------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 FLAVOR=py39 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/biology/py-biom-format XDG_CONFIG_HOME=/construction/biology/py-biom-format XDG_CACHE_HOME=/construction/biology/py-biom-format/.cache HOME=/construction/biology/py-biom-format TMPDIR="/tmp" PATH=/construction/biology/py-biom-format/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-biom-format/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/py-biom-format XDG_CONFIG_HOME=/construction/biology/py-biom-format XDG_CACHE_HOME=/construction/biology/py-biom-format/.cache HOME=/construction/biology/py-biom-format TMPDIR="/tmp" PATH=/construction/biology/py-biom-format/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/py-biom-format/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/py-biom-format/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/py39-biom-format" EXAMPLESDIR="share/examples/py39-biom-format" DATADIR="share/py39-biom-format" WWWDIR="www/py39-biom-format" ETCDIR="etc/py39-biom-format" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/py39-biom-format DOCSDIR=/usr/local/share/doc/py39-biom-format EXAMPLESDIR=/usr/local/share/examples/py39-biom-format WWWDIR=/usr/local/www/py39-biom-format ETCDIR=/usr/local/etc/py39-biom-format SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_9.pkg ===== Message from metis-5.1.0_9: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://docs.freebsd.org/en/articles/contributing/#ports-contributing Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gmp-6.2.1.pkg Installing /packages/All/mpfr-4.2.0_1,1.pkg Installing /packages/All/mpc-1.3.1_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/liblz4-1.9.4,1.pkg Installing /packages/All/zstd-1.5.5.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/binutils-2.40_4,1.pkg Installing /packages/All/gcc12-12.2.0_6.pkg ===== Message from gcc12-12.2.0_6: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc12 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.20_1,1.pkg Installing /packages/All/suitesparse-config-7.0.1_1.pkg Installing /packages/All/suitesparse-amd-3.0.3_1.pkg Installing /packages/All/suitesparse-camd-3.0.3_1.pkg Installing /packages/All/suitesparse-colamd-3.0.3_1.pkg Installing /packages/All/suitesparse-ccolamd-3.0.3_1.pkg Installing /packages/All/suitesparse-cholmod-4.0.3_1.pkg Installing /packages/All/suitesparse-umfpack-6.1.0_1.pkg Installing /packages/All/libffi-3.4.4.pkg Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/mpdecimal-2.5.1.pkg Installing /packages/All/ncurses-6.4.pkg ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/readline-8.2.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/python39-3.9.17.pkg ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/py39-setuptools-63.1.0_1.pkg Installing /packages/All/py39-numpy-1.24.1_4,1.pkg Installing /packages/All/py39-cython-0.29.35.pkg Installing /packages/All/ccache-3.7.12_4.pkg Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) create symlink for gcc12 create symlink for gcc12 (world) create symlink for g++12 create symlink for g++12 (world) create symlink for cpp12 create symlink for cpp12 (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/py39-zipp-3.15.0.pkg Installing /packages/All/py39-importlib-metadata-6.7.0.pkg Installing /packages/All/py39-click-8.1.3.pkg Installing /packages/All/py39-future-0.18.3.pkg Installing /packages/All/blas-3.11.0_1.pkg Installing /packages/All/py39-scipy-1.10.1_1.pkg Installing /packages/All/py39-six-1.16.0.pkg Installing /packages/All/py39-dateutil-2.8.2.pkg Installing /packages/All/py39-pytz-2023.3,1.pkg UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default Installing /packages/All/libedit-3.1.20221030,1.pkg Installing /packages/All/sqlite3-3.42.0,1.pkg Installing /packages/All/py39-sqlite3-3.9.17_7.pkg Installing /packages/All/py39-tzdata-2023.3_1.pkg Installing /packages/All/py39-bottleneck-1.3.7_1.pkg Installing /packages/All/py39-numexpr-2.8.4_1.pkg Installing /packages/All/py39-pandas-2.0.2,1.pkg ===== Message from py39-pandas-2.0.2,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. Installing /packages/All/libaec-1.0.6.pkg Installing /packages/All/hdf5-1.12.2_2,1.pkg Installing /packages/All/py39-h5py-3.8.0_1.pkg UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED databases/sqlite3 -> use databases/sqlite3@default SUCCEEDED 00:00:16 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-biom-format-2.1.10_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-biom-format-2.1.10_1 for building => SHA256 Checksum OK for biom-format-2.1.10.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py39-biom-format-2.1.10_1 for building ===> Extracting for py39-biom-format-2.1.10_1 => SHA256 Checksum OK for biom-format-2.1.10.tar.gz. /bin/rm -f -r /construction/biology/py-biom-format/biom-format-2.1.10/tests Extracted Memory Use: 50.26M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py39-biom-format-2.1.10_1 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py39-biom-format-2.1.10_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-biom-format-2.1.10_1 depends on executable: cython-3.9 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py39-biom-format-2.1.10_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-biom-format-2.1.10_1 depends on executable: cython-3.9 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/bin/python3.9 - found ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/bin/ccache - found ===> Configuring for py39-biom-format-2.1.10_1 Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx /usr/local/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-biom-format/biom-format-2.1.10/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) [2/3] Cythonizing biom/_subsample.pyx /usr/local/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-biom-format/biom-format-2.1.10/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) [3/3] Cythonizing biom/_transform.pyx /usr/local/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-biom-format/biom-format-2.1.10/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) running config SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py39-biom-format-2.1.10_1 running build running build_py creating build creating build/lib.dragonfly-6.5-x86_64-cpython-39 creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/exception.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/util.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/table.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/parse.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/err.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests copying biom/tests/long_lines.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests copying biom/tests/test_parse.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests copying biom/tests/test_table.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests copying biom/tests/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests copying biom/tests/test_util.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests copying biom/tests/test_err.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/installation_informer.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/table_subsetter.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/util.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/metadata_exporter.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/table_validator.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/table_normalizer.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/uc_processor.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/metadata_adder.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/table_converter.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/table_summarizer.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/table_head.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli copying biom/cli/table_ids.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data copying biom/tests/test_data/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.assets' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.assets' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.bench_tables' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.bench_tables' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.test_cli.test_data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) copying biom/_filter.pyx -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/_subsample.pyx -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom copying biom/_transform.pyx -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom/assets copying biom/assets/exercise_api.py -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/assets copying biom/assets/exercise_cli.sh -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/assets creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data copying biom/tests/test_data/empty.biom -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data copying biom/tests/test_data/test.biom -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data copying biom/tests/test_data/test.json -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data creating build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.dragonfly-6.5-x86_64-cpython-39 creating build/temp.dragonfly-6.5-x86_64-cpython-39/biom cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c biom/_filter.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/biom/_filter.o In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_filter.c:772: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-6.5-x86_64-cpython-39/biom/_filter.o -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_filter.cpython-39.so building 'biom._transform' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c biom/_transform.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/biom/_transform.o In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_transform.c:772: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-6.5-x86_64-cpython-39/biom/_transform.o -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_transform.cpython-39.so building 'biom._subsample' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/lib/python3.9/site-packages/numpy/core/include -I/usr/local/include/python3.9 -c biom/_subsample.c -o build/temp.dragonfly-6.5-x86_64-cpython-39/biom/_subsample.o In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, from biom/_subsample.c:772: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-6.5-x86_64-cpython-39/biom/_subsample.o -L/usr/local/lib -o build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_subsample.cpython-39.so SUCCEEDED 00:00:14 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py39-biom-format-2.1.10_1 depends on package: py39-click>0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-future>=0.16.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-scipy>=1 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-pandas>=0.20.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-h5py>=2.2.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-six>=1.10.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py39-biom-format-2.1.10_1 ===> py39-biom-format-2.1.10_1 depends on package: py39-click>0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-numpy>=1.16,1<1.25,1 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-future>=0.16.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-scipy>=1 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-pandas>=0.20.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-h5py>=2.2.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-six>=1.10.0 - found ===> py39-biom-format-2.1.10_1 depends on package: py39-setuptools>=63.1.0 - found ===> py39-biom-format-2.1.10_1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list running install /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution adding license file 'COPYING.txt' writing manifest file 'biom_format.egg-info/SOURCES.txt' /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.assets' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.assets' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.assets' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.bench_tables' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.bench_tables' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.bench_tables' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) /usr/local/lib/python3.9/site-packages/setuptools/command/build_py.py:153: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`. !! ############################ # Package would be ignored # ############################ Python recognizes 'biom.tests.test_cli.test_data' as an importable package, but it is not listed in the `packages` configuration of setuptools. 'biom.tests.test_cli.test_data' has been automatically added to the distribution only because it may contain data files, but this behavior is likely to change in future versions of setuptools (and therefore is considered deprecated). Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using the `packages` configuration field or the proper discovery methods (for example by using `find_namespace_packages(...)`/`find_namespace:` instead of `find_packages(...)`/`find:`). You can read more about "package discovery" and "data files" on setuptools documentation page. !! check.warn(importable) running build_ext running install_lib creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9 creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_transform.cpython-39.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/exception.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/parse.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/err.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/long_lines.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_parse.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_err.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/bad_table.txt -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/bad_table.txt.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/empty.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/no-contents.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/test.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/test.json -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_data/test.json.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_validate_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_summarize_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_table_converter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_table_normalizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_uc_processor.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_subset_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_show_install_info.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_add_metadata.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data/test.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/test_cli/test_data/test.json -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_data creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/bench_tables creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/installation_informer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/table_subsetter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/metadata_exporter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/table_validator.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/table_normalizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/uc_processor.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/metadata_adder.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/table_converter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/table_summarizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/table_head.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/cli/table_ids.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_filter.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_subsample.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_transform.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/assets copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/assets/exercise_api.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/assets copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/assets/exercise_cli.sh -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/assets copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_filter.cpython-39.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom copying build/lib.dragonfly-6.5-x86_64-cpython-39/biom/_subsample.cpython-39.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/exception.py to exception.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/util.py to util.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/table.py to table.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/parse.py to parse.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/err.py to err.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/long_lines.py to long_lines.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_parse.py to test_parse.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_table.py to test_table.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_util.py to test_util.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_err.py to test_err.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_data/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/installation_informer.py to installation_informer.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/util.py to util.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/__init__.py to __init__.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/table_validator.py to table_validator.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/uc_processor.py to uc_processor.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/table_converter.py to table_converter.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/table_head.py to table_head.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/cli/table_ids.py to table_ids.cpython-39.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/assets/exercise_api.py to exercise_api.cpython-39.pyc writing byte-compilation script '/tmp/tmpfa4ovo39.py' /usr/local/bin/python3.9 /tmp/tmpfa4ovo39.py removing /tmp/tmpfa4ovo39.py running install_egg_info Copying biom_format.egg-info to /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom_format-2.1.10-py3.9.egg-info running install_scripts Installing biom script to /construction/biology/py-biom-format/stage/usr/local/bin writing list of installed files to '/construction/biology/py-biom-format/.PLIST.pymodtmp' /usr/bin/strip /construction/biology/py-biom-format/stage/usr/local/lib/python3.9/site-packages/biom/*.so ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/biom --> bin/biom-3.9 Link: @bin/biom --> bin/biom-3.9 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py39-biom-format-2.1.10_1 file sizes/checksums [230]: 0% file sizes/checksums [230]: 43% file sizes/checksums [230]: 86% file sizes/checksums [230]: 100% Service unavailablepacking files [230]: 0% packing files [230]: 43% packing files [230]: 86% packing files [230]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:04 TOTAL TIME 00:00:46