------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/construction/biology/megahit XDG_CONFIG_HOME=/construction/biology/megahit XDG_CACHE_HOME=/construction/biology/megahit/.cache HOME=/construction/biology/megahit TMPDIR="/tmp" PATH=/construction/biology/megahit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/megahit/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/megahit XDG_CONFIG_HOME=/construction/biology/megahit XDG_CACHE_HOME=/construction/biology/megahit/.cache HOME=/construction/biology/megahit TMPDIR="/tmp" PATH=/construction/biology/megahit/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/megahit/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -pthread -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -pthread -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/megahit/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/megahit" EXAMPLESDIR="share/examples/megahit" DATADIR="share/megahit" WWWDIR="www/megahit" ETCDIR="etc/megahit" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PYTHON_INCLUDEDIR=/usr/local/include/python3.9 PYTHON_LIBDIR=/usr/local/lib/python3.9 PYTHON_PLATFORM=dragonfly6 PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/megahit DOCSDIR=/usr/local/share/doc/megahit EXAMPLESDIR=/usr/local/share/examples/megahit WWWDIR=/usr/local/www/megahit ETCDIR=/usr/local/etc/megahit SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.46.0.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.2.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.5.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.4: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.26.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. SUCCEEDED 00:00:12 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by megahit-1.2.9_1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by megahit-1.2.9_1 for building => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> megahit-1.2.9_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by megahit-1.2.9_1 for building ===> Extracting for megahit-1.2.9_1 => SHA256 Checksum OK for voutcn-megahit-v1.2.9_GH0.tar.gz. Extracted Memory Use: 1.47M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for megahit-1.2.9_1 ===> Applying ports patches for megahit-1.2.9_1 from /xports/biology/megahit/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - found ===> megahit-1.2.9_1 depends on file: /usr/local/bin/python3.9 - found ===> megahit-1.2.9_1 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> megahit-1.2.9_1 depends on file: /usr/local/bin/cmake - found ===> megahit-1.2.9_1 depends on file: /usr/local/bin/python3.9 - found ===> megahit-1.2.9_1 depends on file: /usr/local/bin/ccache - found ===> Configuring for megahit-1.2.9_1 ===> Performing out-of-source build /bin/mkdir -p /construction/biology/megahit/.build CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/local/libexec/ccache/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Build type: Release: -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -- Configuring done (4.1s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS CMAKE_SHARED_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED Python_ADDITIONAL_VERSIONS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/biology/megahit/.build SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for megahit-1.2.9_1 /usr/local/bin/cmake -S/construction/biology/megahit/megahit-1.2.9 -B/construction/biology/megahit/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/megahit/.build/CMakeFiles /construction/biology/megahit/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_toolkit.dir/all --- --- CMakeFiles/megahit_core.dir/all --- /usr/bin/make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/depend --- CMakeFiles/megahit_core_popcnt.dir/all --- /usr/bin/make -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/depend --- CMakeFiles/megahit_core_popcnt.dir/depend --- cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_core_popcnt.dir/DependInfo.cmake --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- /usr/bin/make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/depend --- CMakeFiles/megahit_toolkit.dir/all --- /usr/bin/make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/depend --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/depend --- cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_core.dir/DependInfo.cmake --- CMakeFiles/megahit_toolkit.dir/all --- --- CMakeFiles/megahit_toolkit.dir/depend --- cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_toolkit.dir/DependInfo.cmake --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/depend --- cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_core_no_hw_accel.dir/DependInfo.cmake --- CMakeFiles/megahit_core.dir/all --- /usr/bin/make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/build --- CMakeFiles/megahit_core_popcnt.dir/all --- /usr/bin/make -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/build --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/main.cpp.o --- --- CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o --- --- CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o --- --- CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o --- --- CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o --- --- CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o --- --- CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o --- --- CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o --- --- CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o --- --- CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o --- --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o --- --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/main.cpp.o --- [ 2%] Building CXX object CMakeFiles/megahit_core.dir/src/main.cpp.o --- CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o --- [ 2%] Building CXX object CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o --- CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o --- [ 2%] Building CXX object CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o --- CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o --- [ 3%] Building CXX object CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o --- CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o --- [ 4%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o --- CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_assemble.cpp --- CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_iterate.cpp --- CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_local_assemble.cpp --- CMakeFiles/megahit_core.dir/src/main.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main.cpp.o -MF CMakeFiles/megahit_core.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main.cpp --- CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o --- [ 6%] Building CXX object CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o --- CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o --- [ 6%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o --- CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/low_depth_remover.cpp --- CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/utils/options_description.cpp --- CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/contig_output.cpp --- CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o --- [ 8%] Building CXX object CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o --- CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o --- [ 7%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o --- CMakeFiles/megahit_core_popcnt.dir/all --- [ 9%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_buildlib.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o --- /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/bubble_remover.cpp --- CMakeFiles/megahit_toolkit.dir/all --- /usr/bin/make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/build --- CMakeFiles/megahit_toolkit --- /usr/local/bin/cmake -E create_symlink megahit_core_no_hw_accel megahit_toolkit --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o --- [ 10%] Building CXX object CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_sdbg_build.cpp --- CMakeFiles/megahit_toolkit.dir/all --- [ 10%] Built target megahit_toolkit --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o --- --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- /usr/bin/make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/build --- CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o --- --- CMakeFiles/megahit_core_popcnt.dir/all --- [ 11%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_assemble.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- [ 12%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o --- [ 13%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_assemble.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o --- [ 13%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/sdbg_pruning.cpp --- CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o --- [ 14%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/tip_remover.cpp --- CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o --- [ 15%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/unitig_graph.cpp --- CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o --- [ 16%] Building CXX object CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/weak_link_remover.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o --- [ 17%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_buildlib.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o --- [ 18%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/contig_graph.cpp --- CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o --- [ 19%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp --- CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o --- [ 20%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/hash_graph.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o --- [ 21%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_iterate.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o --- [ 22%] Building CXX object CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/sequence.cpp --- CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o --- [ 23%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_meta.cpp --- CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o --- [ 24%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp --- CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o --- [ 24%] Building CXX object CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_writer.cpp --- CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o --- [ 25%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/localasm/hash_mapper.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o --- [ 26%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_local_assemble.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o --- [ 27%] Building CXX object CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/localasm/local_assemble.cpp --- CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o --- [ 28%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/fastx_reader.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o --- [ 29%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_sdbg_build.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o --- [ 30%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o --- [ 31%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_buildlib.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o --- [ 31%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_iterate.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o --- --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- In file included from /construction/biology/megahit/megahit-1.2.9/src/definitions.h:48, from /construction/biology/megahit/megahit-1.2.9/src/main_iterate.cpp:35: /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZN16ContigFlankIndexI4KmerILj1EmEE16FeedBatchContigsER15SequencePackageIjERKSt6vectorIfSaIfEE._omp_fn.63': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj2EmEE22FindNextKmersFromReadsI13KmerCollectorIS0_ILj1EmEEEEmRK15SequencePackageIjEPT_._omp_fn.46': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj3EjEE22FindNextKmersFromReadsI13KmerCollectorIS0_ILj1EmEEEEmRK15SequencePackageIjEPT_._omp_fn.55': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj1EmEE22FindNextKmersFromReadsI13KmerCollectorIS1_EEEmRK15SequencePackageIjEPT_._omp_fn.64': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ --- CMakeFiles/megahit_core.dir/all --- [ 32%] Building CXX object CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/sequence_lib.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o --- [ 33%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_local_assemble.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o --- [ 34%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/main_sdbg_build.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o --- [ 35%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/utils/options_description.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o --- [ 36%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/bubble_remover.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o --- [ 37%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/base_engine.cpp --- CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o --- [ 38%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/kmer_counter.cpp --- CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o --- [ 39%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/kmsort_selector.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o --- [ 40%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/contig_output.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o --- [ 41%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/low_depth_remover.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o --- [ 42%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/sdbg_pruning.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o --- [ 43%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp --- CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o --- [ 43%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp --- CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o --- [ 44%] Building CXX object CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp --- CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o --- [ 45%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/contigs_to_fastg.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o --- [ 45%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/utils/options_description.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o --- [ 46%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/filter_by_len.cpp --- CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o --- [ 47%] Building CXX object CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mbmi2 -DUSE_BMI2 -mpopcnt -MD -MT CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/read_stat.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o --- [ 48%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/tip_remover.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o --- [ 49%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/bubble_remover.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o --- [ 50%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/contig_output.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o --- [ 51%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/unitig_graph.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o --- [ 52%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/low_depth_remover.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o --- [ 52%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/weak_link_remover.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o --- [ 53%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/sdbg_pruning.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o --- [ 54%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/contig_graph.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o --- [ 55%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o --- [ 56%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/hash_graph.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o --- [ 57%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/sequence.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o --- [ 58%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_meta.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o --- [ 59%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o --- [ 60%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_writer.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o --- [ 61%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/localasm/hash_mapper.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o --- [ 62%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/localasm/local_assemble.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o --- [ 62%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/fastx_reader.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o --- [ 63%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o --- [ 64%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/sequence_lib.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o --- --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o --- --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- [ 65%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/base_engine.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- [ 66%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/tip_remover.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o --- [ 67%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/kmer_counter.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o --- [ 68%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/kmsort_selector.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o --- [ 69%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o --- [ 70%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o --- [ 71%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o --- [ 72%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/contigs_to_fastg.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o --- [ 72%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/filter_by_len.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o --- [ 73%] Building CXX object CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/read_stat.cpp --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o --- [ 74%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/unitig_graph.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o --- [ 75%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/assembly/weak_link_remover.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o --- [ 76%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/contig_graph.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o --- [ 77%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/contig_graph_branch_group.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o --- [ 77%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/hash_graph.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o --- [ 78%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/idba/sequence.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o --- [ 79%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_meta.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o --- [ 80%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_raw_content.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o --- [ 81%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sdbg/sdbg_writer.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o --- [ 82%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/localasm/hash_mapper.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o --- [ 83%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/localasm/local_assemble.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o --- [ 84%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/fastx_reader.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o --- [ 85%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/paired_fastx_reader.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o --- [ 86%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sequence/io/sequence_lib.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o --- [ 86%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/base_engine.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o --- [ 87%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/kmer_counter.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o --- [ 88%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/kmsort_selector.cpp --- CMakeFiles/megahit_core_no_hw_accel.dir/all --- --- megahit_core_no_hw_accel --- [ 89%] Linking CXX executable megahit_core_no_hw_accel /usr/local/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_no_hw_accel.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -o megahit_core_no_hw_accel -lz [ 90%] Built target megahit_core_no_hw_accel --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o --- [ 91%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/read_to_sdbg_s1.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o --- [ 92%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/read_to_sdbg_s2.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o --- [ 93%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/sorting/seq_to_sdbg.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o --- [ 94%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/contigs_to_fastg.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o --- [ 95%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/filter_by_len.cpp --- CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o --- [ 96%] Building CXX object CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o /usr/local/libexec/ccache/c++ -I/construction/biology/megahit/megahit-1.2.9/src -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG -std=gnu++11 -mpopcnt -MD -MT CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -MF CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o.d -o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -c /construction/biology/megahit/megahit-1.2.9/src/tools/read_stat.cpp --- CMakeFiles/megahit_core.dir/all --- --- CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o --- In file included from /construction/biology/megahit/megahit-1.2.9/src/definitions.h:48, from /construction/biology/megahit/megahit-1.2.9/src/main_iterate.cpp:35: /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZN16ContigFlankIndexI4KmerILj1EmEE16FeedBatchContigsER15SequencePackageIjERKSt6vectorIfSaIfEE._omp_fn.63': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj2EmEE22FindNextKmersFromReadsI13KmerCollectorIS0_ILj1EmEEEEmRK15SequencePackageIjEPT_._omp_fn.46': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj3EjEE22FindNextKmersFromReadsI13KmerCollectorIS0_ILj1EmEEEEmRK15SequencePackageIjEPT_._omp_fn.55': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj1EmEE22FindNextKmersFromReadsI13KmerCollectorIS1_EEEmRK15SequencePackageIjEPT_._omp_fn.64': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ --- CMakeFiles/megahit_core_popcnt.dir/all --- --- CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o --- In file included from /construction/biology/megahit/megahit-1.2.9/src/definitions.h:48, from /construction/biology/megahit/megahit-1.2.9/src/main_iterate.cpp:35: /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZN16ContigFlankIndexI4KmerILj1EmEE16FeedBatchContigsER15SequencePackageIjERKSt6vectorIfSaIfEE._omp_fn.63': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj2EmEE22FindNextKmersFromReadsI13KmerCollectorIS0_ILj1EmEEEEmRK15SequencePackageIjEPT_._omp_fn.46': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj3EjEE22FindNextKmersFromReadsI13KmerCollectorIS0_ILj1EmEEEEmRK15SequencePackageIjEPT_._omp_fn.55': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h: In function '_ZNK16ContigFlankIndexI4KmerILj1EmEE22FindNextKmersFromReadsI13KmerCollectorIS1_EEEmRK15SequencePackageIjEPT_._omp_fn.64': /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ /construction/biology/megahit/megahit-1.2.9/src/sequence/kmer.h:142:42: warning: array subscript 1 is above array bounds of 'Kmer<1, long unsigned int>::word_type [1]' {aka 'long unsigned int [1]'} [-Warray-bounds] data_[i] = (data_[i] << 2) | (data_[i + 1] >> (kBitsPerWord - 2)); ~~~~~^ --- megahit_core_popcnt --- [ 97%] Linking CXX executable megahit_core_popcnt /usr/local/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_popcnt.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -o megahit_core_popcnt -lz [ 98%] Built target megahit_core_popcnt --- CMakeFiles/megahit_core.dir/all --- --- megahit_core --- [ 99%] Linking CXX executable megahit_core /usr/local/bin/cmake -E cmake_link_script CMakeFiles/megahit_core.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG CMakeFiles/megahit_core.dir/src/main.cpp.o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -o megahit_core -lz [100%] Built target megahit_core --- CMakeFiles/megahit.dir/all --- /usr/bin/make -f CMakeFiles/megahit.dir/build.make CMakeFiles/megahit.dir/depend --- CMakeFiles/megahit.dir/depend --- cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/megahit.dir/build.make CMakeFiles/megahit.dir/build --- CMakeFiles/megahit --- cp /construction/biology/megahit/megahit-1.2.9/src/megahit . [100%] Built target megahit /usr/local/bin/cmake -E cmake_progress_start /construction/biology/megahit/.build/CMakeFiles 0 SUCCEEDED 00:03:45 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> megahit-1.2.9_1 depends on file: /usr/local/bin/python3.9 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for megahit-1.2.9_1 ===> megahit-1.2.9_1 depends on file: /usr/local/bin/python3.9 - found ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/biology/megahit/megahit-1.2.9 -B/construction/biology/megahit/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/megahit/.build/CMakeFiles /construction/biology/megahit/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/depend cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_core.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/build [ 33%] Built target megahit_core /usr/bin/make -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/depend cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_core_popcnt.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/build [ 67%] Built target megahit_core_popcnt /usr/bin/make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/depend cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_core_no_hw_accel.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/build [100%] Built target megahit_core_no_hw_accel /usr/bin/make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/depend cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit_toolkit.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/megahit_toolkit.dir/build.make CMakeFiles/megahit_toolkit.dir/build /usr/local/bin/cmake -E create_symlink megahit_core_no_hw_accel megahit_toolkit [100%] Built target megahit_toolkit /usr/bin/make -f CMakeFiles/megahit.dir/build.make CMakeFiles/megahit.dir/depend cd /construction/biology/megahit/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/megahit-1.2.9 /construction/biology/megahit/.build /construction/biology/megahit/.build /construction/biology/megahit/.build/CMakeFiles/megahit.dir/DependInfo.cmake /usr/bin/make -f CMakeFiles/megahit.dir/build.make CMakeFiles/megahit.dir/build cp /construction/biology/megahit/megahit-1.2.9/src/megahit . [100%] Built target megahit /usr/local/bin/cmake -E cmake_progress_start /construction/biology/megahit/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall /usr/bin/make -f CMakeFiles/megahit_core.dir/build.make CMakeFiles/megahit_core.dir/preinstall Linking CXX executable CMakeFiles/CMakeRelink.dir/megahit_core /usr/local/bin/cmake -E cmake_link_script CMakeFiles/megahit_core.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG CMakeFiles/megahit_core.dir/src/main.cpp.o CMakeFiles/megahit_core.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core.dir/src/tools/read_stat.cpp.o -o CMakeFiles/CMakeRelink.dir/megahit_core -lz /usr/bin/make -f CMakeFiles/megahit_core_popcnt.dir/build.make CMakeFiles/megahit_core_popcnt.dir/preinstall Linking CXX executable CMakeFiles/CMakeRelink.dir/megahit_core_popcnt /usr/local/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_popcnt.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG CMakeFiles/megahit_core_popcnt.dir/src/main.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_popcnt.dir/src/tools/read_stat.cpp.o -o CMakeFiles/CMakeRelink.dir/megahit_core_popcnt -lz /usr/bin/make -f CMakeFiles/megahit_core_no_hw_accel.dir/build.make CMakeFiles/megahit_core_no_hw_accel.dir/preinstall Linking CXX executable CMakeFiles/CMakeRelink.dir/megahit_core_no_hw_accel /usr/local/bin/cmake -E cmake_link_script CMakeFiles/megahit_core_no_hw_accel.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -pipe -pthread -O2 -fno-strict-aliasing -fopenmp -DXXH_INLINE_ALL -ftemplate-depth=3000 -Wall -Wno-unused-function -D__XROOT__='"/construction/biology/megahit/megahit-1.2.9/src"' -DNDEBUG CMakeFiles/megahit_core_no_hw_accel.dir/src/main.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_buildlib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_iterate.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/main_sdbg_build.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/utils/options_description.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/bubble_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/contig_output.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/low_depth_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/sdbg_pruning.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/tip_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/unitig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/assembly/weak_link_remover.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/contig_graph_branch_group.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/hash_graph.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/idba/sequence.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_meta.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_raw_content.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sdbg/sdbg_writer.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/hash_mapper.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/localasm/local_assemble.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/paired_fastx_reader.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sequence/io/sequence_lib.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/base_engine.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmer_counter.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/kmsort_selector.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s1.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/read_to_sdbg_s2.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/sorting/seq_to_sdbg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/contigs_to_fastg.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/filter_by_len.cpp.o CMakeFiles/megahit_core_no_hw_accel.dir/src/tools/read_stat.cpp.o -o CMakeFiles/CMakeRelink.dir/megahit_core_no_hw_accel -lz Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/biology/megahit/stage/usr/local/bin/megahit_core -- Installing: /construction/biology/megahit/stage/usr/local/bin/megahit_core_popcnt -- Installing: /construction/biology/megahit/stage/usr/local/bin/megahit_core_no_hw_accel -- Installing: /construction/biology/megahit/stage/usr/local/bin/megahit -- Installing: /construction/biology/megahit/stage/usr/local/bin/megahit_toolkit -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/empty.fa -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/generate_random_fasta.py -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/loop.fa -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/r1.il.fa.gz -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/r2.il.fa.bz2 -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/r3_1.fa -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/r3_2.fa -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/r4.fa -- Installing: /construction/biology/megahit/stage/usr/local/share/megahit/test_data/ref.fa ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for megahit-1.2.9_1 file sizes/checksums [14]: 0% file sizes/checksums [14]: 100% Service unavailablepacking files [14]: 0% packing files [14]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:04:08