------------------------------------------------------------------------------- -- Phase: Environment ------------------------------------------------------------------------------- NO_DEPENDS=1 UNAME_r=6.5 UNAME_m=x86_64 UNAME_p=x86_64 UNAME_v=unknown UNAME_s=DragonFly PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin SSL_NO_VERIFY_PEER=1 LANG=C HOME=/root USER=root TERM=dumb SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: showconfig ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/libcombine XDG_CONFIG_HOME=/construction/biology/libcombine XDG_CACHE_HOME=/construction/biology/libcombine/.cache HOME=/construction/biology/libcombine TMPDIR="/tmp" PATH=/construction/biology/libcombine/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/libcombine/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CCVER=gcc80 CMAKE_PREFIX_PATH="/usr/local" LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: CONFIGURE_ARGS ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ENV ------------------------------------------------------------------------------- XDG_DATA_HOME=/construction/biology/libcombine XDG_CONFIG_HOME=/construction/biology/libcombine XDG_CACHE_HOME=/construction/biology/libcombine/.cache HOME=/construction/biology/libcombine TMPDIR="/tmp" PATH=/construction/biology/libcombine/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin PKG_CONFIG_LIBDIR=/construction/biology/libcombine/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES CCVER=gcc80 LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local NOPROFILE=1 CC="cc" CFLAGS="-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lsbml -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS=" -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: MAKE_ARGS ------------------------------------------------------------------------------- DESTDIR=/construction/biology/libcombine/stage SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: PLIST_SUB ------------------------------------------------------------------------------- CMAKE_BUILD_TYPE="release" GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" GTK4_VERSION="4.0.0" OSREL=6.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PROFILE="@comment " DOCSDIR="share/doc/libcombine" EXAMPLESDIR="share/examples/libcombine" DATADIR="share/libcombine" WWWDIR="www/libcombine" ETCDIR="etc/libcombine" SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: SUB_LIST ------------------------------------------------------------------------------- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libcombine DOCSDIR=/usr/local/share/doc/libcombine EXAMPLESDIR=/usr/local/share/examples/libcombine WWWDIR=/usr/local/www/libcombine ETCDIR=/usr/local/etc/libcombine SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: /etc/make.conf ------------------------------------------------------------------------------- DPORTS_BUILDER=yes DISABLE_LICENSES=yes DEFAULT_VERSIONS=ssl=openssl FORCE_PACKAGE=yes DEVELOPER=yes DFLY_STING_XFAIL=yes USE_PACKAGE_DEPENDS_ONLY=yes PORTSDIR=/xports PORT_DBDIR=/options PKG_DBDIR=/var/db/pkg PKG_CACHEDIR=/var/cache/pkg PKG_COMPRESSION_FORMAT=.tgz DEVELOPER=1 WITH_CCACHE_BUILD=yes CCACHE_DIR=/ccache UID=0 ARCH=x86_64 OPSYS=DragonFly DFLYVERSION=600503 OSVERSION=9999999 OSREL=6.5 _OSRELEASE=6.5-SYNTH DISTDIR=/distfiles WRKDIRPREFIX=/construction BATCH=yes PACKAGE_BUILDING=yes PKG_CREATE_VERBOSE=yes MAKE_JOBS_NUMBER=13 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.5.0.pkg Installing /packages/All/libuv-1.44.2.pkg Installing /packages/All/indexinfo-0.3.1.pkg Installing /packages/All/gettext-runtime-0.21.1.pkg Installing /packages/All/openssl-1.1.1u,1.pkg Installing /packages/All/rhash-1.4.3.pkg Installing /packages/All/pkg-1.19.1_1.pkg Installing /packages/All/liblz4-1.9.4,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/zstd-1.5.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libarchive-3.6.2,1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ncurses-6.3.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from ncurses-6.3: -- To get the terminfo database please install the terminfo-db package: pkg install terminfo-db Installing /packages/All/cmake-core-3.25.1_1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/ccache-3.7.12_4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Create compiler links... create symlink for cc create symlink for cc (world) create symlink for c++ create symlink for c++ (world) create symlink for CC create symlink for CC (world) create symlink for gcc create symlink for gcc (world) create symlink for g++ create symlink for g++ (world) ===== Message from ccache-3.7.12_4: -- NOTE: Please read /usr/local/share/doc/ccache/ccache-howto-freebsd.txt for information on using ccache with FreeBSD ports and src. Installing /packages/All/readline-8.2.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libxml2-2.10.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/libffi-3.4.4.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/mpdecimal-2.5.1.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required Installing /packages/All/python39-3.9.17.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required ===== Message from python39-3.9.17: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py39-gdbm databases/py-gdbm@py39 py39-sqlite3 databases/py-sqlite3@py39 py39-tkinter x11-toolkits/py-tkinter@py39 Installing /packages/All/libsbml-5.19.0_2.pkg pkg: Repository Avalon cannot be opened. 'pkg update' required SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> libcombine-0.2.20 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> libcombine-0.2.20 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libcombine-0.2.20 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> libcombine-0.2.20 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libcombine-0.2.20 for building => SHA256 Checksum OK for sbmlteam-libCombine-v0.2.20_GH0.tar.gz. => SHA256 Checksum OK for fbergmann-zipper-c56a27f_GH0.tar.gz. => SHA256 Checksum OK for sebastiandev-minizip-e3a8cb7_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> libcombine-0.2.20 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by libcombine-0.2.20 for building ===> Extracting for libcombine-0.2.20 => SHA256 Checksum OK for sbmlteam-libCombine-v0.2.20_GH0.tar.gz. => SHA256 Checksum OK for fbergmann-zipper-c56a27f_GH0.tar.gz. => SHA256 Checksum OK for sebastiandev-minizip-e3a8cb7_GH0.tar.gz. Extracted Memory Use: 4.96M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for libcombine-0.2.20 ===> Applying ports patches for libcombine-0.2.20 from /xports/biology/libcombine/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> libcombine-0.2.20 depends on file: /usr/local/bin/cmake - found ===> libcombine-0.2.20 depends on file: /usr/local/bin/ccache - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> libcombine-0.2.20 depends on shared library: libsbml.so - found (/usr/local/lib/libsbml.so) ===> libcombine-0.2.20 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> libcombine-0.2.20 depends on file: /usr/local/bin/cmake - found ===> libcombine-0.2.20 depends on file: /usr/local/bin/ccache - found ===> libcombine-0.2.20 depends on shared library: libsbml.so - found (/usr/local/lib/libsbml.so) ===> libcombine-0.2.20 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Configuring for libcombine-0.2.20 ===> Performing out-of-source build /bin/mkdir -p /construction/biology/libcombine/.build -- The CXX compiler identification is GNU 8.3.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working CXX compiler: /usr/local/libexec/ccache/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found LIBSBML: sbml-static (found version "5.19.0") -- Could NOT find PkgConfig (missing: PKG_CONFIG_EXECUTABLE) -- Found ZLIB: /usr/lib/libz.so -- Looking for zipOpen3 -- Looking for zipOpen3 - found -- Looking for include file check.h -- Looking for include file check.h - not found -- Looking for include file expat.h -- Looking for include file expat.h - found -- Looking for include file errno.h -- Looking for include file errno.h - found -- Looking for include file ieeefp.h -- Looking for include file ieeefp.h - found -- Looking for include file math.h -- Looking for include file math.h - found -- Looking for include file sys/types.h -- Looking for include file sys/types.h - found -- Looking for include file float.h -- Looking for include file float.h - found -- Looking for sqrt in m -- Looking for sqrt in m - found -- ---------------------------------------------------------------------- libCombine version 0.2.20 ---------------------------------------------------------------------- Configured on host 'sting.dragonflybsd.org' host type = DragonFly host operating system = DragonFly 6.5 host CPU architecture = x86_64 General build flags: CC = cc CXX = /usr/local/libexec/ccache/c++ CPPFLAGS = -DLINUX CFLAGS = -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -fno-strict-aliasing -fPIC CXXFLAGS = -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC LDFLAGS = -lsbml -L/usr/local/lib SBML library configuration: SBML library = /usr/local/lib/libsbml-static.a;/usr/lib/libbz2.so;/usr/lib/libz.so;/usr/local/lib/libxml2.so SBML include dir = /usr/local/include libSBML compression support = 1 Zlib library configuration: Zlib library = /usr/lib/libz.so Zlib include dir = /usr/include Zipper library configuration: Zipper library = Zipper include dir = Other configuration settings: Installation $prefix = /usr/local -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_MODULE_LINKER_FLAGS FETCHCONTENT_FULLY_DISCONNECTED THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/biology/libcombine/.build SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for libcombine-0.2.20 /usr/local/bin/cmake -S/construction/biology/libcombine/libCombine-0.2.20 -B/construction/biology/libcombine/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libcombine/.build/CMakeFiles /construction/biology/libcombine/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine.dir/all --- /usr/bin/make -f src/CMakeFiles/Combine.dir/build.make src/CMakeFiles/Combine.dir/depend --- src/CMakeFiles/Combine-static.dir/all --- /usr/bin/make -f src/CMakeFiles/Combine-static.dir/build.make src/CMakeFiles/Combine-static.dir/depend --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/depend --- --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/depend --- --- src/CMakeFiles/Combine.dir/all --- cd /construction/biology/libcombine/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libcombine/libCombine-0.2.20 /construction/biology/libcombine/libCombine-0.2.20/src /construction/biology/libcombine/.build /construction/biology/libcombine/.build/src /construction/biology/libcombine/.build/src/CMakeFiles/Combine.dir/DependInfo.cmake --- src/CMakeFiles/Combine-static.dir/all --- cd /construction/biology/libcombine/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libcombine/libCombine-0.2.20 /construction/biology/libcombine/libCombine-0.2.20/src /construction/biology/libcombine/.build /construction/biology/libcombine/.build/src /construction/biology/libcombine/.build/src/CMakeFiles/Combine-static.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/Combine-static.dir/build.make src/CMakeFiles/Combine-static.dir/build --- src/CMakeFiles/Combine.dir/all --- /usr/bin/make -f src/CMakeFiles/Combine.dir/build.make src/CMakeFiles/Combine.dir/build --- src/CMakeFiles/Combine.dir/combine/combinearchive.cpp.o --- --- src/CMakeFiles/Combine.dir/combine/knownformats.cpp.o --- --- src/CMakeFiles/Combine.dir/combine/omexdescription.cpp.o --- --- src/CMakeFiles/Combine.dir/combine/util.cpp.o --- --- src/CMakeFiles/Combine.dir/combine/vcard.cpp.o --- --- src/CMakeFiles/Combine.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o --- --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o --- --- src/CMakeFiles/Combine-static.dir/combine/knownformats.cpp.o --- --- src/CMakeFiles/Combine-static.dir/combine/omexdescription.cpp.o --- --- src/CMakeFiles/Combine-static.dir/combine/util.cpp.o --- --- src/CMakeFiles/Combine-static.dir/combine/vcard.cpp.o --- --- src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o --- --- src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/tools.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/combine/combinearchive.cpp.o --- [ 9%] Building CXX object src/CMakeFiles/Combine.dir/combine/combinearchive.cpp.o --- src/CMakeFiles/Combine.dir/combine/util.cpp.o --- [ 7%] Building CXX object src/CMakeFiles/Combine.dir/combine/util.cpp.o --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/combine/util.cpp.o --- [ 7%] Building CXX object src/CMakeFiles/Combine-static.dir/combine/util.cpp.o --- src/CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o --- [ 9%] Building CXX object src/CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o --- src/CMakeFiles/Combine-static.dir/combine/knownformats.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/Combine-static.dir/combine/knownformats.cpp.o --- src/CMakeFiles/Combine-static.dir/combine/vcard.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/Combine-static.dir/combine/vcard.cpp.o --- src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o --- [ 14%] Building CXX object src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/combine/vcard.cpp.o --- [ 16%] Building CXX object src/CMakeFiles/Combine.dir/combine/vcard.cpp.o --- src/CMakeFiles/Combine.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o --- [ 18%] Building CXX object src/CMakeFiles/Combine.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o --- src/CMakeFiles/Combine.dir/combine/util.cpp.o --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/combine/util.cpp.o -MF CMakeFiles/Combine.dir/combine/util.cpp.o.d -o CMakeFiles/Combine.dir/combine/util.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/combine/util.cpp --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/combine/combinearchive.cpp.o --- --- src/CMakeFiles/Combine-static.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o -MF CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o.d -o CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o -c /construction/biology/libcombine/libCombine-0--- src/CMakeFiles/Combine.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/combine/combinearchive.cpp.o -MF CMakeFiles/Combine.dir/combine/combinearchive.cpp.o.d -o CMakeFiles/Combine.dir/combine/combinearchive.cpp.o -c /construction/biology/libcombine/libCombin--- src/CMakeFiles/Combine-static.dir/all --- .2.20/src/combine/combinearchive.cpp --- src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/tools.cpp.o --- [ 20%] Building CXX object src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/tools.cpp.o --- src/CMakeFiles/Combine-static.dir/combine/util.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- e-0.2.20/src/combine/combinearchive.cpp --- src/CMakeFiles/Combine-static.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/combine/util.cpp.o -MF CMakeFiles/Combine-static.dir/combine/util.cpp.o.d -o CMakeFiles/Combine-static.dir/combine/util.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/combine/util.cpp --- src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/combine/vcard.cpp.o --- --- src/CMakeFiles/Combine-static.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o -MF CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o.d -o CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o -c --- src/CMakeFiles/Combine.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src 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-I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaBase.cpp.o -MF CMakeFiles/Combine.dir/omex/CaBase.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaBase.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaBase.cpp --- src/CMakeFiles/Combine.dir/omex/common/libcombine-version.cpp.o --- [ 36%] Building CXX object src/CMakeFiles/Combine.dir/omex/common/libcombine-version.cpp.o --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/omex/common/CaOperationReturnValues.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex 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Building CXX object src/CMakeFiles/Combine.dir/omex/CaConstructorException.cpp.o --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/zipper.cpp.o --- [ 40%] Building CXX object src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/zipper.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/zipper.cpp.o -MF CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/zipper.cpp.o.d -o CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/zipper.cpp.o -c /construc--- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/omex/CaContent.cpp.o --- --- src/CMakeFiles/Combine.dir/omex/CaConstructorException.cpp.o --- --- src/CMakeFiles/Combine-static.dir/all --- tion/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper/zipper.cpp --- src/CMakeFiles/Combine.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaConstructorException.cpp.o -MF CMakeFiles/Combine.dir/omex/CaConstructorException.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaConstructorException.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaConstructorException.cpp --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/omex/common/CaOperationReturnValues.cpp.o --- [ 41%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/common/CaOperationReturnValues.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/common/CaOperationReturnValues.cpp.o -MF CMakeFiles/Combine-static.dir/omex/common/CaOperationReturnValues.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/common/CaOperationReturnValues.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/common/CaOperationReturnValues.cpp --- src/CMakeFiles/Combine-static.dir/omex/common/libcombine-version.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/omex/CaContent.cpp.o --- [ 43%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaContent.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaContent.cpp.o -MF CMakeFiles/Combine.dir/omex/CaContent.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaContent.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaContent.cpp --- src/CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o --- --- src/CMakeFiles/Combine-static.dir/all --- [ 45%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/common/libcombine-version.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/common/libcombine-version.cpp.o -MF CMakeFiles/Combine-static.dir/omex/common/libcombine-version.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/common/libcombine-version.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/common/libcombine-version.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaBase.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/omex/CaError.cpp.o --- --- src/CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o --- [ 47%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o -MF CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaCrossRef.cpp --- src/CMakeFiles/Combine-static.dir/all --- [ 49%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaBase.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaBase.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaBase.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaBase.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaBase.cpp --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/omex/CaError.cpp.o --- [ 50%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaError.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaError.cpp.o -MF CMakeFiles/Combine.dir/omex/CaError.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaError.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaError.cpp --- src/CMakeFiles/Combine.dir/omex/CaErrorLog.cpp.o --- --- src/CMakeFiles/Combine.dir/omex/CaListOf.cpp.o --- [ 52%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaListOf.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaListOf.cpp.o -MF CMakeFiles/Combine.dir/omex/CaListOf.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaListOf.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaListOf.cpp --- src/CMakeFiles/Combine.dir/omex/CaListOfContents.cpp.o --- --- src/CMakeFiles/Combine.dir/omex/CaErrorLog.cpp.o --- [ 54%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaErrorLog.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS 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56%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaListOfContents.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaListOfContents.cpp.o -MF CMakeFiles/Combine.dir/omex/CaListOfContents.cpp.o.d 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaListOfCrossRefs.cpp.o -MF CMakeFiles/Combine.dir/omex/CaListOfCrossRefs.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaListOfCrossRefs.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaListOfCrossRefs.cpp --- src/CMakeFiles/Combine.dir/omex/CaNamespaces.cpp.o --- [ 60%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaNamespaces.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaNamespaces.cpp.o -MF CMakeFiles/Combine.dir/omex/CaNamespaces.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaNamespaces.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaNamespaces.cpp --- src/CMakeFiles/Combine.dir/omex/CaOmexManifest.cpp.o --- --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/omex/CaConstructorException.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- [ 61%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaOmexManifest.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX 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Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaConstructorException.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaConstructorException.cpp.o -MF 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-I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaReader.cpp.o -MF CMakeFiles/Combine.dir/omex/CaReader.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaReader.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaReader.cpp --- src/CMakeFiles/Combine.dir/omex/CaTypeCodes.cpp.o --- [ 67%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaTypeCodes.cpp.o --- src/CMakeFiles/Combine-static.dir/all --- --- src/CMakeFiles/Combine-static.dir/omex/CaContent.cpp.o --- --- src/CMakeFiles/Combine.dir/all --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaTypeCodes.cpp.o -MF CMakeFiles/Combine.dir/omex/CaTypeCodes.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaTypeCodes.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaTypeCodes.cpp --- src/CMakeFiles/Combine-static.dir/all --- [ 69%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaContent.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaContent.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaContent.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaContent.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaContent.cpp --- src/CMakeFiles/Combine.dir/all --- --- src/CMakeFiles/Combine.dir/omex/CaVisitor.cpp.o --- [ 70%] Building CXX object src/CMakeFiles/Combine.dir/omex/CaVisitor.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 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-DCombine_EXPORTS -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -fPIC -std=gnu++11 -MD -MT src/CMakeFiles/Combine.dir/omex/CaWriter.cpp.o -MF CMakeFiles/Combine.dir/omex/CaWriter.cpp.o.d -o CMakeFiles/Combine.dir/omex/CaWriter.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaWriter.--- src/CMakeFiles/Combine-static.dir/all --- cd 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/construction/biology/libcombine/libCombine-0.2.20/src/omex/CaCros--- src/CMakeFiles/Combine.dir/all --- cpp --- src/CMakeFiles/Combine-static.dir/all --- sRef.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaErrorLog.cpp.o --- [ 76%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaErrorLog.cpp.o --- src/CMakeFiles/Combine-static.dir/omex/CaListOf.cpp.o --- --- src/CMakeFiles/Combine-static.dir/omex/CaErrorLog.cpp.o --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaErrorLog.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaErrorLog.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaErrorLog.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaErrorLog.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaListOfContents.cpp.o --- --- src/CMakeFiles/Combine-static.dir/omex/CaError.cpp.o --- [ 78%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaError.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaError.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaError.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaError.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaError.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaListOf.cpp.o --- [ 80%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaListOf.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB 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Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaListOfContents.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaListOfContents.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaListOfContents.cpp.o.d -o 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-O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaListOfCrossRefs.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaListOfCrossRefs.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaListOfCrossRefs.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaListOfCrossRefs.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaNamespaces.cpp.o --- [ 85%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaNamespaces.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaNamespaces.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaNamespaces.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaNamespaces.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaNamespaces.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaOmexManifest.cpp.o --- --- src/CMakeFiles/Combine-static.dir/omex/CaReader.cpp.o --- --- src/CMakeFiles/Combine-static.dir/omex/CaTypeCodes.cpp.o --- --- src/CMakeFiles/Combine-static.dir/omex/CaReader.cpp.o --- [ 90%] 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-pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaOmexManifest.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaOmexManifest.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaOmexManifest.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src--- src/CMakeFiles/Combine-static.dir/omex/CaTypeCodes.cpp.o --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaTypeCodes.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaTypeCodes.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaTypeCodes.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaT--- src/CMakeFiles/Combine-static.dir/omex/CaOmexManifest.cpp.o --- /omex/CaOmexManifest.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaTypeCodes.cpp.o --- ypeCodes.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaReader.cpp.o --- cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaReader.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaReader.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaReader.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaReader.cpp--- src/CMakeFiles/Combine-static.dir/omex/CaVisitor.cpp.o --- [ 92%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaVisitor.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaVisitor.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaVisitor.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaVisitor.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaVisitor.cpp --- src/CMakeFiles/Combine-static.dir/omex/CaWriter.cpp.o --- [ 94%] Building CXX object src/CMakeFiles/Combine-static.dir/omex/CaWriter.cpp.o cd /construction/biology/libcombine/.build/src && /usr/local/libexec/ccache/c++ -DLINUX -DUSE_ZLIB -I/construction/biology/libcombine/.build/src/src/omex -I/construction/biology/libcombine/.build/src/src -I/construction/biology/libcombine/.build/src -I/construction/biology/libcombine/libCombine-0.2.20/src -I/construction/biology/libcombine/libCombine-0.2.20/src/omex -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper -I/construction/biology/libcombine/libCombine-0.2.20/submodules/zipper/zipper -I/usr/local/include/sbml/compress -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -std=gnu++11 -MD -MT src/CMakeFiles/Combine-static.dir/omex/CaWriter.cpp.o -MF CMakeFiles/Combine-static.dir/omex/CaWriter.cpp.o.d -o CMakeFiles/Combine-static.dir/omex/CaWriter.cpp.o -c /construction/biology/libcombine/libCombine-0.2.20/src/omex/CaWriter.cpp--- src/libCombine-static.a --- [ 96%] Linking CXX static library libCombine-static.a cd /construction/biology/libcombine/.build/src && /usr/local/bin/cmake -P CMakeFiles/Combine-static.dir/cmake_clean_target.cmake cd /construction/biology/libcombine/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Combine-static.dir/link.txt --verbose=1 /usr/bin/ar qc libCombine-static.a "CMakeFiles/Combine-static.dir/combine/combinearchive.cpp.o" "CMakeFiles/Combine-static.dir/combine/knownformats.cpp.o" "CMakeFiles/Combine-static.dir/combine/omexdescription.cpp.o" "CMakeFiles/Combine-static.dir/combine/util.cpp.o" "CMakeFiles/Combine-static.dir/combine/vcard.cpp.o" "CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o" "CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/tools.cpp.o" "CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/unzipper.cpp.o" "CMakeFiles/Combine-static.dir/__/submodules/zipper/zipper/zipper.cpp.o" "CMakeFiles/Combine-static.dir/omex/common/CaOperationReturnValues.cpp.o" "CMakeFiles/Combine-static.dir/omex/common/libcombine-version.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaBase.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaConstructorException.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaContent.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaCrossRef.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaError.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaErrorLog.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaListOf.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaListOfContents.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaListOfCrossRefs.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaNamespaces.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaOmexManifest.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaReader.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaTypeCodes.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaVisitor.cpp.o" "CMakeFiles/Combine-static.dir/omex/CaWriter.cpp.o" /usr/bin/ranlib libCombine-static.a [ 96%] Built target Combine-static --- src/CMakeFiles/Combine.dir/all --- --- src/libCombine.so.0.2.20 --- [ 98%] Linking CXX shared library libCombine.so cd /construction/biology/libcombine/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Combine.dir/link.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -lsbml -L/usr/local/lib -shared -Wl,-soname,libCombine.so.0 -o libCombine.so.0.2.20 CMakeFiles/Combine.dir/combine/combinearchive.cpp.o CMakeFiles/Combine.dir/combine/knownformats.cpp.o CMakeFiles/Combine.dir/combine/omexdescription.cpp.o CMakeFiles/Combine.dir/combine/util.cpp.o CMakeFiles/Combine.dir/combine/vcard.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/tools.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/unzipper.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/zipper.cpp.o CMakeFiles/Combine.dir/omex/common/CaOperationReturnValues.cpp.o "CMakeFiles/Combine.dir/omex/common/libcombine-version.cpp.o" CMakeFiles/Combine.dir/omex/CaBase.cpp.o CMakeFiles/Combine.dir/omex/CaConstructorException.cpp.o CMakeFiles/Combine.dir/omex/CaContent.cpp.o CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o CMakeFiles/Combine.dir/omex/CaError.cpp.o CMakeFiles/Combine.dir/omex/CaErrorLog.cpp.o CMakeFiles/Combine.dir/omex/CaListOf.cpp.o CMakeFiles/Combine.dir/omex/CaListOfContents.cpp.o CMakeFiles/Combine.dir/omex/CaListOfCrossRefs.cpp.o CMakeFiles/Combine.dir/omex/CaNamespaces.cpp.o CMakeFiles/Combine.dir/omex/CaOmexManifest.cpp.o CMakeFiles/Combine.dir/omex/CaReader.cpp.o CMakeFiles/Combine.dir/omex/CaTypeCodes.cpp.o CMakeFiles/Combine.dir/omex/CaVisitor.cpp.o CMakeFiles/Combine.dir/omex/CaWriter.cpp.o /usr/lib/libz.so /usr/local/lib/libsbml-static.a /usr/lib/libbz2.so /usr/lib/libz.so /usr/local/lib/libxml2.so cd /construction/biology/libcombine/.build/src && /usr/local/bin/cmake -E cmake_symlink_library libCombine.so.0.2.20 libCombine.so.0 libCombine.so [100%] Built target Combine /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libcombine/.build/CMakeFiles 0 SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for libcombine-0.2.20 ===> Generating temporary packing list /usr/local/bin/cmake -S/construction/biology/libcombine/libCombine-0.2.20 -B/construction/biology/libcombine/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libcombine/.build/CMakeFiles /construction/biology/libcombine/.build//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all /usr/bin/make -f src/CMakeFiles/Combine.dir/build.make src/CMakeFiles/Combine.dir/depend cd /construction/biology/libcombine/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libcombine/libCombine-0.2.20 /construction/biology/libcombine/libCombine-0.2.20/src /construction/biology/libcombine/.build /construction/biology/libcombine/.build/src /construction/biology/libcombine/.build/src/CMakeFiles/Combine.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/Combine.dir/build.make src/CMakeFiles/Combine.dir/build [ 50%] Built target Combine /usr/bin/make -f src/CMakeFiles/Combine-static.dir/build.make src/CMakeFiles/Combine-static.dir/depend cd /construction/biology/libcombine/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/biology/libcombine/libCombine-0.2.20 /construction/biology/libcombine/libCombine-0.2.20/src /construction/biology/libcombine/.build /construction/biology/libcombine/.build/src /construction/biology/libcombine/.build/src/CMakeFiles/Combine-static.dir/DependInfo.cmake /usr/bin/make -f src/CMakeFiles/Combine-static.dir/build.make src/CMakeFiles/Combine-static.dir/build [100%] Built target Combine-static /usr/local/bin/cmake -E cmake_progress_start /construction/biology/libcombine/.build/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall /usr/bin/make -f src/CMakeFiles/Combine.dir/build.make src/CMakeFiles/Combine.dir/preinstall Linking CXX shared library CMakeFiles/CMakeRelink.dir/libCombine.so cd /construction/biology/libcombine/.build/src && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/Combine.dir/relink.txt --verbose=1 /usr/local/libexec/ccache/c++ -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fno-strict-aliasing -fPIC -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -DNDEBUG -lsbml -L/usr/local/lib -shared -Wl,-soname,libCombine.so.0 -o CMakeFiles/CMakeRelink.dir/libCombine.so.0.2.20 CMakeFiles/Combine.dir/combine/combinearchive.cpp.o CMakeFiles/Combine.dir/combine/knownformats.cpp.o CMakeFiles/Combine.dir/combine/omexdescription.cpp.o CMakeFiles/Combine.dir/combine/util.cpp.o CMakeFiles/Combine.dir/combine/vcard.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/CDirEntry.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/tools.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/unzipper.cpp.o CMakeFiles/Combine.dir/__/submodules/zipper/zipper/zipper.cpp.o CMakeFiles/Combine.dir/omex/common/CaOperationReturnValues.cpp.o "CMakeFiles/Combine.dir/omex/common/libcombine-version.cpp.o" CMakeFiles/Combine.dir/omex/CaBase.cpp.o CMakeFiles/Combine.dir/omex/CaConstructorException.cpp.o CMakeFiles/Combine.dir/omex/CaContent.cpp.o CMakeFiles/Combine.dir/omex/CaCrossRef.cpp.o CMakeFiles/Combine.dir/omex/CaError.cpp.o CMakeFiles/Combine.dir/omex/CaErrorLog.cpp.o CMakeFiles/Combine.dir/omex/CaListOf.cpp.o CMakeFiles/Combine.dir/omex/CaListOfContents.cpp.o CMakeFiles/Combine.dir/omex/CaListOfCrossRefs.cpp.o CMakeFiles/Combine.dir/omex/CaNamespaces.cpp.o CMakeFiles/Combine.dir/omex/CaOmexManifest.cpp.o CMakeFiles/Combine.dir/omex/CaReader.cpp.o CMakeFiles/Combine.dir/omex/CaTypeCodes.cpp.o CMakeFiles/Combine.dir/omex/CaVisitor.cpp.o CMakeFiles/Combine.dir/omex/CaWriter.cpp.o /usr/lib/libz.so /usr/local/lib/libsbml-static.a /usr/lib/libbz2.so /usr/lib/libz.so /usr/local/lib/libxml2.so cd /construction/biology/libcombine/.build/src && /usr/local/bin/cmake -E cmake_symlink_library CMakeFiles/CMakeRelink.dir/libCombine.so.0.2.20 CMakeFiles/CMakeRelink.dir/libCombine.so.0 CMakeFiles/CMakeRelink.dir/libCombine.so Installing the project stripped... /usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /construction/biology/libcombine/stage/usr/local/share/cmake/Modules/FindLIBCOMBINE.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/include/combine/combinearchive.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/combine/knownformats.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/combine/omexdescription.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/combine/util.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/combine/vcard.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/CaOperationReturnValues.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/combinefwd.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/common.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/extern.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/libcombine-config.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaBase.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaConstructorException.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaContent.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaCrossRef.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaError.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaErrorLog.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaErrorTable.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaListOf.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaListOfContents.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaListOfCrossRefs.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaNamespaces.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaOmexManifest.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaReader.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaTypeCodes.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaTypes.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaVisitor.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/CaWriter.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/libcombine-config-common.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/libcombine-namespace.h -- Installing: /construction/biology/libcombine/stage/usr/local/include/omex/common/libcombine-version.h -- Installing: /construction/biology/libcombine/stage/usr/local/lib/libCombine.so.0.2.20 -- Installing: /construction/biology/libcombine/stage/usr/local/lib/libCombine.so.0 -- Installing: /construction/biology/libcombine/stage/usr/local/lib/libCombine.so -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-targets.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-targets-release.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-config.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-config-version.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/lib/libCombine-static.a -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-static-targets.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-static-targets-release.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-static-config.cmake -- Installing: /construction/biology/libcombine/stage/usr/local/lib/cmake/Combine-static-config-version.cmake ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for libcombine-0.2.20 file sizes/checksums [43]: 0% file sizes/checksums [43]: 100% Service unavailablepacking files [43]: 0% packing files [43]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:26