> build/lib/goatools copying goatools/go_search.py -> build/lib/goatools copying goatools/godag_obosm.py -> build/lib/goatools copying goatools/godag_plot.py -> build/lib/goatools copying goatools/godag_small.py -> build/lib/goatools copying goatools/mapslim.py -> build/lib/goatools copying goatools/multiple_testing.py -> build/lib/goatools copying goatools/nt_utils.py -> build/lib/goatools copying goatools/obo_parser.py -> build/lib/goatools copying goatools/obo_tasks.py -> build/lib/goatools copying goatools/pvalcalc.py -> build/lib/goatools copying goatools/randseed.py -> build/lib/goatools copying goatools/ratio.py -> build/lib/goatools copying goatools/semantic.py -> build/lib/goatools copying goatools/statsdescribe.py -> build/lib/goatools copying goatools/utils.py -> build/lib/goatools copying goatools/wr_tbl.py -> build/lib/goatools copying goatools/wr_tbl_class.py -> build/lib/goatools creating build/lib/goatools/godag copying goatools/godag/__init__.py -> build/lib/goatools/godag copying goatools/godag/consts.py -> build/lib/goatools/godag copying goatools/godag/go_tasks.py -> build/lib/goatools/godag copying goatools/godag/obo_optional_attributes.py -> build/lib/goatools/godag copying goatools/godag/prtfncs.py -> build/lib/goatools/godag copying goatools/godag/prttime.py -> build/lib/goatools/godag copying goatools/godag/relationship_combos.py -> build/lib/goatools/godag copying goatools/godag/relationship_str.py -> build/lib/goatools/godag copying goatools/godag/reldepth.py -> build/lib/goatools/godag copying goatools/godag/typedef.py -> build/lib/goatools/godag creating build/lib/goatools/gosubdag copying goatools/gosubdag/__init__.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_edges.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_most_specific.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_paths.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/go_tasks.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/godag_rcnt.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/godag_rcnt_init.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/gosubdag.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/gosubdag_init.py -> build/lib/goatools/gosubdag copying goatools/gosubdag/utils.py -> build/lib/goatools/gosubdag creating build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/__init__.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go2color.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go_edge.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go_name_shorten.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/go_node.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/goea_results.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/gosubdag_plot.py -> build/lib/goatools/gosubdag/plot copying goatools/gosubdag/plot/plot.py -> build/lib/goatools/gosubdag/plot creating build/lib/goatools/gosubdag/rpt copying goatools/gosubdag/rpt/__init__.py -> build/lib/goatools/gosubdag/rpt copying goatools/gosubdag/rpt/wr_xlsx.py -> build/lib/goatools/gosubdag/rpt copying goatools/gosubdag/rpt/write_hierarchy.py -> build/lib/goatools/gosubdag/rpt creating build/lib/goatools/test_data copying goatools/test_data/__init__.py -> build/lib/goatools/test_data copying goatools/test_data/checks.py -> build/lib/goatools/test_data copying goatools/test_data/gafs.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_10090_All.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_9606_All.py -> build/lib/goatools/test_data copying goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_consistent_increase.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_late_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_late_increase.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_transient_decrease.py -> build/lib/goatools/test_data copying goatools/test_data/gjoneska_goea_transient_increase.py -> build/lib/goatools/test_data copying goatools/test_data/godag_timed.py -> build/lib/goatools/test_data copying goatools/test_data/nature3102_goea.py -> build/lib/goatools/test_data copying goatools/test_data/sorter.py -> build/lib/goatools/test_data copying goatools/test_data/wr_subobo.py -> build/lib/goatools/test_data creating build/lib/goatools/test_data/sections copying goatools/test_data/sections/__init__.py -> build/lib/goatools/test_data/sections copying goatools/test_data/sections/data2018_07_find_enrichment.py -> build/lib/goatools/test_data/sections copying goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/lib/goatools/test_data/sections copying goatools/test_data/sections/gjoneska_pfenning.py -> build/lib/goatools/test_data/sections creating build/lib/goatools/test_data/cli copying goatools/test_data/cli/__init__.py -> build/lib/goatools/test_data/cli copying goatools/test_data/cli/find_enrichment_dflts.py -> build/lib/goatools/test_data/cli creating build/lib/goatools/cli copying goatools/cli/__init__.py -> build/lib/goatools/cli copying goatools/cli/compare_gos.py -> build/lib/goatools/cli copying goatools/cli/docopt_parse.py -> build/lib/goatools/cli copying goatools/cli/find_enrichment.py -> build/lib/goatools/cli copying goatools/cli/gos_get.py -> build/lib/goatools/cli copying goatools/cli/gosubdag_plot.py -> build/lib/goatools/cli copying goatools/cli/grouped.py -> build/lib/goatools/cli copying goatools/cli/ncbi_gene_results_to_python.py -> build/lib/goatools/cli copying goatools/cli/prt_terms.py -> build/lib/goatools/cli copying goatools/cli/wr_hierarchy.py -> build/lib/goatools/cli copying goatools/cli/wr_sections.py -> build/lib/goatools/cli creating build/lib/goatools/rpt copying goatools/rpt/__init__.py -> build/lib/goatools/rpt copying goatools/rpt/goea_nt_xfrm.py -> build/lib/goatools/rpt copying goatools/rpt/nts_xfrm.py -> build/lib/goatools/rpt copying goatools/rpt/prtfmt.py -> build/lib/goatools/rpt copying goatools/rpt/rpt_lev_depth.py -> build/lib/goatools/rpt copying goatools/rpt/write_hierarchy_base.py -> build/lib/goatools/rpt creating build/lib/goatools/anno copying goatools/anno/__init__.py -> build/lib/goatools/anno copying goatools/anno/annoreader_base.py -> build/lib/goatools/anno copying goatools/anno/broad_gos.py -> build/lib/goatools/anno copying goatools/anno/dnld_ebi_goa.py -> build/lib/goatools/anno copying goatools/anno/eco2group.py -> build/lib/goatools/anno copying goatools/anno/factory.py -> build/lib/goatools/anno copying goatools/anno/gaf_reader.py -> build/lib/goatools/anno copying goatools/anno/genetogo_reader.py -> build/lib/goatools/anno copying goatools/anno/gpad_reader.py -> build/lib/goatools/anno copying goatools/anno/idtogos_reader.py -> build/lib/goatools/anno copying goatools/anno/opts.py -> build/lib/goatools/anno copying goatools/anno/update_association.py -> build/lib/goatools/anno creating build/lib/goatools/anno/init copying goatools/anno/init/__init__.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_gaf.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_genetogo.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_gpad.py -> build/lib/goatools/anno/init copying goatools/anno/init/reader_idtogos.py -> build/lib/goatools/anno/init copying goatools/anno/init/utils.py -> build/lib/goatools/anno/init creating build/lib/goatools/anno/extensions copying goatools/anno/extensions/__init__.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/extension.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/extensions.py -> build/lib/goatools/anno/extensions copying goatools/anno/extensions/factory.py -> build/lib/goatools/anno/extensions creating build/lib/goatools/goea copying goatools/goea/__init__.py -> build/lib/goatools/goea copying goatools/goea/go_enrichment_ns.py -> build/lib/goatools/goea creating build/lib/goatools/grouper copying goatools/grouper/__init__.py -> build/lib/goatools/grouper copying goatools/grouper/aart_geneproducts_all.py -> build/lib/goatools/grouper copying goatools/grouper/aart_geneproducts_one.py -> build/lib/goatools/grouper copying goatools/grouper/colors.py -> build/lib/goatools/grouper copying goatools/grouper/grprdflts.py -> build/lib/goatools/grouper copying goatools/grouper/grprobj.py -> build/lib/goatools/grouper copying goatools/grouper/grprobj_init.py -> build/lib/goatools/grouper copying goatools/grouper/grprplt.py -> build/lib/goatools/grouper copying goatools/grouper/hdrgos.py -> build/lib/goatools/grouper copying goatools/grouper/plotobj.py -> build/lib/goatools/grouper copying goatools/grouper/read_goids.py -> build/lib/goatools/grouper copying goatools/grouper/sorter.py -> build/lib/goatools/grouper copying goatools/grouper/sorter_gos.py -> build/lib/goatools/grouper copying goatools/grouper/sorter_nts.py -> build/lib/goatools/grouper copying goatools/grouper/tasks.py -> build/lib/goatools/grouper copying goatools/grouper/utils.py -> build/lib/goatools/grouper copying goatools/grouper/wr_sections.py -> build/lib/goatools/grouper copying goatools/grouper/wrxlsx.py -> build/lib/goatools/grouper creating build/lib/goatools/parsers copying goatools/parsers/__init__.py -> build/lib/goatools/parsers copying goatools/parsers/david_chart.py -> build/lib/goatools/parsers copying goatools/parsers/ncbi_gene_file_reader.py -> build/lib/goatools/parsers creating build/lib/goatools/semsim copying goatools/semsim/__init__.py -> build/lib/goatools/semsim creating build/lib/goatools/semsim/termwise copying goatools/semsim/termwise/__init__.py -> build/lib/goatools/semsim/termwise copying goatools/semsim/termwise/dag_a.py -> build/lib/goatools/semsim/termwise copying goatools/semsim/termwise/wang.py -> build/lib/goatools/semsim/termwise running egg_info writing goatools.egg-info/PKG-INFO writing dependency_links to goatools.egg-info/dependency_links.txt writing requirements to goatools.egg-info/requires.txt writing top-level names to goatools.egg-info/top_level.txt reading manifest file 'goatools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'goatools.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'goatools.test_data.nbt_3102' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'goatools.test_data.nbt_3102' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'goatools.test_data.nbt_3102' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'goatools.test_data.nbt_3102' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/README.md -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/__init__.py -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/lib/goatools/test_data/nbt_3102 copying goatools/test_data/nbt_3102/symbol2geneid.py -> build/lib/goatools/test_data/nbt_3102 UPDATING build/lib/goatools/_version.py set build/lib/goatools/_version.py to 'v1.1.6' running build_scripts creating build/scripts-3.9 copying and adjusting scripts/compare_gos.py -> build/scripts-3.9 copying scripts/fetch_associations.py -> build/scripts-3.9 copying and adjusting scripts/find_enrichment.py -> build/scripts-3.9 copying and adjusting scripts/go_plot.py -> build/scripts-3.9 copying and adjusting scripts/map_to_slim.py -> build/scripts-3.9 copying and adjusting scripts/ncbi_gene_results_to_python.py -> build/scripts-3.9 copying and adjusting scripts/plot_go_term.py -> build/scripts-3.9 copying and adjusting scripts/prt_terms.py -> build/scripts-3.9 copying and adjusting scripts/wr_hier.py -> build/scripts-3.9 copying and adjusting scripts/wr_sections.py -> build/scripts-3.9 changing mode of build/scripts-3.9/compare_gos.py from 644 to 755 changing mode of build/scripts-3.9/find_enrichment.py from 644 to 755 changing mode of build/scripts-3.9/go_plot.py from 644 to 755 changing mode of build/scripts-3.9/map_to_slim.py from 644 to 755 changing mode of build/scripts-3.9/ncbi_gene_results_to_python.py from 644 to 755 changing mode of build/scripts-3.9/plot_go_term.py from 644 to 755 changing mode of build/scripts-3.9/prt_terms.py from 644 to 755 changing mode of build/scripts-3.9/wr_hier.py from 644 to 755 changing mode of build/scripts-3.9/wr_sections.py from 644 to 755 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-goatools-1.1.6_1 depends on package: py39-pandas>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-goatools-1.1.6_1 depends on package: py39-scipy>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-XlsxWriter>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-statsmodels>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-xlrd>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-docopt>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-pydot>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-requests>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-pygraphviz>0 - found ===> py39-goatools-1.1.6_1 depends on package: wget>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-goatools-1.1.6_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-goatools-1.1.6_1 ===> py39-goatools-1.1.6_1 depends on package: py39-pandas>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-goatools-1.1.6_1 depends on package: py39-scipy>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-XlsxWriter>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-statsmodels>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-xlrd>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-docopt>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-pydot>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-requests>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-pygraphviz>0 - found ===> py39-goatools-1.1.6_1 depends on package: wget>0 - found ===> py39-goatools-1.1.6_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-goatools-1.1.6_1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list /usr/local/lib/python3.9/site-packages/setuptools/dist.py:530: UserWarning: Normalizing 'v1.1.6' to '1.1.6' warnings.warn(tmpl.format(**locals())) running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing goatools.egg-info/PKG-INFO writing dependency_links to goatools.egg-info/dependency_links.txt writing requirements to goatools.egg-info/requires.txt writing top-level names to goatools.egg-info/top_level.txt reading manifest file 'goatools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'goatools.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'goatools.test_data.nbt_3102' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'goatools.test_data.nbt_3102' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'goatools.test_data.nbt_3102' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'goatools.test_data.nbt_3102' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) UPDATING build/lib/goatools/_version.py set build/lib/goatools/_version.py to 'v1.1.6' running build_scripts running install_lib creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9 creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/_version.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/associations.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/base.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/evidence_codes.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/go_enrichment.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/go_search.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/godag_obosm.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/godag_plot.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/godag_small.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/mapslim.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/multiple_testing.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/nt_utils.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/obo_parser.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/obo_tasks.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/pvalcalc.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/randseed.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/ratio.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/semantic.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/statsdescribe.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/utils.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/wr_tbl.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools copying build/lib/goatools/wr_tbl_class.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/consts.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/go_tasks.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/obo_optional_attributes.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/prtfncs.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/prttime.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/relationship_combos.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/relationship_str.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/reldepth.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag copying build/lib/goatools/godag/typedef.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_edges.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_most_specific.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_paths.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/go_tasks.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/godag_rcnt.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/godag_rcnt_init.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/gosubdag.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/gosubdag_init.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag copying build/lib/goatools/gosubdag/utils.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go2color.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go_edge.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go_name_shorten.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/go_node.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/goea_results.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/gosubdag_plot.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot copying build/lib/goatools/gosubdag/plot/plot.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/rpt copying build/lib/goatools/gosubdag/rpt/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/rpt copying build/lib/goatools/gosubdag/rpt/wr_xlsx.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/rpt copying build/lib/goatools/gosubdag/rpt/write_hierarchy.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/rpt creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/checks.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gafs.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_10090_All.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_9606_All.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_consistent_decrease.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_consistent_increase.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_late_decrease.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_late_increase.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_transient_decrease.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/gjoneska_goea_transient_increase.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/godag_timed.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/nature3102_goea.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/sorter.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data copying build/lib/goatools/test_data/wr_subobo.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/data2018_07_find_enrichment.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/dvk2018_genefamilyclusters.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections copying build/lib/goatools/test_data/sections/gjoneska_pfenning.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/cli copying build/lib/goatools/test_data/cli/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/cli copying build/lib/goatools/test_data/cli/find_enrichment_dflts.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/cli creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/README.md -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 copying build/lib/goatools/test_data/nbt_3102/symbol2geneid.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102 creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/compare_gos.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/docopt_parse.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/find_enrichment.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/gos_get.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/gosubdag_plot.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/grouped.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/ncbi_gene_results_to_python.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/prt_terms.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/wr_hierarchy.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli copying build/lib/goatools/cli/wr_sections.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt copying build/lib/goatools/rpt/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt copying build/lib/goatools/rpt/goea_nt_xfrm.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt copying build/lib/goatools/rpt/nts_xfrm.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt copying build/lib/goatools/rpt/prtfmt.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt copying build/lib/goatools/rpt/rpt_lev_depth.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt copying build/lib/goatools/rpt/write_hierarchy_base.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/annoreader_base.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/broad_gos.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/dnld_ebi_goa.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/eco2group.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/factory.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/gaf_reader.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/genetogo_reader.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/gpad_reader.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/idtogos_reader.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/opts.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno copying build/lib/goatools/anno/update_association.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_gaf.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_genetogo.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_gpad.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/reader_idtogos.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init copying build/lib/goatools/anno/init/utils.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/extension.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/extensions.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions copying build/lib/goatools/anno/extensions/factory.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/goea copying build/lib/goatools/goea/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/goea copying build/lib/goatools/goea/go_enrichment_ns.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/goea creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/aart_geneproducts_all.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/aart_geneproducts_one.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/colors.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprdflts.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprobj.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprobj_init.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/grprplt.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/hdrgos.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/plotobj.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/read_goids.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/sorter.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/sorter_gos.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/sorter_nts.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/tasks.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/utils.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/wr_sections.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper copying build/lib/goatools/grouper/wrxlsx.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/parsers copying build/lib/goatools/parsers/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/parsers copying build/lib/goatools/parsers/david_chart.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/parsers copying build/lib/goatools/parsers/ncbi_gene_file_reader.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/parsers creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim copying build/lib/goatools/semsim/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim creating /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/termwise copying build/lib/goatools/semsim/termwise/__init__.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/termwise copying build/lib/goatools/semsim/termwise/dag_a.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/termwise copying build/lib/goatools/semsim/termwise/wang.py -> /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/termwise byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/_version.py to _version.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/associations.py to associations.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/base.py to base.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/evidence_codes.py to evidence_codes.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/go_enrichment.py to go_enrichment.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/go_search.py to go_search.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag_obosm.py to godag_obosm.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag_plot.py to godag_plot.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag_small.py to godag_small.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/mapslim.py to mapslim.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/multiple_testing.py to multiple_testing.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/nt_utils.py to nt_utils.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/obo_parser.py to obo_parser.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/obo_tasks.py to obo_tasks.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/pvalcalc.py to pvalcalc.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/randseed.py to randseed.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/ratio.py to ratio.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semantic.py to semantic.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/statsdescribe.py to statsdescribe.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/wr_tbl.py to wr_tbl.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/wr_tbl_class.py to wr_tbl_class.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/consts.py to consts.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/go_tasks.py to go_tasks.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/obo_optional_attributes.py to obo_optional_attributes.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/prtfncs.py to prtfncs.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/prttime.py to prttime.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/relationship_combos.py to relationship_combos.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/relationship_str.py to relationship_str.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/reldepth.py to reldepth.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/godag/typedef.py to typedef.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/go_edges.py to go_edges.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/go_most_specific.py to go_most_specific.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/go_paths.py to go_paths.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/go_tasks.py to go_tasks.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/godag_rcnt.py to godag_rcnt.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/godag_rcnt_init.py to godag_rcnt_init.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/gosubdag.py to gosubdag.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/gosubdag_init.py to gosubdag_init.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/go2color.py to go2color.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/go_edge.py to go_edge.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/go_name_shorten.py to go_name_shorten.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/go_node.py to go_node.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/goea_results.py to goea_results.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/gosubdag_plot.py to gosubdag_plot.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/plot/plot.py to plot.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/rpt/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/rpt/wr_xlsx.py to wr_xlsx.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/gosubdag/rpt/write_hierarchy.py to write_hierarchy.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/checks.py to checks.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gafs.py to gafs.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/genes_NCBI_10090_All.py to genes_NCBI_10090_All.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/genes_NCBI_10090_ProteinCoding.py to genes_NCBI_10090_ProteinCoding.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/genes_NCBI_7227_ProteinCoding.py to genes_NCBI_7227_ProteinCoding.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/genes_NCBI_9606_All.py to genes_NCBI_9606_All.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/genes_NCBI_9606_ProteinCoding.py to genes_NCBI_9606_ProteinCoding.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gjoneska_2015_ensmusg2symbol.py to gjoneska_2015_ensmusg2symbol.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gjoneska_goea_consistent_decrease.py to gjoneska_goea_consistent_decrease.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gjoneska_goea_consistent_increase.py to gjoneska_goea_consistent_increase.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gjoneska_goea_late_decrease.py to gjoneska_goea_late_decrease.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gjoneska_goea_late_increase.py to gjoneska_goea_late_increase.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gjoneska_goea_transient_decrease.py to gjoneska_goea_transient_decrease.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/gjoneska_goea_transient_increase.py to gjoneska_goea_transient_increase.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/godag_timed.py to godag_timed.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nature3102_goea.py to nature3102_goea.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sorter.py to sorter.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/wr_subobo.py to wr_subobo.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections/data2018_07_find_enrichment.py to data2018_07_find_enrichment.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections/dvk2018_genefamilyclusters.py to dvk2018_genefamilyclusters.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/sections/gjoneska_pfenning.py to gjoneska_pfenning.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/cli/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/cli/find_enrichment_dflts.py to find_enrichment_dflts.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/test_data/nbt_3102/symbol2geneid.py to symbol2geneid.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/compare_gos.py to compare_gos.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/docopt_parse.py to docopt_parse.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/find_enrichment.py to find_enrichment.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/gos_get.py to gos_get.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/gosubdag_plot.py to gosubdag_plot.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/grouped.py to grouped.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/ncbi_gene_results_to_python.py to ncbi_gene_results_to_python.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/prt_terms.py to prt_terms.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/wr_hierarchy.py to wr_hierarchy.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/cli/wr_sections.py to wr_sections.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt/goea_nt_xfrm.py to goea_nt_xfrm.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt/nts_xfrm.py to nts_xfrm.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt/prtfmt.py to prtfmt.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt/rpt_lev_depth.py to rpt_lev_depth.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/rpt/write_hierarchy_base.py to write_hierarchy_base.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/annoreader_base.py to annoreader_base.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/broad_gos.py to broad_gos.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/dnld_ebi_goa.py to dnld_ebi_goa.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/eco2group.py to eco2group.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/factory.py to factory.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/gaf_reader.py to gaf_reader.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/genetogo_reader.py to genetogo_reader.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/gpad_reader.py to gpad_reader.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/idtogos_reader.py to idtogos_reader.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/opts.py to opts.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/update_association.py to update_association.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init/reader_gaf.py to reader_gaf.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init/reader_genetogo.py to reader_genetogo.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init/reader_gpad.py to reader_gpad.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init/reader_idtogos.py to reader_idtogos.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/init/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions/extension.py to extension.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions/extensions.py to extensions.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/anno/extensions/factory.py to factory.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/goea/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/goea/go_enrichment_ns.py to go_enrichment_ns.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/aart_geneproducts_all.py to aart_geneproducts_all.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/aart_geneproducts_one.py to aart_geneproducts_one.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/colors.py to colors.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/grprdflts.py to grprdflts.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/grprobj.py to grprobj.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/grprobj_init.py to grprobj_init.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/grprplt.py to grprplt.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/hdrgos.py to hdrgos.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/plotobj.py to plotobj.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/read_goids.py to read_goids.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/sorter.py to sorter.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/sorter_gos.py to sorter_gos.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/sorter_nts.py to sorter_nts.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/tasks.py to tasks.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/wr_sections.py to wr_sections.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/grouper/wrxlsx.py to wrxlsx.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/parsers/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/parsers/david_chart.py to david_chart.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/parsers/ncbi_gene_file_reader.py to ncbi_gene_file_reader.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/termwise/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/termwise/dag_a.py to dag_a.cpython-39.pyc byte-compiling /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools/semsim/termwise/wang.py to wang.cpython-39.pyc writing byte-compilation script '/tmp/tmp1jhgy5d3.py' /usr/local/bin/python3.9 /tmp/tmp1jhgy5d3.py removing /tmp/tmp1jhgy5d3.py running install_egg_info Copying goatools.egg-info to /construction/biology/py-goatools/stage/usr/local/lib/python3.9/site-packages/goatools-1.1.6-py3.9.egg-info running install_scripts copying build/scripts-3.9/compare_gos.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/fetch_associations.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/find_enrichment.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/go_plot.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/map_to_slim.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/ncbi_gene_results_to_python.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/plot_go_term.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/prt_terms.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/wr_hier.py -> /construction/biology/py-goatools/stage/usr/local/bin copying build/scripts-3.9/wr_sections.py -> /construction/biology/py-goatools/stage/usr/local/bin changing mode of /construction/biology/py-goatools/stage/usr/local/bin/compare_gos.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/fetch_associations.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/find_enrichment.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/go_plot.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/map_to_slim.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/ncbi_gene_results_to_python.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/plot_go_term.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/prt_terms.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/wr_hier.py to 755 changing mode of /construction/biology/py-goatools/stage/usr/local/bin/wr_sections.py to 755 writing list of installed files to '/construction/biology/py-goatools/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:58 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-goatools-1.1.6_1 file sizes/checksums [461]: 0% file sizes/checksums [461]: 21% file sizes/checksums [461]: 43% file sizes/checksums [461]: 65% file sizes/checksums [461]: 86% file sizes/checksums [461]: 100% Service unavailablepacking files [461]: 0% packing files [461]: 21% packing files [461]: 43% packing files [461]: 65% packing files [461]: 86% packing files [461]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:16 TOTAL TIME 00:01:35