------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_3,1.txz ===== Message from binutils-2.33.1_3,1: -- ===> NOTICE: The binutils port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.10,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.2.20201017.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1h_1,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/py37-cython-0.29.21.txz Installing /packages/All/py37-click-7.1.2.txz Installing /packages/All/py37-future-0.18.2.txz Installing /packages/All/py37-scipy-1.2.2_1.txz Installing /packages/All/py37-six-1.15.0.txz Installing /packages/All/py37-dateutil-2.8.1.txz Installing /packages/All/py37-pytz-2020.1,1.txz Installing /packages/All/libedit-3.1.20191231,1.txz Installing /packages/All/sqlite3-3.33.0,1.txz Installing /packages/All/py37-sqlite3-3.7.9_7.txz Installing /packages/All/py37-bottleneck-1.3.2.txz Installing /packages/All/py37-numexpr-2.7.1.txz Installing /packages/All/py37-pandas-0.24.2_1,1.txz ===== Message from py37-pandas-0.24.2_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. Installing /packages/All/hdf-szip-2.1.1.txz Installing /packages/All/hdf5-1.10.6,1.txz Installing /packages/All/py37-h5py-2.10.0.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:32 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-biom-format-2.1.8 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-biom-format-2.1.8 depends on file: /usr/local/sbin/pkg - found => biom-format-2.1.8-1.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/b/biom-format/biom-format-2.1.8-1.tar.gz biom-format-2.1.8-1.tar.gz 0% of 11 MB 0 Bps biom-format-2.1.8-1.tar.gz 11 MB 42 MBps 00s ===> Fetching all distfiles required by py37-biom-format-2.1.8 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-biom-format-2.1.8 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-biom-format-2.1.8 for building => SHA256 Checksum OK for biom-format-2.1.8-1.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-biom-format-2.1.8 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-biom-format-2.1.8 for building ===> Extracting for py37-biom-format-2.1.8 => SHA256 Checksum OK for biom-format-2.1.8-1.tar.gz. /bin/rm -f -r /construction/biology/py-biom-format/biom-format-2.1.8/tests Extracted Memory Use: 50.30M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-biom-format-2.1.8 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-biom-format-2.1.8 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-biom-format-2.1.8 depends on executable: cython-3.7 - found ===> py37-biom-format-2.1.8 depends on package: py37-setuptools>0 - found ===> py37-biom-format-2.1.8 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-biom-format-2.1.8 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-biom-format-2.1.8 depends on executable: cython-3.7 - found ===> py37-biom-format-2.1.8 depends on package: py37-setuptools>0 - found ===> py37-biom-format-2.1.8 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-biom-format-2.1.8 Compiling biom/_filter.pyx because it changed. Compiling biom/_transform.pyx because it changed. Compiling biom/_subsample.pyx because it changed. [1/3] Cythonizing biom/_filter.pyx /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-biom-format/biom-format-2.1.8/biom/_filter.pyx tree = Parsing.p_module(s, pxd, full_module_name) [2/3] Cythonizing biom/_subsample.pyx /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-biom-format/biom-format-2.1.8/biom/_subsample.pyx tree = Parsing.p_module(s, pxd, full_module_name) [3/3] Cythonizing biom/_transform.pyx /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/biology/py-biom-format/biom-format-2.1.8/biom/_transform.pyx tree = Parsing.p_module(s, pxd, full_module_name) running config SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-biom-format-2.1.8 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/table.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/parse.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/err.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/util.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/exception.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom creating build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/metadata_adder.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/table_validator.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/table_ids.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/uc_processor.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/table_head.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/table_normalizer.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/table_summarizer.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/table_converter.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/metadata_exporter.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/util.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/table_subsetter.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli copying biom/cli/installation_informer.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/cli creating build/lib.dragonfly-5.9-x86_64-3.7/biom/tests copying biom/tests/test_err.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests copying biom/tests/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests copying biom/tests/test_util.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests copying biom/tests/test_table.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests copying biom/tests/test_parse.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests copying biom/tests/long_lines.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests creating build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli creating build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data copying biom/tests/test_data/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' copying biom/_filter.pyx -> build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/_subsample.pyx -> build/lib.dragonfly-5.9-x86_64-3.7/biom copying biom/_transform.pyx -> build/lib.dragonfly-5.9-x86_64-3.7/biom creating build/lib.dragonfly-5.9-x86_64-3.7/biom/assets copying biom/assets/exercise_api.py -> build/lib.dragonfly-5.9-x86_64-3.7/biom/assets copying biom/assets/exercise_cli.sh -> build/lib.dragonfly-5.9-x86_64-3.7/biom/assets creating build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables creating build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data copying biom/tests/test_data/bad_table.txt -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data copying biom/tests/test_data/empty.biom -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data copying biom/tests/test_data/test.biom -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data copying biom/tests/test_data/test.json -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data running build_ext building 'biom._filter' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/biom cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c biom/_filter.c -o build/temp.dragonfly-5.9-x86_64-3.7/biom/_filter.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_filter.c:629: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/biom/_filter.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/biom/_filter.so building 'biom._transform' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c biom/_transform.c -o build/temp.dragonfly-5.9-x86_64-3.7/biom/_transform.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_transform.c:629: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/biom/_transform.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/biom/_transform.so building 'biom._subsample' extension cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c biom/_subsample.c -o build/temp.dragonfly-5.9-x86_64-3.7/biom/_subsample.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_subsample.c:629: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/biom/_subsample.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/biom/_subsample.so SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-biom-format-2.1.8 depends on package: py37-click>0 - found ===> py37-biom-format-2.1.8 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-biom-format-2.1.8 depends on package: py37-future>=0.16.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-scipy>=1 - found ===> py37-biom-format-2.1.8 depends on package: py37-pandas>=0.20.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-h5py>=2.2.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-six>=1.10.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-setuptools>0 - found ===> py37-biom-format-2.1.8 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-biom-format-2.1.8 ===> py37-biom-format-2.1.8 depends on package: py37-click>0 - found ===> py37-biom-format-2.1.8 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-biom-format-2.1.8 depends on package: py37-future>=0.16.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-scipy>=1 - found ===> py37-biom-format-2.1.8 depends on package: py37-pandas>=0.20.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-h5py>=2.2.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-six>=1.10.0 - found ===> py37-biom-format-2.1.8 depends on package: py37-setuptools>0 - found ===> py37-biom-format-2.1.8 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running egg_info writing biom_format.egg-info/PKG-INFO writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt writing requirements to biom_format.egg-info/requires.txt writing top-level names to biom_format.egg-info/top_level.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' running build_ext running install_lib creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7 creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/_subsample.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/_transform.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/exception.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_uc_processor.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_subset_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_table_normalizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_validate_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_summarize_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_show_install_info.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data/test.json -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data/test.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_add_metadata.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/test_table_converter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_cli/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/bench_tables creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/empty.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/test.json.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/bad_table.txt.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/bad_table.txt -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/test.json -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/test.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_data/no-contents.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_err.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_parse.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/test_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/long_lines.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-3.7/biom/tests/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/assets copying build/lib.dragonfly-5.9-x86_64-3.7/biom/assets/exercise_cli.sh -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/assets copying build/lib.dragonfly-5.9-x86_64-3.7/biom/assets/exercise_api.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/assets copying build/lib.dragonfly-5.9-x86_64-3.7/biom/_subsample.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/metadata_exporter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/table_subsetter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/table_converter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/installation_informer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/table_normalizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/table_validator.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/metadata_adder.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/table_head.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/table_summarizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/uc_processor.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/cli/table_ids.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-3.7/biom/parse.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/_transform.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/_filter.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/err.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-3.7/biom/_filter.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/exception.py to exception.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/util.py to util.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/table.py to table.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_cli/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_util.py to test_util.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_data/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_err.py to test_err.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_parse.py to test_parse.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/test_table.py to test_table.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/long_lines.py to long_lines.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/tests/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/assets/exercise_api.py to exercise_api.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/metadata_exporter.py to metadata_exporter.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/table_subsetter.py to table_subsetter.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/table_converter.py to table_converter.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/installation_informer.py to installation_informer.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/table_normalizer.py to table_normalizer.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/table_validator.py to table_validator.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/metadata_adder.py to metadata_adder.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/table_head.py to table_head.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/table_summarizer.py to table_summarizer.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/util.py to util.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/uc_processor.py to uc_processor.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/cli/table_ids.py to table_ids.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/parse.py to parse.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/err.py to err.cpython-37.pyc writing byte-compilation script '/tmp/tmpkd9l9cik.py' /usr/local/bin/python3.7 /tmp/tmpkd9l9cik.py removing /tmp/tmpkd9l9cik.py running install_egg_info Copying biom_format.egg-info to /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom_format-2.1.8-py3.7.egg-info running install_scripts Installing biom script to /construction/biology/py-biom-format/stage/usr/local/bin writing list of installed files to '/construction/biology/py-biom-format/.PLIST.pymodtmp' /usr/bin/strip /construction/biology/py-biom-format/stage/usr/local/lib/python3.7/site-packages/biom/*.so ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/biom --> bin/biom-3.7 Link: @bin/biom --> bin/biom-3.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/biom/_filter.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-biom-format-2.1.8 file sizes/checksums [230]: 0% file sizes/checksums [230]: 43% file sizes/checksums [230]: 86% file sizes/checksums [230]: 100% packing files [230]: 0% packing files [230]: 43% packing files [230]: 86% packing files [230]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:12 TOTAL TIME 00:01:00