------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/libnuml XDG_CONFIG_HOME=/construction/biology/libnuml XDG_CACHE_HOME=/construction/biology/libnuml/.cache HOME=/construction/biology/libnuml TMPDIR="/tmp" PATH=/construction/biology/libnuml/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/libnuml/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/libnuml XDG_CONFIG_HOME=/construction/biology/libnuml XDG_CACHE_HOME=/construction/biology/libnuml/.cache HOME=/construction/biology/libnuml TMPDIR="/tmp" PATH=/construction/biology/libnuml/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/libnuml/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/libnuml/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libnuml" EXAMPLESDIR="share/examples/libnuml" DATADIR="share/libnuml" WWWDIR="www/libnuml" ETCDIR="etc/libnuml" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libnuml DOCSDIR=/usr/local/share/doc/libnuml EXAMPLESDIR=/usr/local/share/examples/libnuml WWWDIR=/usr/local/www/libnuml ETCDIR=/usr/local/etc/libnuml SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.44.2.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.1_1.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.3: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.25.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/libsbml-5.19.0_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required SUCCEEDED 00:00:12 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> libnuml-1.1.6 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> libnuml-1.1.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libnuml-1.1.6 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> libnuml-1.1.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libnuml-1.1.6 for building => SHA256 Checksum OK for NuML-NuML-v1.1.6_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> libnuml-1.1.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libnuml-1.1.6 for building ===> Extracting for libnuml-1.1.6 => SHA256 Checksum OK for NuML-NuML-v1.1.6_GH0.tar.gz. Extracted Memory Use: 4.95M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for libnuml-1.1.6 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> libnuml-1.1.6 depends on file: /usr/local/bin/cmake - found ===> libnuml-1.1.6 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> libnuml-1.1.6 depends on shared library: libsbml.so - found (/usr/local/lib/libsbml.so) ===> libnuml-1.1.6 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> libnuml-1.1.6 depends on file: /usr/local/bin/cmake - found ===> libnuml-1.1.6 depends on file: /usr/local/bin/ccache - found ===> libnuml-1.1.6 depends on shared library: libsbml.so - found (/usr/local/lib/libsbml.so) ===> libnuml-1.1.6 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Configuring for libnuml-1.1.6 ===> Performing out-of-source build /bin/mkdir -p /construction/biology/libnuml/.build -- The CXX compiler identification is GNU 8.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LIBSBML: sbml-static (found version "5.19.0") -- Looking for include file check.h -- Looking for include file check.h - not found -- Looking for include file expat.h -- Looking for include file expat.h - not found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- ---------------------------------------------------------------------- libNUML version 1.1.6 ---------------------------------------------------------------------- More information and the latest version are available online at https://github.com/NuML/NuML Please report problems using the issue tracker at https://github.com/NuML/NuML/issues Configured on host host type = DragonFly host operating system = DragonFly 6.5 host CPU architecture = x86_64 General build flags: CC = cc CXX = /usr/local/libexec/ccache/c++ CPPFLAGS = -DLINUX -DPACKAGE_VERSION="1.1.6" -DPACKAGE_NAME="libnuml" CFLAGS = -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC CXXFLAGS = -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC LDFLAGS = SBML library configuration: SBML library = /usr/local/lib/libsbml-static.a;/usr/lib/libbz2.so;/usr/lib/libz.so;/usr/local/lib/libxml2.so SBML include = -I/usr/local/include Other libNUML configuration settings: Installation $prefix = /usr/local -- Value of $LD_LIBRARY_PATH = -- Using SWIG = SWIG_EXECUTABLE-NOTFOUND -- -- Using C++ namespace for libNUML (libnuml) = no -- ---------------------------------------------------------------------- -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/biology/libnuml/.build SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for libnuml-1.1.6 /usr/local/bin/cmake -S/construction/biology/libnuml/NuML-1.1.6/libnuml -B/construction/biology/libnuml/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libnuml/.build/CMakeFiles /construction/biology/libnuml/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- src/CMakeFiles/numl.dir/all --- --- src/CMakeFiles/numl-static.dir/all --- --- src/CMakeFiles/numl.dir/all --- /usr/bin/make -f src/CMakeFiles/numl.dir/build.make src/CMakeFiles/numl.dir/depend --- src/CMakeFiles/numl-static.dir/all --- /usr/bin/make -f src/CMakeFiles/numl-static.dir/build.make src/CMakeFiles/numl-static.dir/depend --- src/CMakeFiles/numl.dir/all --- --- src/CMakeFiles/numl.dir/depend --- cd /construction/biology/libnuml/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libnuml/NuML-1.1.6/libnuml /construction/biology/libnuml/NuML-1.1.6/libnuml/src /construction/biology/libnuml/.build /construction/biology/libnuml/.build/src /construction/biology/libnuml/.build/src/CMakeFiles/numl.dir/DependInfo.cmake --- src/CMakeFiles/numl-static.dir/all --- --- src/CMakeFiles/numl-static.dir/depend --- cd /construction/biology/libnuml/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libnuml/NuML-1.1.6/libnuml /construction/biology/libnuml/NuML-1.1.6/libnuml/src /construction/biology/libnuml/.build /construction/biology/libnuml/.build/src /construction/biology/libnuml/.build/src/CMakeFiles/numl-static.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/numl-static.dir/build.make src/CMakeFiles/numl-static.dir/build --- src/CMakeFiles/numl.dir/all --- /usr/bin/make -f src/CMakeFiles/numl.dir/build.make src/CMakeFiles/numl.dir/build --- src/CMakeFiles/numl-static.dir/all --- --- src/CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/AtomicDescription.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/Dimension.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/DimensionDescription.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/NMBase.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/NUMLConvert.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/NUMLError.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/NUMLErrorLog.cpp.o --- --- src/CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o --- [ 2%] Building CXX object src/CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o --- src/CMakeFiles/numl-static.dir/numl/Dimension.cpp.o --- [ 4%] Building CXX object src/CMakeFiles/numl-static.dir/numl/Dimension.cpp.o --- src/CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o -MF CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o.d -o CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/CompositeDescription.cpp --- src/CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o --- src/CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o --- src/CMakeFiles/numl-static.dir/numl/DimensionDescription.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/numl-static.dir/numl/DimensionDescription.cpp.o --- src/CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o --- src/CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o --- src/CMakeFiles/numl-static.dir/numl/Dimension.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/Dimension.cpp.o -MF CMakeFiles/numl-static.dir/numl/Dimension.cpp.o.d -o CMakeFiles/numl-static.dir/numl/Dimension.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/Dimension.cpp --- src/CMakeFiles/numl-static.dir/numl/NUMLError.cpp.o --- [ 17%] Building CXX object src/CMakeFiles/numl-static.dir/numl/NUMLError.cpp.o --- src/CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o -MF CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o.d -o CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLDocument.cpp --- src/CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o -MF CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o.d -o CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/common/libnuml-version.cpp --- src/CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o -MF CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o.d -o CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/AtomicValue.cpp --- src/CMakeFiles/numl-static.dir/numl/NMBase.cpp.o --- [ 19%] Building CXX object src/CMakeFiles/numl-static.dir/numl/NMBase.cpp.o --- src/CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o -MF CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o.d -o CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/CompositeValue.cpp --- src/CMakeFiles/numl-static.dir/numl/DimensionDescription.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/DimensionDescription.cpp.o -MF 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-DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/AtomicValue.cpp.o -MF CMakeFiles/numl.dir/numl/AtomicValue.cpp.o.d -o CMakeFiles/numl.dir/numl/AtomicValue.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/AtomicValue.cpp --- src/CMakeFiles/numl-static.dir/all --- --- src/CMakeFiles/numl-static.dir/numl/TupleDescription.cpp.o --- [ 51%] Building CXX object src/CMakeFiles/numl-static.dir/numl/TupleDescription.cpp.o --- src/CMakeFiles/numl.dir/all --- --- src/CMakeFiles/numl.dir/numl/CompositeValue.cpp.o --- --- src/CMakeFiles/numl-static.dir/all --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -MD -MT src/CMakeFiles/numl-static.dir/numl/TupleDescription.cpp.o -MF CMakeFiles/numl-static.dir/numl/TupleDescription.cpp.o.d -o CMakeFiles/numl-static.dir/numl/TupleDescription.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/TupleDescription.cpp --- src/CMakeFiles/numl.dir/all --- --- src/CMakeFiles/numl.dir/numl/CompositeDescription.cpp.o --- [ 53%] Building CXX object src/CMakeFiles/numl.dir/numl/CompositeDescription.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/CompositeDescription.cpp.o -MF CMakeFiles/numl.dir/numl/CompositeDescription.cpp.o.d -o CMakeFiles/numl.dir/numl/CompositeDescription.cpp.o -c 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src/CMakeFiles/numl.dir/numl/CompositeValue.cpp.o -MF CMakeFiles/numl.dir/numl/CompositeValue.cpp.o.d -o CMakeFiles/numl.dir/numl/CompositeValue.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/CompositeValue.cpp --- src/CMakeFiles/numl.dir/numl/Dimension.cpp.o --- [ 59%] Building CXX object src/CMakeFiles/numl.dir/numl/Dimension.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/Dimension.cpp.o -MF CMakeFiles/numl.dir/numl/Dimension.cpp.o.d -o CMakeFiles/numl.dir/numl/Dimension.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/Dimension.cpp --- src/CMakeFiles/numl.dir/numl/DimensionDescription.cpp.o --- [ 61%] Building CXX object src/CMakeFiles/numl.dir/numl/DimensionDescription.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/DimensionDescription.cpp.o -MF CMakeFiles/numl.dir/numl/DimensionDescription.cpp.o.d -o CMakeFiles/numl.dir/numl/DimensionDescription.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/DimensionDescription.cpp --- src/CMakeFiles/numl.dir/numl/NMBase.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NUMLConvert.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NUMLDocument.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NMBase.cpp.o --- [ 63%] Building CXX object src/CMakeFiles/numl.dir/numl/NMBase.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src 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-I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/NUMLDocument.cpp.o -MF CMakeFiles/numl.dir/numl/NUMLDocument.cpp.o.d -o CMakeFiles/numl.dir/numl/NUMLDocument.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLDocument.cpp --- src/CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o --- [ 72%] Building CXX object src/CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o --- src/CMakeFiles/numl.dir/numl/NUMLList.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o -MF CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o.d -o CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLErrorLog.cpp --- src/CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NUMLList.cpp.o --- [ 74%] Building CXX object src/CMakeFiles/numl.dir/numl/NUMLList.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/NUMLList.cpp.o -MF CMakeFiles/numl.dir/numl/NUMLList.cpp.o.d -o CMakeFiles/numl.dir/numl/NUMLList.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLList.cpp --- src/CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o --- [ 76%] Building CXX object src/CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o -MF CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o.d -o CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLNamespaces.cpp --- src/CMakeFiles/numl.dir/numl/NUMLReader.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NUMLTypeCodes.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o --- --- src/CMakeFiles/numl.dir/numl/NUMLTypeCodes.cpp.o --- [ 78%] Building CXX object src/CMakeFiles/numl.dir/numl/NUMLTypeCodes.cpp.o --- src/CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o --- --- src/CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o --- --- 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--- src/CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o --- [ 80%] Building CXX object src/CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o -MF CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o.d -o CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLVisitor.cpp --- src/CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o --- [ 82%] Building CXX object src/CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o --- src/CMakeFiles/numl.dir/numl/TupleDescription.cpp.o --- --- src/CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o -MF CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o.d -o CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/OntologyTerm.cpp --- src/CMakeFiles/numl.dir/numl/Tuple.cpp.o --- [ 85%] Building CXX object src/CMakeFiles/numl.dir/numl/Tuple.cpp.o --- src/CMakeFiles/numl.dir/numl/ResultComponent.cpp.o --- [ 87%] Building CXX object src/CMakeFiles/numl.dir/numl/ResultComponent.cpp.o --- src/CMakeFiles/numl.dir/numl/Tuple.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/Tuple.cpp.o -MF CMakeFiles/numl.dir/numl/Tuple.cpp.o.d -o CMakeFiles/numl.dir/numl/Tuple.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/Tuple.cpp --- src/CMakeFiles/numl.dir/numl/ResultComponent.cpp.o --- cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/ResultComponent.cpp.o -MF CMakeFiles/numl.dir/numl/ResultComponent.cpp.o.d -o CMakeFiles/numl.dir/numl/ResultComponent.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/ResultComponent.cpp --- src/CMakeFiles/numl.dir/numl/NUMLReader.cpp.o --- [ 89%] Building CXX object src/CMakeFiles/numl.dir/numl/NUMLReader.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/NUMLReader.cpp.o -MF CMakeFiles/numl.dir/numl/NUMLReader.cpp.o.d -o CMakeFiles/numl.dir/numl/NUMLReader.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLReader.cpp --- src/CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o --- [ 91%] Building CXX object src/CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o -MF CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o.d -o CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/NUMLWriter.cpp --- src/CMakeFiles/numl.dir/numl/TupleDescription.cpp.o --- [ 93%] Building CXX object src/CMakeFiles/numl.dir/numl/TupleDescription.cpp.o cd /construction/biology/libnuml/.build/src && /usr/local/libexec/ccache/c++ -DLIBNUML_EXPORTS=1 -DLINUX -DPACKAGE_NAME=\"libnuml\" -DPACKAGE_VERSION=\"1.1.6\" -Dnuml_EXPORTS -I/construction/biology/libnuml/.build/src/numl -I/construction/biology/libnuml/.build/src -I/construction/biology/libnuml/.build -I/construction/biology/libnuml/NuML-1.1.6/libnuml -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src -I/construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl -isystem /usr/local/include -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -fPIC -MD -MT src/CMakeFiles/numl.dir/numl/TupleDescription.cpp.o -MF CMakeFiles/numl.dir/numl/TupleDescription.cpp.o.d -o CMakeFiles/numl.dir/numl/TupleDescription.cpp.o -c /construction/biology/libnuml/NuML-1.1.6/libnuml/src/numl/TupleDescription.cpp --- src/CMakeFiles/numl-static.dir/all --- --- src/libnuml-static.a --- [ 95%] Linking CXX static library libnuml-static.a cd /construction/biology/libnuml/.build/src && /usr/local/bin/cmake -P CMakeFiles/numl-static.dir/cmake_clean_target.cmake cd /construction/biology/libnuml/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/numl-static.dir/link.txt --verbose=1 /usr/bin/ar qc libnuml-static.a "CMakeFiles/numl-static.dir/numl/common/libnuml-version.cpp.o" "CMakeFiles/numl-static.dir/numl/AtomicDescription.cpp.o" "CMakeFiles/numl-static.dir/numl/AtomicValue.cpp.o" "CMakeFiles/numl-static.dir/numl/CompositeDescription.cpp.o" "CMakeFiles/numl-static.dir/numl/CompositeValue.cpp.o" "CMakeFiles/numl-static.dir/numl/Dimension.cpp.o" "CMakeFiles/numl-static.dir/numl/DimensionDescription.cpp.o" "CMakeFiles/numl-static.dir/numl/NMBase.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLConvert.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLDocument.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLError.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLErrorLog.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLList.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLNamespaces.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLReader.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLTypeCodes.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLVisitor.cpp.o" "CMakeFiles/numl-static.dir/numl/NUMLWriter.cpp.o" "CMakeFiles/numl-static.dir/numl/OntologyTerm.cpp.o" "CMakeFiles/numl-static.dir/numl/ResultComponent.cpp.o" "CMakeFiles/numl-static.dir/numl/Tuple.cpp.o" "CMakeFiles/numl-static.dir/numl/TupleDescription.cpp.o" /usr/bin/ranlib libnuml-static.a [ 95%] Built target numl-static --- src/CMakeFiles/numl.dir/all --- --- src/libnuml.so.1.1.6 --- [ 97%] Linking CXX shared library libnuml.so cd /construction/biology/libnuml/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/numl.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libnuml.so.1 -o libnuml.so.1.1.6 "CMakeFiles/numl.dir/numl/common/libnuml-version.cpp.o" CMakeFiles/numl.dir/numl/AtomicDescription.cpp.o CMakeFiles/numl.dir/numl/AtomicValue.cpp.o CMakeFiles/numl.dir/numl/CompositeDescription.cpp.o CMakeFiles/numl.dir/numl/CompositeValue.cpp.o CMakeFiles/numl.dir/numl/Dimension.cpp.o CMakeFiles/numl.dir/numl/DimensionDescription.cpp.o CMakeFiles/numl.dir/numl/NMBase.cpp.o CMakeFiles/numl.dir/numl/NUMLConvert.cpp.o CMakeFiles/numl.dir/numl/NUMLDocument.cpp.o CMakeFiles/numl.dir/numl/NUMLError.cpp.o CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o CMakeFiles/numl.dir/numl/NUMLList.cpp.o CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o CMakeFiles/numl.dir/numl/NUMLReader.cpp.o CMakeFiles/numl.dir/numl/NUMLTypeCodes.cpp.o CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o CMakeFiles/numl.dir/numl/ResultComponent.cpp.o CMakeFiles/numl.dir/numl/Tuple.cpp.o CMakeFiles/numl.dir/numl/TupleDescription.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib /usr/local/lib/libsbml-static.a /usr/lib/libbz2.so /usr/lib/libz.so /usr/local/lib/libxml2.so cd /construction/biology/libnuml/.build/src && /usr/local/bin/cmake -E cmake_symlink_library libnuml.so.1.1.6 libnuml.so.1 libnuml.so [100%] Built target numl /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libnuml/.build/CMakeFiles 0 SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for libnuml-1.1.6 ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/biology/libnuml/NuML-1.1.6/libnuml -B/construction/biology/libnuml/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libnuml/.build/CMakeFiles /construction/biology/libnuml/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/numl.dir/build.make src/CMakeFiles/numl.dir/depend cd /construction/biology/libnuml/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libnuml/NuML-1.1.6/libnuml /construction/biology/libnuml/NuML-1.1.6/libnuml/src /construction/biology/libnuml/.build /construction/biology/libnuml/.build/src /construction/biology/libnuml/.build/src/CMakeFiles/numl.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/numl.dir/build.make src/CMakeFiles/numl.dir/build [ 51%] Built target numl /usr/bin/make -f src/CMakeFiles/numl-static.dir/build.make src/CMakeFiles/numl-static.dir/depend cd /construction/biology/libnuml/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libnuml/NuML-1.1.6/libnuml /construction/biology/libnuml/NuML-1.1.6/libnuml/src /construction/biology/libnuml/.build /construction/biology/libnuml/.build/src /construction/biology/libnuml/.build/src/CMakeFiles/numl-static.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/numl-static.dir/build.make src/CMakeFiles/numl-static.dir/build [100%] Built target numl-static /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libnuml/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall /usr/bin/make -f src/CMakeFiles/numl.dir/build.make src/CMakeFiles/numl.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libnuml.so cd /construction/biology/libnuml/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/numl.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -fno-strict-aliasing -fno-strict-aliasing -fPIC -pipe -O2 -fno-strict-aliasing -DNDEBUG -shared -Wl,-soname,libnuml.so.1 -o CMakeFiles/CMakeRelink.dir/libnuml.so.1.1.6 "CMakeFiles/numl.dir/numl/common/libnuml-version.cpp.o" CMakeFiles/numl.dir/numl/AtomicDescription.cpp.o CMakeFiles/numl.dir/numl/AtomicValue.cpp.o CMakeFiles/numl.dir/numl/CompositeDescription.cpp.o CMakeFiles/numl.dir/numl/CompositeValue.cpp.o CMakeFiles/numl.dir/numl/Dimension.cpp.o CMakeFiles/numl.dir/numl/DimensionDescription.cpp.o CMakeFiles/numl.dir/numl/NMBase.cpp.o CMakeFiles/numl.dir/numl/NUMLConvert.cpp.o CMakeFiles/numl.dir/numl/NUMLDocument.cpp.o CMakeFiles/numl.dir/numl/NUMLError.cpp.o CMakeFiles/numl.dir/numl/NUMLErrorLog.cpp.o CMakeFiles/numl.dir/numl/NUMLList.cpp.o CMakeFiles/numl.dir/numl/NUMLNamespaces.cpp.o CMakeFiles/numl.dir/numl/NUMLReader.cpp.o CMakeFiles/numl.dir/numl/NUMLTypeCodes.cpp.o CMakeFiles/numl.dir/numl/NUMLVisitor.cpp.o CMakeFiles/numl.dir/numl/NUMLWriter.cpp.o CMakeFiles/numl.dir/numl/OntologyTerm.cpp.o CMakeFiles/numl.dir/numl/ResultComponent.cpp.o CMakeFiles/numl.dir/numl/Tuple.cpp.o CMakeFiles/numl.dir/numl/TupleDescription.cpp.o -Wl,-z,origin,-rpath,/usr/local/lib /usr/local/lib/libsbml-static.a /usr/lib/libbz2.so /usr/lib/libz.so /usr/local/lib/libxml2.so cd /construction/biology/libnuml/.build/src && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libnuml.so.1.1.6 CMakeFiles/CMakeRelink.dir/libnuml.so.1 CMakeFiles/CMakeRelink.dir/libnuml.so Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/biology/libnuml/stage/usr/local/share/cmake/Modules/FindLIBNUML.cmake -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/common.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/extern.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/libnuml-config-unix.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/libnuml-config-win.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/libnuml-config.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/numlfwd.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/operationReturnValues.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/AtomicDescription.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/AtomicValue.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/CompositeDescription.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/CompositeValue.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/Dimension.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/DimensionDescription.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NMBase.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLDocument.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLError.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLErrorLog.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLErrorTable.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLList.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLNamespaces.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLReader.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLSimpleTester.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLTypeCodes.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLTypes.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLVisitor.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/NUMLWriter.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/OntologyTerm.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/ResultComponent.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/Tuple.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/TupleDescription.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/libnuml-version.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/libnuml-config-common.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/libnuml-package.h -- Installing: /construction/biology/libnuml/stage/usr/local/include/numl/common/libnuml-namespace.h -- Installing: /construction/biology/libnuml/stage/usr/local/lib/libnuml.so.1.1.6 -- Installing: /construction/biology/libnuml/stage/usr/local/lib/libnuml.so.1 -- Installing: /construction/biology/libnuml/stage/usr/local/lib/libnuml.so -- Installing: /construction/biology/libnuml/stage/usr/local/lib/cmake/numl-config.cmake -- Installing: /construction/biology/libnuml/stage/usr/local/lib/cmake/numl-config-release.cmake -- Installing: /construction/biology/libnuml/stage/usr/local/lib/cmake/numl-config-version.cmake -- Installing: /construction/biology/libnuml/stage/usr/local/lib/libnuml-static.a -- Installing: /construction/biology/libnuml/stage/usr/local/lib/cmake/numl-static-config.cmake -- Installing: /construction/biology/libnuml/stage/usr/local/lib/cmake/numl-static-config-release.cmake -- Installing: /construction/biology/libnuml/stage/usr/local/lib/cmake/numl-static-config-version.cmake -- Installing: /construction/biology/libnuml/stage/usr/local/share/libnuml/./LICENSE.txt -- Installing: /construction/biology/libnuml/stage/usr/local/share/libnuml/./README.md -- Installing: /construction/biology/libnuml/stage/usr/local/share/libnuml/./VERSION.txt /bin/rm -f -r /construction/biology/libnuml/stage/usr/local/share/cmake ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for libnuml-1.1.6 file sizes/checksums [44]: 0% file sizes/checksums [44]: 100% Service unavailablepacking files [44]: 0% packing files [44]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:00:26