------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/biology/py-ete3 XDG_CONFIG_HOME=/construction/biology/py-ete3 XDG_CACHE_HOME=/construction/biology/py-ete3/.cache HOME=/construction/biology/py-ete3 TMPDIR="/tmp" PATH=/construction/biology/py-ete3/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-ete3/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-ete3 XDG_CONFIG_HOME=/construction/biology/py-ete3 XDG_CACHE_HOME=/construction/biology/py-ete3/.cache HOME=/construction/biology/py-ete3 TMPDIR="/tmp" PATH=/construction/biology/py-ete3/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-ete3/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/py-ete3/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PYQT_APIDIR=share/PyQt5/3.9/qsci PYQT_DOCDIR=share/doc/PyQt5/3.9 PYQT_EXAMPLEDIR=share/examples/PyQt5/3.9 PYQT_SIPDIR=/usr/local/lib/python3.9/site-packages/PyQt5/bindings PYQT_DESIGNERDIR=/designer/PyQt5/3.9 PYQT_QMLDIR=/PyQt5/3.9 PYQT_SIPVERSION=6.7.7 PYQT_QSCIVERSION=2.13.3 PYQT_PYQTVERSION=5.15.9 OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-ete3" EXAMPLESDIR="share/examples/py39-ete3" DATADIR="share/py39-ete3" WWWDIR="www/py39-ete3" ETCDIR="etc/py39-ete3" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-ete3 DOCSDIR=/usr/local/share/doc/py39-ete3 EXAMPLESDIR=/usr/local/share/examples/py39-ete3 WWWDIR=/usr/local/www/py39-ete3 ETCDIR=/usr/local/etc/py39-ete3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/libxml2-2.10.4.pkg Installing /packages/All/libgpg-error-1.47.pkg Installing /packages/All/libgcrypt-1.10.2.pkg Installing /packages/All/libxslt-1.1.37.pkg Installing /packages/All/py39-lxml-4.9.2.pkg Installing /packages/All/py39-six-1.16.0.pkg Installing /packages/All/libXau-1.0.9.pkg Installing /packages/All/xorgproto-2022.1_1.pkg Installing /packages/All/libXdmcp-1.1.3.pkg Installing /packages/All/libxcb-1.15_1.pkg Installing /packages/All/libX11-1.8.6,1.pkg Installing /packages/All/libXext-1.3.4,1.pkg Installing /packages/All/libglvnd-1.6.0.pkg Installing /packages/All/double-conversion-3.3.0.pkg Installing /packages/All/icu-73.2,1.pkg Installing /packages/All/pcre2-10.42.pkg Installing /packages/All/libiconv-1.17.pkg Installing /packages/All/glib-2.76.4,2.pkg Generating GIO modules cache Compiling glib schemas No schema files found: doing nothing. Installing /packages/All/qt5-core-5.15.8p157_1.pkg Installing /packages/All/libICE-1.1.0_1,1.pkg Installing /packages/All/libSM-1.2.3,1.pkg Installing /packages/All/dbus-1.14.6,1.pkg ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/libevdev-1.5.9.pkg Installing /packages/All/brotli-1.0.9,1.pkg Installing /packages/All/png-1.6.39.pkg Installing /packages/All/freetype2-2.12.1_2.pkg ===== Message from freetype2-2.12.1_2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.14.2,1.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/graphite2-1.3.14.pkg Installing /packages/All/harfbuzz-7.3.0.pkg Installing /packages/All/libepoll-shim-0.0.20230411.pkg Installing /packages/All/libudev-devd-0.5.1.pkg Installing /packages/All/libmtdev-1.1.6_1.pkg Installing /packages/All/libgudev-234.pkg Installing /packages/All/libwacom-1.5.pkg Installing /packages/All/py39-evdev-1.6.0.pkg Installing /packages/All/py39-pyudev-0.22.0.pkg Installing /packages/All/libinput-1.23.0.pkg Installing /packages/All/xcb-util-0.4.1,1.pkg Installing /packages/All/xcb-util-wm-0.4.2.pkg Installing /packages/All/xcb-util-image-0.4.1.pkg Installing /packages/All/xcb-util-keysyms-0.4.1.pkg Installing /packages/All/xcb-util-renderutil-0.3.10.pkg Installing /packages/All/wayland-1.22.0.pkg ===== Message from wayland-1.22.0: -- Wayland requires XDG_RUNTIME_DIR to be defined to a path that will contain "wayland-%d" unix(4) sockets. This is usually handled by consolekit2 (via ck-launch-session) or pam_xdg (via login). Installing /packages/All/xkeyboard-config-2.34_2.pkg Installing /packages/All/libxkbcommon-1.5.0.pkg ===== Message from libxkbcommon-1.5.0: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg Installing /packages/All/jpeg-turbo-2.1.5.1.pkg Installing /packages/All/qt5-dbus-5.15.8p157.pkg Installing /packages/All/ca_root_nss-3.89.1.pkg ===== Message from ca_root_nss-3.89.1: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/qt5-network-5.15.8p157.pkg Installing /packages/All/vulkan-headers-1.3.257.pkg Installing /packages/All/hicolor-icon-theme-0.17.pkg Installing /packages/All/xprop-1.2.6.pkg Installing /packages/All/libXt-1.2.1,1.pkg Installing /packages/All/libXmu-1.1.3,1.pkg Installing /packages/All/xset-1.2.5.pkg Installing /packages/All/xdg-utils-1.1.3_2.pkg Installing /packages/All/encodings-1.0.5,1.pkg Installing /packages/All/libfontenc-1.1.4.pkg Installing /packages/All/mkfontscale-1.2.1.pkg Installing /packages/All/font-bh-ttf-1.0.3_4.pkg Running fc-cache to build fontconfig cache... Installing /packages/All/font-misc-meltho-1.0.3_4.pkg Installing /packages/All/font-misc-ethiopic-1.0.4.pkg Installing /packages/All/dejavu-2.37_1.pkg Running fc-cache to build fontconfig cache... ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.pkg Installing /packages/All/libXfixes-6.0.0.pkg Installing /packages/All/libXi-1.8,1.pkg Installing /packages/All/libXrender-0.9.10_2.pkg Installing /packages/All/qt5-gui-5.15.8p157_1.pkg Installing /packages/All/libdaemon-0.14_1.pkg Installing /packages/All/dbus-glib-0.112.pkg Installing /packages/All/gdbm-1.23.pkg Installing /packages/All/libevent-2.1.12.pkg Installing /packages/All/gnome_subr-1.0.pkg Installing /packages/All/avahi-app-0.8_1.pkg ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/nettle-3.9.1.pkg Installing /packages/All/libtasn1-4.19.0.pkg Installing /packages/All/libunistring-1.1.pkg Installing /packages/All/libidn2-2.3.4.pkg Installing /packages/All/p11-kit-0.24.1_2.pkg Installing /packages/All/gnutls-3.7.9.pkg Installing /packages/All/libpaper-1.1.28.pkg Installing /packages/All/cups-2.4.6.pkg ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/qt5-widgets-5.15.8p157.pkg Installing /packages/All/qt5-printsupport-5.15.8p157.pkg Installing /packages/All/qscintilla2-qt5-2.13.3_1.pkg Installing /packages/All/qt5-concurrent-5.15.8p157.pkg Installing /packages/All/qt5-sql-5.15.8p157.pkg ===== Message from qt5-sql-5.15.8p157: -- To enable Qt database support, install the database plugin ports. The following plugin ports are available: - databases/qt5-sqldrivers-ibase InterBase/Firebird - databases/qt5-sqldrivers-mysql MySQL - databases/qt5-sqldrivers-odbc Open Database Connectivity - databases/qt5-sqldrivers-pgsql PostgreSQL - databases/qt5-sqldrivers-sqlite2 SQLite 2 - databases/qt5-sqldrivers-sqlite3 SQLite 3 - databases/qt5-sqldrivers-tds FreeTDS Installing /packages/All/qt5-declarative-5.15.8p21.pkg Installing /packages/All/qt5-connectivity-5.15.8p5.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/libedit-3.1.20221030,1.pkg Installing /packages/All/sqlite3-3.42.0,1.pkg Installing /packages/All/qt5-sqldrivers-sqlite3-5.15.8p157.pkg Installing /packages/All/qt5-help-5.15.8p1.pkg Installing /packages/All/qt5-serialport-5.15.8p0.pkg Installing /packages/All/qt5-location-5.15.8p3.pkg Installing /packages/All/alsa-lib-1.2.2_1.pkg ===== Message from alsa-lib-1.2.2_1: -- ===> NOTICE: The alsa-lib port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libunwind-20211201_2.pkg Installing /packages/All/gstreamer1-1.22.5.pkg Installing /packages/All/libmysofa-1.3.1.pkg Installing /packages/All/openal-soft-1.21.1_3.pkg Installing /packages/All/qt5-opengl-5.15.8p157.pkg Installing /packages/All/orc-0.4.34_1.pkg Installing /packages/All/libnice-0.1.21_1.pkg Installing /packages/All/iso-codes-4.7.pkg Installing /packages/All/gstreamer1-plugins-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-bad-1.22.5.pkg Installing /packages/All/libXv-1.0.12,1.pkg Installing /packages/All/qt5-multimedia-5.15.8p1.pkg Installing /packages/All/assimp-5.2.5.pkg Installing /packages/All/qt5-quick3d-5.15.8p1.pkg Installing /packages/All/qt5-remoteobjects-5.15.8p0.pkg Installing /packages/All/qt5-sensors-5.15.8p0.pkg Installing /packages/All/dotconf-1.3_1.pkg Installing /packages/All/libltdl-2.4.7.pkg Installing /packages/All/libogg-1.3.5,4.pkg Installing /packages/All/flac-1.4.3,1.pkg Installing /packages/All/lame-3.100_4.pkg Installing /packages/All/mpg123-1.31.3_1.pkg Installing /packages/All/opus-1.4.pkg Installing /packages/All/libvorbis-1.3.7_2,3.pkg Installing /packages/All/libsndfile-1.2.0_1.pkg Installing /packages/All/libao-1.2.0_5.pkg Installing /packages/All/pcaudiolib-1.2.pkg Installing /packages/All/espeak-ng-1.51.1_4.pkg Installing /packages/All/speech-dispatcher-0.11.2_2.pkg Installing /packages/All/qt5-speech-5.15.8p1_1.pkg Installing /packages/All/qt5-svg-5.15.8p8.pkg Installing /packages/All/qt5-testlib-5.15.8p157.pkg Installing /packages/All/qt5-webchannel-5.15.8p3.pkg Installing /packages/All/perl5-5.32.1_3.pkg Installing /packages/All/hyphen-2.8.8.pkg Installing /packages/All/giflib-5.2.1.pkg Installing /packages/All/libdeflate-1.18.pkg Installing /packages/All/jbigkit-2.1_1.pkg Installing /packages/All/tiff-4.4.0_1.pkg Installing /packages/All/webp-1.3.0_1.pkg Installing /packages/All/woff2-1.0.2_4.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/highway-1.0.4_1.pkg Installing /packages/All/Imath-3.1.9.pkg Installing /packages/All/openexr-3.1.9.pkg Installing /packages/All/shared-mime-info-2.2_1.pkg Building the Shared MIME-Info database cache Installing /packages/All/gdk-pixbuf2-2.42.10.pkg Generating gdk-pixbuf modules cache Installing /packages/All/libjxl-0.8.2.pkg Building the Shared MIME-Info database cache Generating gdk-pixbuf modules cache ===== Message from libjxl-0.8.2: -- Additional packages recommended for new users: - imlib2-jxl (e.g., feh, scrot) - kf5-kimageformats (e.g., nomacs, flameshot, skanlite) - gimp-jxl-plugin Installing /packages/All/vmaf-2.3.1.pkg Installing /packages/All/aom-3.6.1.pkg Installing /packages/All/fribidi-1.0.13.pkg Installing /packages/All/libunibreak-5.1,1.pkg Installing /packages/All/libass-0.17.1_1.pkg Installing /packages/All/dav1d-1.2.1.pkg Installing /packages/All/libpciaccess-0.17.pkg Installing /packages/All/libdrm-2.4.115,1.pkg Installing /packages/All/lcms2-2.15_1.pkg Installing /packages/All/shaderc-2023.4.pkg Installing /packages/All/libXrandr-1.5.2.pkg Installing /packages/All/vulkan-loader-1.3.257.pkg Installing /packages/All/libplacebo-5.264.1.pkg Installing /packages/All/svt-av1-1.6.0.pkg Installing /packages/All/argp-standalone-1.5.0.pkg Installing /packages/All/libv4l-1.23.0.pkg Installing /packages/All/libva-2.18.0.pkg Installing /packages/All/libvdpau-1.5.pkg Installing /packages/All/libvpx-1.13.0.pkg Installing /packages/All/libx264-0.164.3095.pkg Installing /packages/All/x265-3.4_2.pkg Installing /packages/All/ffmpeg-6.0,1.pkg Installing /packages/All/gstreamer1-libav-1.22.5.pkg Installing /packages/All/liba52-0.8.0.pkg Installing /packages/All/gstreamer1-plugins-ugly-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-a52dec-1.22.5.pkg Installing /packages/All/libdca-0.0.7.pkg Installing /packages/All/gstreamer1-plugins-dts-1.22.5.pkg Installing /packages/All/libdvdread-6.1.3.pkg Installing /packages/All/gstreamer1-plugins-dvdread-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-good-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-mpg123-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-ogg-1.22.5.pkg Installing /packages/All/pixman-0.42.2.pkg Installing /packages/All/cairo-1.17.4_2,3.pkg Installing /packages/All/libdatrie-0.2.13_1.pkg Installing /packages/All/libthai-0.1.29.pkg ===== Message from libthai-0.1.29: -- ===> NOTICE: The libthai port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/libXft-2.3.7.pkg Installing /packages/All/pango-1.50.14.pkg Installing /packages/All/gstreamer1-plugins-pango-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-png-1.22.5.pkg Installing /packages/All/libdvdnav-6.1.1.pkg Installing /packages/All/gstreamer1-plugins-resindvd-1.22.5.pkg Installing /packages/All/libtheora-1.1.1_7.pkg Installing /packages/All/gstreamer1-plugins-theora-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-vorbis-1.22.5.pkg Installing /packages/All/gstreamer1-plugins-core-1.22.5.pkg Installing /packages/All/libXcomposite-0.4.6,1.pkg Installing /packages/All/qt5-webkit-5.212.0.a4_13.pkg Installing /packages/All/qt5-websockets-5.15.8p2.pkg Installing /packages/All/qt5-x11extras-5.15.8p0.pkg Installing /packages/All/qt5-xml-5.15.8p157.pkg Installing /packages/All/qt5-xmlpatterns-5.15.8p0.pkg Installing /packages/All/pydbus-common-1.3.2.pkg Installing /packages/All/py39-dbus-1.3.2.pkg Installing /packages/All/py39-ply-3.11.pkg Installing /packages/All/py39-qt5-sip-12.11.1_1.pkg Installing /packages/All/py39-qtbuilder-1.14.1.pkg Installing /packages/All/py39-toml-0.10.2.pkg Installing /packages/All/py39-packaging-23.1.pkg Installing /packages/All/py39-sip-6.7.7,1.pkg Installing /packages/All/qt5-assistant-5.15.8p1.pkg Installing /packages/All/qt5-uiplugin-5.15.8p1.pkg Installing /packages/All/qt5-designer-5.15.8p1.pkg Installing /packages/All/jasper-4.0.0.pkg Installing /packages/All/lcms-1.19_6,1.pkg Installing /packages/All/libmng-1.0.10_3.pkg Installing /packages/All/qt5-imageformats-5.15.8p6_2.pkg Installing /packages/All/py39-qt5-pyqt-5.15.9_1.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default SUCCEEDED 00:00:56 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-ete3-3.1.3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-ete3-3.1.3 depends on file: /usr/local/sbin/pkg - found => ete3-3.1.3.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/e/ete3/ete3-3.1.3.tar.gz ete3-3.1.3.tar.gz 0% of 4656 kB 0 Bps ete3-3.1.3.tar.gz 4656 kB 49 MBps 00s ===> Fetching all distfiles required by py39-ete3-3.1.3 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-ete3-3.1.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-ete3-3.1.3 for building => SHA256 Checksum OK for ete3-3.1.3.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-ete3-3.1.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-ete3-3.1.3 for building ===> Extracting for py39-ete3-3.1.3 => SHA256 Checksum OK for ete3-3.1.3.tar.gz. Extracted Memory Use: 12.97M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-ete3-3.1.3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-ete3-3.1.3 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-ete3-3.1.3 depends on package: py39-lxml>0 - found ===> py39-ete3-3.1.3 depends on package: py39-six>0 - found ===> py39-ete3-3.1.3 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ete3-3.1.3 depends on file: /usr/local/bin/python3.9 - found ===> py39-ete3-3.1.3 depends on package: py39-qt5-pyqt>=5.15.9 - found ===> py39-ete3-3.1.3 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-ete3-3.1.3 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-ete3-3.1.3 depends on package: py39-lxml>0 - found ===> py39-ete3-3.1.3 depends on package: py39-six>0 - found ===> py39-ete3-3.1.3 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ete3-3.1.3 depends on file: /usr/local/bin/python3.9 - found ===> py39-ete3-3.1.3 depends on package: py39-qt5-pyqt>=5.15.9 - found ===> py39-ete3-3.1.3 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-ete3-3.1.3 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-ete3-3.1.3 running build running build_py creating build creating build/lib creating build/lib/ete3 copying ete3/__init__.py -> build/lib/ete3 copying ete3/_ph.py -> build/lib/ete3 copying ete3/citation.py -> build/lib/ete3 copying ete3/utils.py -> build/lib/ete3 copying ete3/version.py -> build/lib/ete3 running egg_info writing ete3.egg-info/PKG-INFO writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt writing top-level names to ete3.egg-info/top_level.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'ete3.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.clustering' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.clustering' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.clustering' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.clustering' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.coretype' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.coretype' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.coretype' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.coretype' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.ncbi_taxonomy' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.ncbi_taxonomy' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.ncbi_taxonomy' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.ncbi_taxonomy' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.nexml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.nexml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.nexml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.nexml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.orthoxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.orthoxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.orthoxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.orthoxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylo' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylo' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylo' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylo' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylomedb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylomedb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylomedb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylomedb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phyloxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phyloxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phyloxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phyloxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.CladeModelCD' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.CladeModelCD' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.CladeModelCD' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.CladeModelCD' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.L_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.L_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.L_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.L_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.XS_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.XS_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.XS_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.XS_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.slr' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.slr' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.slr' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.slr' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_ete_build' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_ete_build' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_ete_build' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_ete_build' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_issue258' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_issue258' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_issue258' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_issue258' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.task' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.task' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.task' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.task' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.workflow' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.workflow' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.workflow' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.workflow' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.webplugin' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.webplugin' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.webplugin' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.webplugin' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) creating build/lib/ete3/clustering copying ete3/clustering/__init__.py -> build/lib/ete3/clustering copying ete3/clustering/clustertree.py -> build/lib/ete3/clustering copying ete3/clustering/clustvalidation.py -> build/lib/ete3/clustering creating build/lib/ete3/coretype copying ete3/coretype/__init__.py -> build/lib/ete3/coretype copying ete3/coretype/arraytable.py -> build/lib/ete3/coretype copying ete3/coretype/seqgroup.py -> build/lib/ete3/coretype copying ete3/coretype/tree.py -> build/lib/ete3/coretype creating build/lib/ete3/evol copying ete3/evol/__init__.py -> build/lib/ete3/evol copying ete3/evol/control.py -> build/lib/ete3/evol copying ete3/evol/evoltree.py -> build/lib/ete3/evol copying ete3/evol/model.py -> build/lib/ete3/evol copying ete3/evol/utils.py -> build/lib/ete3/evol creating build/lib/ete3/evol/parser copying ete3/evol/parser/__init__.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/codemlparser.py -> build/lib/ete3/evol/parser copying ete3/evol/parser/slrparser.py -> build/lib/ete3/evol/parser creating build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/__init__.py -> build/lib/ete3/ncbi_taxonomy copying ete3/ncbi_taxonomy/ncbiquery.py -> build/lib/ete3/ncbi_taxonomy creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein copying ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src creating build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests creating build/lib/ete3/nexml copying ete3/nexml/__init__.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml.py -> build/lib/ete3/nexml copying ete3/nexml/_nexml_tree.py -> build/lib/ete3/nexml creating build/lib/ete3/orthoxml copying ete3/orthoxml/__init__.py -> build/lib/ete3/orthoxml copying ete3/orthoxml/_orthoxml.py -> build/lib/ete3/orthoxml creating build/lib/ete3/parser copying ete3/parser/__init__.py -> build/lib/ete3/parser copying ete3/parser/fasta.py -> build/lib/ete3/parser copying ete3/parser/newick.py -> build/lib/ete3/parser copying ete3/parser/paml.py -> build/lib/ete3/parser copying ete3/parser/phylip.py -> build/lib/ete3/parser copying ete3/parser/text_arraytable.py -> build/lib/ete3/parser creating build/lib/ete3/phylo copying ete3/phylo/__init__.py -> build/lib/ete3/phylo copying ete3/phylo/evolevents.py -> build/lib/ete3/phylo copying ete3/phylo/phylotree.py -> build/lib/ete3/phylo copying ete3/phylo/reconciliation.py -> build/lib/ete3/phylo copying ete3/phylo/spoverlap.py -> build/lib/ete3/phylo creating build/lib/ete3/phylomedb copying ete3/phylomedb/__init__.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB.py -> build/lib/ete3/phylomedb copying ete3/phylomedb/phylomeDB3.py -> build/lib/ete3/phylomedb creating build/lib/ete3/phyloxml copying ete3/phyloxml/__init__.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml.py -> build/lib/ete3/phyloxml copying ete3/phyloxml/_phyloxml_tree.py -> build/lib/ete3/phyloxml creating build/lib/ete3/test copying ete3/test/__init__.py -> build/lib/ete3/test copying ete3/test/datasets.py -> build/lib/ete3/test copying ete3/test/test_all.py -> build/lib/ete3/test copying ete3/test/test_api.py -> build/lib/ete3/test copying ete3/test/test_arraytable.py -> build/lib/ete3/test copying ete3/test/test_circle_label.py -> build/lib/ete3/test copying ete3/test/test_clustertree.py -> build/lib/ete3/test copying ete3/test/test_ete_evol.py -> build/lib/ete3/test copying ete3/test/test_evol.py -> build/lib/ete3/test copying ete3/test/test_interop.py -> build/lib/ete3/test copying ete3/test/test_ncbiquery.py -> build/lib/ete3/test copying ete3/test/test_phylotree.py -> build/lib/ete3/test copying ete3/test/test_seqgroup.py -> build/lib/ete3/test copying ete3/test/test_tree.py -> build/lib/ete3/test copying ete3/test/test_xml_parsers.py -> build/lib/ete3/test creating build/lib/ete3/test/ete_evol_data creating build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> build/lib/ete3/test/ete_evol_data/CladeModelCD copying ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> build/lib/ete3/test/ete_evol_data/CladeModelCD creating build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> build/lib/ete3/test/ete_evol_data/L_example copying ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> build/lib/ete3/test/ete_evol_data/L_example creating build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/S_example copying ete3/test/ete_evol_data/S_example/tree.nw -> build/lib/ete3/test/ete_evol_data/S_example creating build/lib/ete3/test/ete_evol_data/S_example/paml creating build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 copying ete3/test/ete_evol_data/S_example/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 copying ete3/test/ete_evol_data/S_example/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/M2 creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA copying ete3/test/ete_evol_data/S_example/paml/bsA/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA creating build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 copying ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1 creating build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/out -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb copying ete3/test/ete_evol_data/S_example/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/S_example/paml/fb creating build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/ali.fasta -> build/lib/ete3/test/ete_evol_data/XS_example copying ete3/test/ete_evol_data/XS_example/tree.nw -> build/lib/ete3/test/ete_evol_data/XS_example creating build/lib/ete3/test/ete_evol_data/protamine creating build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 copying ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> build/lib/ete3/test/ete_evol_data/protamine/PRM1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb creating build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr copying ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr creating build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.aa.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/NUP62.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.alg.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/P53.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__init__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/__main__.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/cog_seqs.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg1.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg2.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_alg3.nt.fa -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/fake_cogs.tsv -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_genetree.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_manual_alg.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_modeltest.py -> build/lib/ete3/test/test_ete_build copying ete3/test/test_ete_build/test_sptree.py -> build/lib/ete3/test/test_ete_build creating build/lib/ete3/test/test_issue258 copying ete3/test/test_issue258/issue258.py -> build/lib/ete3/test/test_issue258 creating build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/__init__.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barchart_and_piechart_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/barcharts.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/bubble_map.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/chimp.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/dog.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_grid.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_positions.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/face_rotation.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fish.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/float_piechart.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/floating_piecharts.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/fly.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/human.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/img_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/item_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/motifs.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/mouse.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/new_seq_face.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_background.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/node_style.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/phylotree_visualization.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/random_draw.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/rotated_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seq_motif_faces.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/seqmotif.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/test_all_treeview.py -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.png -> build/lib/ete3/test/test_treeview copying ete3/test/test_treeview/tree_faces.py -> build/lib/ete3/test/test_treeview creating build/lib/ete3/tools copying ete3/tools/__init__.py -> build/lib/ete3/tools copying ete3/tools/common.py -> build/lib/ete3/tools copying ete3/tools/ete.py -> build/lib/ete3/tools copying ete3/tools/ete_annotate.py -> build/lib/ete3/tools copying ete3/tools/ete_build.cfg -> build/lib/ete3/tools copying ete3/tools/ete_build.py -> build/lib/ete3/tools copying ete3/tools/ete_compare.py -> build/lib/ete3/tools copying ete3/tools/ete_evol.py -> build/lib/ete3/tools copying ete3/tools/ete_expand.py -> build/lib/ete3/tools copying ete3/tools/ete_extract.py -> build/lib/ete3/tools copying ete3/tools/ete_generate.py -> build/lib/ete3/tools copying ete3/tools/ete_maptrees.py -> build/lib/ete3/tools copying ete3/tools/ete_mod.py -> build/lib/ete3/tools copying ete3/tools/ete_ncbiquery.py -> build/lib/ete3/tools copying ete3/tools/ete_split.py -> build/lib/ete3/tools copying ete3/tools/ete_upgrade_tools.py -> build/lib/ete3/tools copying ete3/tools/ete_view.py -> build/lib/ete3/tools copying ete3/tools/utils.py -> build/lib/ete3/tools creating build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/__init__.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/apps.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configcheck.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/configobj.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/curses_gui.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/db.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/errors.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/getch.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/interface.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/logger.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_job.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/master_task.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/ordereddict.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/scheduler.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/seqio.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/sge.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/utils.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/validate.py -> build/lib/ete3/tools/ete_build_lib copying ete3/tools/ete_build_lib/visualize.py -> build/lib/ete3/tools/ete_build_lib creating build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/__init__.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/clustalo.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_creator.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/cog_selector.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/concat_alg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dialigntx.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummyalg.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/dummytree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/fasttree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/iqtree.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/jmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/mafft.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/merger.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/meta_aligner.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/msf.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/muscle.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/phyml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/pmodeltest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/prottest2.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/raxml.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/tcoffee.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/trimal.py -> build/lib/ete3/tools/ete_build_lib/task copying ete3/tools/ete_build_lib/task/uhire.py -> build/lib/ete3/tools/ete_build_lib/task creating build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/__init__.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/common.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/genetree.py -> build/lib/ete3/tools/ete_build_lib/workflow copying ete3/tools/ete_build_lib/workflow/supermatrix.py -> build/lib/ete3/tools/ete_build_lib/workflow creating build/lib/ete3/treeview copying ete3/treeview/__init__.py -> build/lib/ete3/treeview copying ete3/treeview/_about.py -> build/lib/ete3/treeview copying ete3/treeview/_mainwindow.py -> build/lib/ete3/treeview copying ete3/treeview/_open_newick.py -> build/lib/ete3/treeview copying ete3/treeview/_search_dialog.py -> build/lib/ete3/treeview copying ete3/treeview/_show_codeml.py -> build/lib/ete3/treeview copying ete3/treeview/_show_newick.py -> build/lib/ete3/treeview copying ete3/treeview/about.ui -> build/lib/ete3/treeview copying ete3/treeview/clean_search.png -> build/lib/ete3/treeview copying ete3/treeview/drawer.py -> build/lib/ete3/treeview copying ete3/treeview/ete_icon.png -> build/lib/ete3/treeview copying ete3/treeview/ete_logo.png -> build/lib/ete3/treeview copying ete3/treeview/ete_qt4app.ui -> build/lib/ete3/treeview copying ete3/treeview/ete_resources.qrc -> build/lib/ete3/treeview copying ete3/treeview/ete_resources_rc.py -> build/lib/ete3/treeview copying ete3/treeview/export_pdf.png -> build/lib/ete3/treeview copying ete3/treeview/faces.py -> build/lib/ete3/treeview copying ete3/treeview/fileopen.png -> build/lib/ete3/treeview copying ete3/treeview/filesave.png -> build/lib/ete3/treeview copying ete3/treeview/fit_region.png -> build/lib/ete3/treeview copying ete3/treeview/fit_tree.png -> build/lib/ete3/treeview copying ete3/treeview/force_topo.png -> build/lib/ete3/treeview copying ete3/treeview/image_properties.ui -> build/lib/ete3/treeview copying ete3/treeview/layouts.py -> build/lib/ete3/treeview copying ete3/treeview/main.py -> build/lib/ete3/treeview copying ete3/treeview/node_gui_actions.py -> build/lib/ete3/treeview copying ete3/treeview/open_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/qt.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_circular_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_compile_resources.sh -> build/lib/ete3/treeview copying ete3/treeview/qt4_face_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_gui.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_rect_render.py -> build/lib/ete3/treeview copying ete3/treeview/qt4_render.py -> build/lib/ete3/treeview copying ete3/treeview/search.png -> build/lib/ete3/treeview copying ete3/treeview/search_dialog.ui -> build/lib/ete3/treeview copying ete3/treeview/show_dist.png -> build/lib/ete3/treeview copying ete3/treeview/show_names.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.png -> build/lib/ete3/treeview copying ete3/treeview/show_newick.ui -> build/lib/ete3/treeview copying ete3/treeview/show_support.png -> build/lib/ete3/treeview copying ete3/treeview/svg_colors.py -> build/lib/ete3/treeview copying ete3/treeview/templates.py -> build/lib/ete3/treeview copying ete3/treeview/x_expand.png -> build/lib/ete3/treeview copying ete3/treeview/x_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/y_expand.png -> build/lib/ete3/treeview copying ete3/treeview/y_reduce.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_in.png -> build/lib/ete3/treeview copying ete3/treeview/zoom_out.png -> build/lib/ete3/treeview creating build/lib/ete3/webplugin copying ete3/webplugin/__init__.py -> build/lib/ete3/webplugin copying ete3/webplugin/webapp.py -> build/lib/ete3/webplugin SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-ete3-3.1.3 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-ete3-3.1.3 depends on package: py39-lxml>0 - found ===> py39-ete3-3.1.3 depends on package: py39-six>0 - found ===> py39-ete3-3.1.3 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ete3-3.1.3 depends on file: /usr/local/bin/python3.9 - found ===> py39-ete3-3.1.3 depends on package: py39-qt5-pyqt>=5.15.9 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-ete3-3.1.3 ===> py39-ete3-3.1.3 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-ete3-3.1.3 depends on package: py39-lxml>0 - found ===> py39-ete3-3.1.3 depends on package: py39-six>0 - found ===> py39-ete3-3.1.3 depends on package: py39-setuptools>=63.1.0 - found ===> py39-ete3-3.1.3 depends on file: /usr/local/bin/python3.9 - found ===> py39-ete3-3.1.3 depends on package: py39-qt5-pyqt>=5.15.9 - found ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing ete3.egg-info/PKG-INFO writing dependency_links to ete3.egg-info/dependency_links.txt writing entry points to ete3.egg-info/entry_points.txt writing top-level names to ete3.egg-info/top_level.txt reading manifest file 'ete3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'doc' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '~*' found anywhere in distribution warning: no previously-included files matching '*~' found anywhere in distribution warning: manifest_maker: MANIFEST.in, line 17: 'global-exclude' expects ... warning: no previously-included files matching '*.gz' found anywhere in distribution adding license file 'LICENSE' writing manifest file 'ete3.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.clustering' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.clustering' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.clustering' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.clustering' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.coretype' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.coretype' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.coretype' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.coretype' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.evol.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.evol.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.evol.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.evol.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.ncbi_taxonomy' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.ncbi_taxonomy' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.ncbi_taxonomy' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.ncbi_taxonomy' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.nexml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.nexml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.nexml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.nexml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.orthoxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.orthoxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.orthoxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.orthoxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.parser' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.parser' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.parser' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.parser' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylo' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylo' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylo' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylo' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phylomedb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phylomedb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phylomedb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phylomedb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.phyloxml' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.phyloxml' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.phyloxml' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.phyloxml' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.CladeModelCD' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.CladeModelCD' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.CladeModelCD' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.CladeModelCD' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.L_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.L_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.L_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.L_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.bsA1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.bsA1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.bsA1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.bsA1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.S_example.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.S_example.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.S_example.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.S_example.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.XS_example' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.XS_example' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.XS_example' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.XS_example' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M0' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M1' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M2' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M7' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.M8' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.paml.fb' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.ete_evol_data.protamine.PRM1.slr' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.ete_evol_data.protamine.PRM1.slr' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.ete_evol_data.protamine.PRM1.slr' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.ete_evol_data.protamine.PRM1.slr' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_ete_build' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_ete_build' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_ete_build' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_ete_build' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_issue258' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_issue258' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_issue258' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_issue258' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.test.test_treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.test.test_treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.test.test_treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.test.test_treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.task' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.task' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.task' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.task' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.tools.ete_build_lib.workflow' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.tools.ete_build_lib.workflow' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.tools.ete_build_lib.workflow' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.tools.ete_build_lib.workflow' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.treeview' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.treeview' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.treeview' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.treeview' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'ete3.webplugin' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'ete3.webplugin' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'ete3.webplugin' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'ete3.webplugin' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running install_lib creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3 copying build/lib/ete3/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3 copying build/lib/ete3/_ph.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3 copying build/lib/ete3/citation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3 copying build/lib/ete3/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3 copying build/lib/ete3/version.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/clustering copying build/lib/ete3/clustering/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustertree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/clustering copying build/lib/ete3/clustering/clustvalidation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/clustering creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype copying build/lib/ete3/coretype/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype copying build/lib/ete3/coretype/arraytable.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype copying build/lib/ete3/coretype/seqgroup.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype copying build/lib/ete3/coretype/tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol copying build/lib/ete3/evol/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol copying build/lib/ete3/evol/control.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol copying build/lib/ete3/evol/evoltree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol copying build/lib/ete3/evol/model.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol copying build/lib/ete3/evol/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/codemlparser.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/parser copying build/lib/ete3/evol/parser/slrparser.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/parser creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy copying build/lib/ete3/ncbi_taxonomy/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy copying build/lib/ete3/ncbi_taxonomy/ncbiquery.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/.gitignore -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/EXAMPLE -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/Makefile -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/README -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/src/levenshtein.c -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/src creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/README -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests copying build/lib/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests/levenshtein-test.sql -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/SQLite-Levenshtein/tests creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/nexml copying build/lib/ete3/nexml/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/nexml copying build/lib/ete3/nexml/_nexml_tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/nexml creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/orthoxml copying build/lib/ete3/orthoxml/_orthoxml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/orthoxml creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser copying build/lib/ete3/parser/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser copying build/lib/ete3/parser/fasta.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser copying build/lib/ete3/parser/newick.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser copying build/lib/ete3/parser/paml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser copying build/lib/ete3/parser/phylip.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser copying build/lib/ete3/parser/text_arraytable.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo copying build/lib/ete3/phylo/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo copying build/lib/ete3/phylo/evolevents.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo copying build/lib/ete3/phylo/phylotree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo copying build/lib/ete3/phylo/reconciliation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo copying build/lib/ete3/phylo/spoverlap.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylomedb copying build/lib/ete3/phylomedb/phylomeDB3.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylomedb creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phyloxml copying build/lib/ete3/phyloxml/_phyloxml_tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phyloxml creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/datasets.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_all.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_api.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_arraytable.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_circle_label.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_clustertree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_ete_evol.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_evol.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_interop.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_ncbiquery.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_phylotree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_seqgroup.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_tree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test copying build/lib/ete3/test/test_xml_parsers.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/CladeModelCD copying build/lib/ete3/test/ete_evol_data/CladeModelCD/ECP_EDN_15.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/CladeModelCD creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/alignment_L_measuring_evol.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/L_example copying build/lib/ete3/test/ete_evol_data/L_example/measuring_L_tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/L_example creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example copying build/lib/ete3/test/ete_evol_data/S_example/ali.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example copying build/lib/ete3/test/ete_evol_data/S_example/tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M1/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M1 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 copying build/lib/ete3/test/ete_evol_data/S_example/paml/M2/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/M2 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 copying build/lib/ete3/test/ete_evol_data/S_example/paml/bsA1/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/bsA1 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb copying build/lib/ete3/test/ete_evol_data/S_example/paml/fb/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/S_example/paml/fb creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/ali.fasta -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/XS_example copying build/lib/ete3/test/ete_evol_data/XS_example/tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/XS_example creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/alignments.fasta_ali -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/tree.nw -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M0/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M0 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/M1.out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M1/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M1 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/M2.out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M2/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M2 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/M7.out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M7/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M7 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/M8.out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/M8/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/M8 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/fb.out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst.fb -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/paml/fb/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/paml/fb creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dN -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.dS -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/2NG.t -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/4fold.nuc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/algn -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/fb.out -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/lnf -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst.fb -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rst1 -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/rub -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/slr.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tmp.ctl -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr copying build/lib/ete3/test/ete_evol_data/protamine/PRM1/slr/tree.slr -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/ete_evol_data/protamine/PRM1/slr creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.aa.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/NUP62.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.alg.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/P53.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/__main__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/cog_seqs.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg1.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg2.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_alg3.nt.fa -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/fake_cogs.tsv -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_genetree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_manual_alg.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_modeltest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build copying build/lib/ete3/test/test_ete_build/test_sptree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_issue258 copying build/lib/ete3/test/test_issue258/issue258.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_issue258 creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barchart_and_piechart_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/barcharts.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/bubble_map.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/chimp.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/dog.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_grid.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_positions.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/face_rotation.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fish.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/float_piechart.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/floating_piecharts.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/fly.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/human.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/img_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/item_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/motifs.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/mouse.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/new_seq_face.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_background.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/node_style.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/phylotree_visualization.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/random_draw.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/rotated_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seq_motif_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/seqmotif.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/test_all_treeview.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview copying build/lib/ete3/test/test_treeview/tree_faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/common.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_annotate.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.cfg -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_build.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_compare.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_evol.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_expand.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_extract.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_generate.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_maptrees.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_mod.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_ncbiquery.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_split.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_upgrade_tools.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/ete_view.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools copying build/lib/ete3/tools/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/apps.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configcheck.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/configobj.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/curses_gui.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/db.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/errors.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/getch.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/interface.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/logger.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/master_job.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/master_task.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/ordereddict.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/scheduler.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/seqio.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/sge.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/utils.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/validate.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib copying build/lib/ete3/tools/ete_build_lib/visualize.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/clustalo.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_creator.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/cog_selector.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/concat_alg.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dialigntx.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummyalg.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/dummytree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/fasttree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/iqtree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/jmodeltest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/mafft.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/merger.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/meta_aligner.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/msf.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/muscle.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/phyml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/pmodeltest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/prottest2.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/raxml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/tcoffee.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/trimal.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task copying build/lib/ete3/tools/ete_build_lib/task/uhire.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/common.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/genetree.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow copying build/lib/ete3/tools/ete_build_lib/workflow/supermatrix.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/_about.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/_mainwindow.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/_open_newick.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/_search_dialog.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_codeml.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/_show_newick.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/about.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/clean_search.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/drawer.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_icon.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_logo.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_qt4app.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources.qrc -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/ete_resources_rc.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/export_pdf.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/faces.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/fileopen.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/filesave.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_region.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/fit_tree.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/force_topo.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/image_properties.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/layouts.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/main.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/node_gui_actions.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/open_newick.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_circular_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_compile_resources.sh -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_face_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_gui.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_rect_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/qt4_render.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/search.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/search_dialog.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_dist.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_names.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_newick.ui -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/show_support.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/svg_colors.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/templates.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_expand.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/x_reduce.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_expand.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/y_reduce.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_in.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview copying build/lib/ete3/treeview/zoom_out.png -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview creating /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/__init__.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/webplugin copying build/lib/ete3/webplugin/webapp.py -> /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/webplugin byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/_ph.py to _ph.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/citation.py to citation.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/version.py to version.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/clustering/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/clustering/clustertree.py to clustertree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/clustering/clustvalidation.py to clustvalidation.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype/arraytable.py to arraytable.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype/seqgroup.py to seqgroup.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/coretype/tree.py to tree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/control.py to control.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/evoltree.py to evoltree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/model.py to model.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/parser/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/parser/codemlparser.py to codemlparser.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/evol/parser/slrparser.py to slrparser.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/ncbi_taxonomy/ncbiquery.py to ncbiquery.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/nexml/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/nexml/_nexml.py to _nexml.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/nexml/_nexml_tree.py to _nexml_tree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/orthoxml/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/orthoxml/_orthoxml.py to _orthoxml.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser/fasta.py to fasta.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser/newick.py to newick.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser/paml.py to paml.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser/phylip.py to phylip.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/parser/text_arraytable.py to text_arraytable.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo/evolevents.py to evolevents.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo/phylotree.py to phylotree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo/reconciliation.py to reconciliation.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylo/spoverlap.py to spoverlap.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylomedb/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylomedb/phylomeDB.py to phylomeDB.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phylomedb/phylomeDB3.py to phylomeDB3.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phyloxml/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phyloxml/_phyloxml.py to _phyloxml.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/phyloxml/_phyloxml_tree.py to _phyloxml_tree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/datasets.py to datasets.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_all.py to test_all.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_api.py to test_api.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_arraytable.py to test_arraytable.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_circle_label.py to test_circle_label.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_clustertree.py to test_clustertree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_evol.py to test_ete_evol.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_evol.py to test_evol.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_interop.py to test_interop.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ncbiquery.py to test_ncbiquery.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_phylotree.py to test_phylotree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_seqgroup.py to test_seqgroup.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_tree.py to test_tree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_xml_parsers.py to test_xml_parsers.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build/__main__.py to __main__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build/test_genetree.py to test_genetree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build/test_manual_alg.py to test_manual_alg.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build/test_modeltest.py to test_modeltest.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_ete_build/test_sptree.py to test_sptree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_issue258/issue258.py to issue258.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/barchart_and_piechart_faces.py to barchart_and_piechart_faces.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/bubble_map.py to bubble_map.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/face_grid.py to face_grid.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/face_positions.py to face_positions.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/face_rotation.py to face_rotation.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/floating_piecharts.py to floating_piecharts.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/img_faces.py to img_faces.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/item_faces.py to item_faces.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/new_seq_face.py to new_seq_face.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/node_background.py to node_background.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/node_style.py to node_style.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/phylotree_visualization.py to phylotree_visualization.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/random_draw.py to random_draw.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/seq_motif_faces.py to seq_motif_faces.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/test_all_treeview.py to test_all_treeview.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/test/test_treeview/tree_faces.py to tree_faces.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/common.py to common.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete.py to ete.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_annotate.py to ete_annotate.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build.py to ete_build.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_compare.py to ete_compare.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_evol.py to ete_evol.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_expand.py to ete_expand.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_extract.py to ete_extract.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_generate.py to ete_generate.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_maptrees.py to ete_maptrees.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_mod.py to ete_mod.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_ncbiquery.py to ete_ncbiquery.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_split.py to ete_split.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_upgrade_tools.py to ete_upgrade_tools.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_view.py to ete_view.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/apps.py to apps.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/configcheck.py to configcheck.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/configobj.py to configobj.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/curses_gui.py to curses_gui.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/db.py to db.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/errors.py to errors.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/getch.py to getch.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/interface.py to interface.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/logger.py to logger.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/master_job.py to master_job.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/master_task.py to master_task.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/ordereddict.py to ordereddict.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/scheduler.py to scheduler.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/seqio.py to seqio.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/sge.py to sge.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/utils.py to utils.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/validate.py to validate.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/visualize.py to visualize.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/clustalo.py to clustalo.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/cog_creator.py to cog_creator.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/cog_selector.py to cog_selector.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/concat_alg.py to concat_alg.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/dialigntx.py to dialigntx.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/dummyalg.py to dummyalg.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/dummytree.py to dummytree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/fasttree.py to fasttree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/iqtree.py to iqtree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/jmodeltest.py to jmodeltest.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/mafft.py to mafft.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/merger.py to merger.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/meta_aligner.py to meta_aligner.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/msf.py to msf.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/muscle.py to muscle.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/phyml.py to phyml.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/pmodeltest.py to pmodeltest.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/prottest.py to prottest.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/prottest2.py to prottest2.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/raxml.py to raxml.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/tcoffee.py to tcoffee.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/trimal.py to trimal.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/task/uhire.py to uhire.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow/common.py to common.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow/genetree.py to genetree.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/tools/ete_build_lib/workflow/supermatrix.py to supermatrix.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/_about.py to _about.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/_mainwindow.py to _mainwindow.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/_open_newick.py to _open_newick.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/_search_dialog.py to _search_dialog.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/_show_codeml.py to _show_codeml.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/_show_newick.py to _show_newick.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/drawer.py to drawer.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/ete_resources_rc.py to ete_resources_rc.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/faces.py to faces.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/layouts.py to layouts.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/main.py to main.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/node_gui_actions.py to node_gui_actions.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/qt.py to qt.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/qt4_circular_render.py to qt4_circular_render.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/qt4_face_render.py to qt4_face_render.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/qt4_gui.py to qt4_gui.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/qt4_rect_render.py to qt4_rect_render.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/qt4_render.py to qt4_render.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/svg_colors.py to svg_colors.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/treeview/templates.py to templates.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/webplugin/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3/webplugin/webapp.py to webapp.cpython-39.pyc writing byte-compilation script '/tmp/tmpcjjn2k33.py' /usr/local/bin/python3.9 /tmp/tmpcjjn2k33.py removing /tmp/tmpcjjn2k33.py running install_data creating /construction/biology/py-ete3/stage/usr/local/ete3 creating /construction/biology/py-ete3/stage/usr/local/ete3/tools copying ete3/tools/ete_build.cfg -> /construction/biology/py-ete3/stage/usr/local/ete3/tools running install_egg_info Copying ete3.egg-info to /construction/biology/py-ete3/stage/usr/local/lib/python3.9/site-packages/ete3-3.1.3-py3.9.egg-info running install_scripts Installing ete3 script to /construction/biology/py-ete3/stage/usr/local/bin writing list of installed files to '/construction/biology/py-ete3/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/ete3 --> bin/ete3-3.9 Link: @bin/ete3 --> bin/ete3-3.9 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-ete3-3.1.3 file sizes/checksums [741]: 0% file sizes/checksums [741]: 13% file sizes/checksums [741]: 26% file sizes/checksums [741]: 40% file sizes/checksums [741]: 53% file sizes/checksums [741]: 67% file sizes/checksums [741]: 80% file sizes/checksums [741]: 94% file sizes/checksums [741]: 100% Service unavailablepacking files [741]: 0% packing files [741]: 13% packing files [741]: 26% packing files [741]: 40% packing files [741]: 53% packing files [741]: 67% packing files [741]: 80% packing files [741]: 94% packing files [741]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:01:09