------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_3,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/gmake-4.3_2.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/fftw3-3.3.8_6.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/pciids-20200819.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/mesa-libs-19.0.8_2.txz Installing /packages/All/gl2ps-1.4.0.txz Installing /packages/All/freetype2-2.10.2.txz ===== Message from freetype2-2.10.2: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/tcl86-8.6.10.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/tk86-8.6.10_1.txz Installing /packages/All/togl-2.0_1.txz ===== Message from togl-2.0_1: -- ===> NOTICE: The togl port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/bwidget-1.9.14.txz Installing /packages/All/libgpg-error-1.39.txz Installing /packages/All/libgcrypt-1.8.5.txz Installing /packages/All/pcre-8.44.txz Installing /packages/All/libiconv-1.16.txz Installing /packages/All/ncurses-6.2.20200831.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.9.txz ===== Message from python37-3.7.9: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.56.3_9,1.txz No schema files found: doing nothing. Installing /packages/All/libedit-3.1.20191231,1.txz Installing /packages/All/sqlite3-3.33.0,1.txz Installing /packages/All/nettle-3.6.txz Installing /packages/All/libtasn1-4.16.0.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/ca_root_nss-3.56.txz ===== Message from ca_root_nss-3.56: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/bash-5.0.18_3.txz Installing /packages/All/bash-completion-2.11,2.txz ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. Installing /packages/All/p11-kit-0.23.21.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_3.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.15.txz Installing /packages/All/dbus-1.12.20.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/libproxy-0.4.15.txz Installing /packages/All/gsettings-desktop-schemas-3.28.1.txz Installing /packages/All/glib-networking-2.56.1_3.txz Installing /packages/All/libsoup-2.62.3.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/libmspack-0.10.1.txz Installing /packages/All/perl5-5.32.0.txz Installing /packages/All/hunspell-1.7.0_2.txz Installing /packages/All/enchant2-2.2.3_4.txz Installing /packages/All/fribidi-0.19.7.txz Installing /packages/All/giflib-5.2.1.txz Installing /packages/All/webp-1.1.0.txz Installing /packages/All/libsecret-0.18.6_1.txz Installing /packages/All/shared-mime-info-2.0.txz Installing /packages/All/gdk-pixbuf2-2.40.0.txz Installing /packages/All/libnotify-0.7.8.txz Installing /packages/All/hyphen-2.8.8.txz Installing /packages/All/icu-67.1,1.txz Installing /packages/All/lcms2-2.11_1.txz Installing /packages/All/openjpeg-2.3.1.txz Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.7.2.txz Installing /packages/All/harfbuzz-icu-2.7.2.txz Installing /packages/All/brotli-1.0.9,1.txz Installing /packages/All/woff2-1.0.2_4.txz Installing /packages/All/xkeyboard-config-2.30.txz Installing /packages/All/libxkbcommon-0.10.0_2.txz ===== Message from libxkbcommon-0.10.0_2: -- If arrow keys don't work under X11 switch to legacy rules e.g., For sh/bash/ksh/zsh run and (optionally) add into ~/.profile: export XKB_DEFAULT_RULES=xorg For csh/tcsh run and (optionally) add into ~/.login: setenv XKB_DEFAULT_RULES xorg Installing /packages/All/libwpe-1.4.0.1.txz Installing /packages/All/wpebackend-fdo-1.4.1.txz Installing /packages/All/atk-2.36.0.txz Installing /packages/All/pixman-0.40.0_1.txz Installing /packages/All/cairo-1.16.0,2.txz Installing /packages/All/libepoxy-1.5.4.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libXtst-1.2.3_2.txz Installing /packages/All/at-spi2-core-2.36.0.txz Installing /packages/All/at-spi2-atk-2.34.2.txz Installing /packages/All/nspr-4.28.txz Installing /packages/All/spidermonkey60-60.9.0_4.txz ===== Message from spidermonkey60-60.9.0_4: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/polkit-0.116.txz ===> Creating groups. Creating group 'polkitd' with gid '565'. ===> Creating users Creating user 'polkitd' with uid '565'. Installing /packages/All/libXinerama-1.1.4_2,1.txz Installing /packages/All/argyllcms-1.9.2_5.txz Installing /packages/All/colord-1.3.5.txz ===> Creating groups. Creating group 'colord' with gid '970'. ===> Creating users Creating user 'colord' with uid '970'. Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.18.1_1.txz Installing /packages/All/gobject-introspection-1.56.1_1,1.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.7_3.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.3.3_1.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/pango-1.42.4_4.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/gtk-update-icon-cache-3.24.20.txz Installing /packages/All/adwaita-icon-theme-3.28.0.txz Installing /packages/All/libcroco-0.6.13.txz Installing /packages/All/libgsf-1.14.47_1.txz Installing /packages/All/librsvg2-2.40.21.txz Installing /packages/All/wayland-protocols-1.20.txz Installing /packages/All/libXcomposite-0.4.5,1.txz Installing /packages/All/libXcursor-1.2.0.txz Installing /packages/All/gtk3-3.24.20.txz Installing /packages/All/libxslt-1.1.34_1.txz Installing /packages/All/libunwind-20200331_1.txz Installing /packages/All/gstreamer1-1.16.2.txz Installing /packages/All/json-glib-1.4.4.txz Installing /packages/All/geoclue-2.5.5.txz Installing /packages/All/orc-0.4.31.txz Installing /packages/All/iso-codes-4.2.txz Installing /packages/All/gstreamer1-plugins-1.16.2.txz Installing /packages/All/gstreamer1-plugins-bad-1.16.2.txz Installing /packages/All/pygobject3-common-3.28.3_2.txz Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-cairo-1.18.1_1.txz Installing /packages/All/py37-gobject3-3.28.3_2.txz Installing /packages/All/graphene-1.10.0.txz Installing /packages/All/gstreamer1-plugins-gl-1.16.2.txz Installing /packages/All/webkit2-gtk3-2.28.4.txz Installing /packages/All/dconf-0.36.0.txz Installing /packages/All/gtk2-2.24.32.txz Installing /packages/All/libIDL-0.8.14_4.txz Installing /packages/All/ORBit2-2.14.19_2.txz Installing /packages/All/gconf2-3.2.6_5.txz Installing /packages/All/wx30-gtk3-3.0.5.1.txz Installing /packages/All/openbabel-2.4.1_5.txz Installing /packages/All/libltdl-2.4.6.txz Installing /packages/All/liblqr-1-0.4.2.txz ===== Message from liblqr-1-0.4.2: -- NOTE: In order to compile examples for liblqr, you will also need pngwriter port (/xports/graphics/pngwriter). Examples are located in /usr/local/share/examples/liblqr-1 Installing /packages/All/libraqm-0.6.0.txz Installing /packages/All/libraw-0.19.5.txz Installing /packages/All/libwmf-0.2.8.4_15.txz ===== Message from libwmf-0.2.8.4_15: -- ===> NOTICE: The libwmf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gsfonts-8.11_8.txz Installing /packages/All/pkgconf-1.7.3,1.txz Installing /packages/All/libidn-1.35.txz Installing /packages/All/jbig2dec-0.18.txz Installing /packages/All/poppler-data-0.4.9_5.txz Installing /packages/All/ghostscript9-agpl-base-9.52_8.txz ===== Message from ghostscript9-agpl-base-9.52_8: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Installing /packages/All/ghostscript9-agpl-x11-9.52.txz Installing /packages/All/ImageMagick6-6.9.11.6,1.txz Installing /packages/All/freeglut-3.0.0_2.txz ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. Installing /packages/All/jasper-2.0.16_1.txz Installing /packages/All/netpbm-10.91.01.txz Installing /packages/All/libxkbfile-1.1.0.txz Installing /packages/All/xwd-1.0.7.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:02:45 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by xcrysden-1.6.2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by xcrysden-1.6.2 for building => SHA256 Checksum OK for xcrysden-1.6.2.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by xcrysden-1.6.2 for building ===> Extracting for xcrysden-1.6.2 ===> xcrysden-1.6.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by xcrysden-1.6.2 for building => SHA256 Checksum OK for xcrysden-1.6.2.tar.gz. Extracted Memory Use: 7.59M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for xcrysden-1.6.2 ===> Applying ports patches for xcrysden-1.6.2 from /xports/science/xcrysden/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on executable: gfortran8 - found ===> xcrysden-1.6.2 depends on package: gmake>=4.3 - found ===> xcrysden-1.6.2 depends on file: /usr/local/bin/as - found ===> xcrysden-1.6.2 depends on package: xorgproto>=0 - found ===> xcrysden-1.6.2 depends on package: xorgproto>=0 - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> xcrysden-1.6.2 depends on shared library: libgl2ps.so - found (/usr/local/lib/libgl2ps.so) ===> xcrysden-1.6.2 depends on shared library: libTogl2.0.so - found (/usr/local/lib/Togl2.0/libTogl2.0.so) ===> xcrysden-1.6.2 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> xcrysden-1.6.2 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> xcrysden-1.6.2 depends on shared library: libtk86.so - found (/usr/local/lib/libtk86.so) ===> xcrysden-1.6.2 depends on shared library: libtcl86.so - found (/usr/local/lib/libtcl86.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on executable: gfortran8 - found ===> xcrysden-1.6.2 depends on package: gmake>=4.3 - found ===> xcrysden-1.6.2 depends on file: /usr/local/bin/as - found ===> xcrysden-1.6.2 depends on package: xorgproto>=0 - found ===> xcrysden-1.6.2 depends on package: xorgproto>=0 - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> xcrysden-1.6.2 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> xcrysden-1.6.2 depends on shared library: libgl2ps.so - found (/usr/local/lib/libgl2ps.so) ===> xcrysden-1.6.2 depends on shared library: libTogl2.0.so - found (/usr/local/lib/Togl2.0/libTogl2.0.so) ===> xcrysden-1.6.2 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> xcrysden-1.6.2 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> xcrysden-1.6.2 depends on shared library: libtk86.so - found (/usr/local/lib/libtk86.so) ===> xcrysden-1.6.2 depends on shared library: libtcl86.so - found (/usr/local/lib/libtcl86.so) ===> Configuring for xcrysden-1.6.2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for xcrysden-1.6.2 gmake[2]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2' if test ! -d bin ; then mkdir bin; fi #------------------------------# # # # Managing XCRYSDEN Tcl-code # # # if test -d external/src ; then \ cd external/src; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" tcl; \ fi #------------------------------# if test -d external/src ; then \ cd external/src; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" tk; \ fi if test -d external/src ; then \ cd external/src; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" mesa; \ fi if test -d external/src ; then \ cd external/src; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" togl; \ fi if test -d external/src ; then \ cd external/src; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" fftw; \ fi if test -d external/src ; then \ cd external/src; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" bwidget; \ fi cd Tcl; gmake #------------------------------# # # # Compiling XCRYSDEN C-code # #------------------------------# # # # Compiling XCRYSDEN F-code # # # #------------------------------# cd F/SRC_nn; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_nn' gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c -o nn.o nn.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c -o dirlat.o dirlat.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c -o ord2.o ord2.f if test -f nn.exe ; then cp nn.exe ../../bin ; \ elif test -f nn ; then cp nn ../../bin ; fi # # #------------------------------# cd C; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" compile gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/C' make TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2 make[4]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/C' gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c detnsplit.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcAppInit.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcballstick.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcviewport.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcLabels.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c vectors.c gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl' gmake[3]: 'tclIndex' is up to date. gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl' cd Tcl/fs; gmake gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcDisplayFunc2.c gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl/fs' gmake[3]: 'tclIndex' is up to date. gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl/fs' gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcAtomAdd.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c loadValues.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c hpsort.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c auxilproc.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcdebug.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c 3D.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcDisplayFunc.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c readstrf.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c mxmymz.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c remakestr.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcSelect.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c readisodata.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c lighting.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcGLparam.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 nn.o dirlat.o ord2.o -o nn readstrf.c: In function 'ReadCoor': readstrf.c:1179:24: warning: 'forc' may be used uninitialized in this function [-Wmaybe-uninitialized] double (*coor)[3], (*forc)[3]; ^~~~ /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_nn' cd F/SRC_spaghetti; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c -o get_ei.o get_ei.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c -o get_k.o get_k.f gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' cd F; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c colorplane.c gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F' cd SRC_spaghetti; make make[4]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' make[4]: Nothing to be done for 'default'. make[4]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c gengeom.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c multhexa.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c multatom.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c box.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c ttcplane.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c isorender.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c polygonise.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c polygonise_auxil.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c readf1.f xcGLparam.c: In function 'XC_SetGLparamCmd': xcGLparam.c:507:6: warning: 'glparam.what' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( glparam.what == GLPAR_MATERIAL ) { ^ xcGLparam.c:738:44: warning: 'glparam.face_frontface' may be used uninitialized in this function [-Wmaybe-uninitialized] frontface_isosurf[glparam.face_what] = glparam.face_frontface; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ xcGLparam.c:738:44: warning: 'glparam.face_what' may be used uninitialized in this function [-Wmaybe-uninitialized] xcGLparam.c:619:5: warning: 'glparam.mat_what_isoside' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( glparam.mat_what_isoside == GLPAR_MAT_WHAT_ISOFRONTSIDE ) { ^ xcGLparam.c:618:15: warning: 'glparam.mat_what_isosurf' may be used uninitialized in this function [-Wmaybe-uninitialized] else if ( glparam.mat_what_isosurf == GLPAR_MAT_WHAT_ISONEG ) { ^ xcGLparam.c:508:8: warning: 'glparam.mat_what' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( glparam.mat_what == GLPAR_MAT_WHAT_STRUCTURE ) { ^ xcGLparam.c:746:22: warning: 'glparam.blend_dfunc' may be used uninitialized in this function [-Wmaybe-uninitialized] blend_isosurf.dfunc = glparam.blend_dfunc; ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ xcGLparam.c:744:22: warning: 'glparam.blend_sfunc' may be used uninitialized in this function [-Wmaybe-uninitialized] blend_isosurf.sfunc = glparam.blend_sfunc; ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ xcGLparam.c:742:8: warning: 'glparam.blend_what' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( glparam.blend_what == GLPAR_BLEND_WHAT_ISOSURF ) { ^ gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcIsoSurf.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c voronoi.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c auxil.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c wigner.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c wigner12d.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c reduce.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c convexhull.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcBz.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcSuperCell.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcPrimitives.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c p2c.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c setOpenGLState.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c calplane.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c atomlab.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c memory.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c readXYZ.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c recvec.f xcGLparam.c: In function 'XC_GetGLparamCmd': xcGLparam.c:1378:5: warning: 'glparam.mat_what_isoside' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( glparam.mat_what_isoside == GLPAR_MAT_WHAT_ISOFRONTSIDE ) { ^ xcGLparam.c:1744:15: warning: 'glparam.mat_what_isosurf' may be used uninitialized in this function [-Wmaybe-uninitialized] else if ( glparam.mat_what_isosurf == GLPAR_MAT_WHAT_ISONEG ) { ^ xcGLparam.c:1334:8: warning: 'glparam.mat_what' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( glparam.mat_what == GLPAR_MAT_WHAT_STRUCTURE ) { ^ xcGLparam.c:2012:11: warning: 'glparam.what' may be used uninitialized in this function [-Wmaybe-uninitialized] else if ( glparam.what == GLPAR_FOG ) { ^ gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c isoMalloc.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c str2xcr.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c isoInterpolate.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c fracCoor.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c multislab.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c readPlvertex.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c splineInt.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c paraSize.c xcIsoSurf.c: In function 'XC_IsoCmd': xcIsoSurf.c:500:41: warning: 'ii' may be used uninitialized in this function [-Wmaybe-uninitialized] if ( argc == 3 && ( isodata.isolevel[ii] < isodata.min || ~~~~~~~~~~~~~~~~^~~~ gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c writeftn34.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c isoline.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcIsoSpaceSel.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c ftnunit.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c cells.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c savestruct.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c kPath.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c getintcoor.f xcBz.c: In function 'XC_BzCmd': xcBz.c:381:19: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] sprintf(tag, "sln%d", bz[typ].n_sline); ^~ xcBz.c:381:15: note: directive argument in the range [-2147483648, 2147483646] sprintf(tag, "sln%d", bz[typ].n_sline); ^~~~~~~ xcBz.c:381:2: note: 'sprintf' output between 5 and 15 bytes into a destination of size 10 sprintf(tag, "sln%d", bz[typ].n_sline); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xcBz.c:390:19: warning: '%d' directive writing between 1 and 10 bytes into a region of size 7 [-Wformat-overflow=] sprintf(tag, "spt%d", bz[typ].nselected); ^~ xcBz.c:390:15: note: directive argument in the range [0, 2147483646] sprintf(tag, "spt%d", bz[typ].nselected); ^~~~~~~ xcBz.c:390:2: note: 'sprintf' output between 5 and 14 bytes into a destination of size 10 sprintf(tag, "spt%d", bz[typ].nselected); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcWigner.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcTogl.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c pwKPath.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c datagrid.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c fhi_inpini2ftn34.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c fhi_coord2xcr.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c wn_readbands.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c wn_readbakgen.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c sInfo.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c pwi2xsf.f xcIsoSpaceSel.c: In function 'XC_IsoSpaceSelCmd': xcIsoSpaceSel.c:90:35: warning: 'cvec' may be used uninitialized in this function [-Wmaybe-uninitialized] double size = 1.0, rot = 0.0, (*cvec)[4]; ^~~~ xcIsoSurf.c: In function 'XC_IsodataCmd': xcIsoSurf.c:1797:7: warning: 'f31' may be used uninitialized in this function [-Wmaybe-uninitialized] for (j=f3; j<=f31; j++) ^~~ xcIsoSurf.c:1797:27: warning: 'f3' may be used uninitialized in this function [-Wmaybe-uninitialized] for (j=f3; j<=f31; j++) ~^~ gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcIsoDataGrid.c datagrid.c: In function 'WriteDataGrid': datagrid.c:391:6: warning: 'ind' may be used uninitialized in this function [-Wmaybe-uninitialized] if (ind) fprintf(fp, "\n"); ^ gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcColorScheme.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c latgen.f90 gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcReadXSF.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c pw_util.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcF3toI4.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c pwi2xsf_old.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c pwo_xsf2xsf.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcFractCoor.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c fsReadBXSF.f gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c cube2xsf.f gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c signal.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -c xsf2cube.f for prog in gengeom calplane atomlab recvec str2xcr fracCoor multislab savestruct ftnunit kPath pwKPath fhi_inpini2ftn34 fhi_coord2xcr wn_readbands wn_readbakgen pwi2xsf pwi2xsf_old pwo_xsf2xsf fsReadBXSF cube2xsf xsf2cube; do \ if test -x $prog.exe ; then cp $prog.exe ../bin ; \ elif test -x $prog ; then cp $prog ../bin ; fi; \ done gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c MarchCubes.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c isosurf.c xcFractCoor.c: In function 'XC_FractCoorCmd': xcFractCoor.c:82:3: warning: 'rvec' may be used uninitialized in this function [-Wmaybe-uninitialized] GetFractionalCoor(rvec, coor.vec, frcoor); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcMolSurf.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o gengeom gengeom.o multhexa.o multatom.o box.o ttcplane.o readf1.o auxil.o wigner.o wigner12d.o reduce.o convexhull.o p2c.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c cryNewContext.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o calplane calplane.o gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c fs.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c cryDispFunc.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o atomlab atomlab.o readXYZ.o readf1.o auxil.o gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o recvec recvec.o auxil.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c cryDispFuncMultiFS.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c crySetProj.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c crySurfArgs.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o str2xcr str2xcr.o auxil.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o fracCoor fracCoor.o auxil.o readf1.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o multislab multislab.o readf1.o auxil.o writeftn34.o gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o ftnunit ftnunit.o /usr/local/bin/ld: /usr/lib/libc.so/usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) : .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c crySurf.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o savestruct savestruct.o readf1.o auxil.o gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o kPath kPath.o getintcoor.o auxil.o readf1.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c cryTransform.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o pwKPath pwKPath.o auxil.o readf1.o gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o fhi_inpini2ftn34 fhi_inpini2ftn34.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c cryClip.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o fhi_coord2xcr fhi_coord2xcr.o gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o wn_readbands wn_readbands.o SRC_spaghetti/get_k.o SRC_spaghetti/get_ei.o xcMolSurf.c: In function 'MolSurfGrid': xcMolSurf.c:1081:32: warning: 'vP' may be used uninitialized in this function [-Wmaybe-uninitialized] x[0] = a*vP[0][0] + b*vP[1][0] + c*vP[2][0]; ~~~~~^~~ xcMolSurf.c:1023:14: warning: 'fcoor' may be used uninitialized in this function [-Wmaybe-uninitialized] double (*fcoor)[3], (*vP)[4], dii, djj, dkk; ^~~~~ xcMolSurf.c:1022:16: warning: 'atn' may be used uninitialized in this function [-Wmaybe-uninitialized] int size, *atn; ^~~ gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o wn_readbakgen wn_readbakgen.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c cryTogl.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c forces.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o pwi2xsf pwi2xsf.o latgen.o auxil.o pw_util.o gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o pwi2xsf_old pwi2xsf_old.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o pwo_xsf2xsf pwo_xsf2xsf.o latgen.o auxil.o pw_util.o gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o fsReadBXSF fsReadBXSF.o auxil.o wigner.o convexhull.o reduce.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcForces.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c gl2psPrintTogl.c gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o cube2xsf cube2xsf.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c ppmPrintTogl.c /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gfortran -fdefault-double-8 -fdefault-real-8 -O2 -o xsf2cube xsf2cube.o /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F' gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c lcasi.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c lcasif.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcFont.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c fog.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c writeXSF.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c hbonds.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcHBonds.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c linear.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c realTimeMovie.c xcFont.c: In function 'XC_QueryFontCb': xcFont.c:401:12: warning: 'thisFont' may be used uninitialized in this function [-Wmaybe-uninitialized] result = _assignFont(font_found, togl, argv[2], thisFont); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xcFont.c:401:12: warning: '*((void *)&thisFont+16)' may be used uninitialized in this function [-Wmaybe-uninitialized] xcFont.c:401:12: warning: '*((void *)&thisFont+24)' may be used uninitialized in this function [-Wmaybe-uninitialized] xcFont.c:401:12: warning: '*((void *)&thisFont+28)' may be used uninitialized in this function [-Wmaybe-uninitialized] In file included from hbonds.c:22: hbonds.c: In function 'make_H_Bonds': struct.h:60:68: warning: 'chemBondVec[2]' may be used uninitialized in this function [-Wmaybe-uninitialized] #define NORM_V3(v) ( sqrt( (v)[0]*(v)[0] + (v)[1]*(v)[1] + (v)[2]*(v)[2] ) ) ^ hbonds.c:62:27: note: 'chemBondVec[2]' was declared here double dis, len, angle, chemBondVec[3], HbondVec[3]; ^~~~~~~~~~~ In file included from hbonds.c:22: struct.h:60:52: warning: 'chemBondVec[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] #define NORM_V3(v) ( sqrt( (v)[0]*(v)[0] + (v)[1]*(v)[1] + (v)[2]*(v)[2] ) ) ^ hbonds.c:62:27: note: 'chemBondVec[1]' was declared here double dis, len, angle, chemBondVec[3], HbondVec[3]; ^~~~~~~~~~~ In file included from hbonds.c:22: struct.h:60:36: warning: 'chemBondVec[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] #define NORM_V3(v) ( sqrt( (v)[0]*(v)[0] + (v)[1]*(v)[1] + (v)[2]*(v)[2] ) ) ^ hbonds.c:62:27: note: 'chemBondVec[0]' was declared here double dis, len, angle, chemBondVec[3], HbondVec[3]; ^~~~~~~~~~~ xcFont.c: In function 'XC_SetAtomLabelCb': xcFont.c:247:14: warning: 'thisFont' may be used uninitialized in this function [-Wmaybe-uninitialized] result = _assignFont(0, togl, argv[4], thisFont); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xcFont.c:247:14: warning: '*((void *)&thisFont+16)' may be used uninitialized in this function [-Wmaybe-uninitialized] xcFont.c:247:14: warning: '*((void *)&thisFont+24)' may be used uninitialized in this function [-Wmaybe-uninitialized] xcFont.c:247:14: warning: '*((void *)&thisFont+28)' may be used uninitialized in this function [-Wmaybe-uninitialized] xcFont.c: In function 'XC_SetFontCb': xcFont.c:157:14: warning: 'thisFont' may be used uninitialized in this function [-Wmaybe-uninitialized] result = _assignFont(font_found, togl, argv[2], thisFont); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ xcFont.c:157:14: warning: '*((void *)&thisFont+16)' may be used uninitialized in this function [-Wmaybe-uninitialized] xcFont.c:157:14: warning: '*((void *)&thisFont+24)' may be used uninitialized in this function [-Wmaybe-uninitialized] xcFont.c:157:14: warning: '*((void *)&thisFont+28)' may be used uninitialized in this function [-Wmaybe-uninitialized] gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c getline.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c gridNormals.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c fft3d.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c fft_util.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c shank3d.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c shank_Hinv.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c shank_util.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c gl2ps.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c sgiRasterFont.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c sgiAux.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xcTclsh.c gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -isystem /usr/local/include -I/usr/local/include -I/usr/local/include/tcl8.6 -I/usr/local/include/tk8.6 -I/usr/local/include -c xsf2xsf.c cp xcrys ../bin cp: xcrys: No such file or directory make[4]: [Makefile:42: install] Error 1 (ignored) cp xctclsh ../bin cp: xctclsh: No such file or directory make[4]: [Makefile:43: install] Error 1 (ignored) cp xsf2xsf ../bin cp: xsf2xsf: No such file or directory make[4]: [Makefile:44: install] Error 1 (ignored) gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT xcTclsh.o -o xctclsh -L/usr/local/lib -ltcl86 -lm -lc gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT xsf2xsf.o -o xsf2xsf -lm -lc gl2ps.c: In function 'gl2psPrintPrimitives': gl2ps.c:2337:11: warning: 'ounits' may be used uninitialized in this function [-Wmaybe-uninitialized] gl2psAddPolyPrimitive(GL2PS_TRIANGLE, 3, vertices, offset, ofactor, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ounits, pattern, factor, 1, lcap, ljoin, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ flag); ~~~~~ gl2ps.c:2280:49: note: 'ounits' was declared here GLfloat lwidth = 1.0F, psize = 1.0F, ofactor, ounits; ^~~~~~ gl2ps.c:2337:11: warning: 'ofactor' may be used uninitialized in this function [-Wmaybe-uninitialized] gl2psAddPolyPrimitive(GL2PS_TRIANGLE, 3, vertices, offset, ofactor, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ounits, pattern, factor, 1, lcap, ljoin, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ flag); ~~~~~ gl2ps.c:2280:40: note: 'ofactor' was declared here GLfloat lwidth = 1.0F, psize = 1.0F, ofactor, ounits; ^~~~~~~ gcc -g -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT -ffast-math -funroll-loops -fPIC -DUSE_FONTS -pedantic -Wall -DUSE_INTERP_RESULT detnsplit.o xcAppInit.o xcballstick.o xcviewport.o xcLabels.o vectors.o xcDisplayFunc2.o xcAtomAdd.o loadValues.o hpsort.o auxilproc.o xcdebug.o 3D.o xcDisplayFunc.o readstrf.o mxmymz.o remakestr.o xcSelect.o readisodata.o lighting.o xcGLparam.o colorplane.o isorender.o polygonise.o polygonise_auxil.o xcIsoSurf.o voronoi.o xcBz.o xcSuperCell.o xcPrimitives.o setOpenGLState.o memory.o isoMalloc.o isoInterpolate.o readPlvertex.o splineInt.o paraSize.o isoline.o xcIsoSpaceSel.o cells.o xcWigner.o xcTogl.o datagrid.o sInfo.o xcIsoDataGrid.o xcColorScheme.o xcReadXSF.o xcF3toI4.o xcFractCoor.o signal.o MarchCubes.o isosurf.o xcMolSurf.o cryNewContext.o fs.o cryDispFunc.o cryDispFuncMultiFS.o crySetProj.o crySurfArgs.o crySurf.o cryTransform.o cryClip.o cryTogl.o forces.o xcForces.o gl2psPrintTogl.o ppmPrintTogl.o lcasi.o lcasif.o xcFont.o fog.o writeXSF.o hbonds.o xcHBonds.o linear.o realTimeMovie.o getline.o gridNormals.o fft3d.o fft_util.o shank3d.o shank_Hinv.o shank_util.o gl2ps.o sgiRasterFont.o sgiAux.o \ -o xcrys -L/usr/local/lib -lfftw3 -L/usr/local/lib -ltk86 -L/usr/local/lib -ltcl86 -L/usr/local/lib -lGLU -L/usr/local/lib -lGL -lXmu -lX11 -lm -lc -L/usr/local/lib -lgl2ps -L/usr/local/lib/Togl2.0 -lTogl2.0 make[4]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/C' gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/C' gmake[2]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2' SUCCEEDED 00:00:23 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> xcrysden-1.6.2 depends on package: bwidget>0 - found ===> xcrysden-1.6.2 depends on executable: obabel - found ===> xcrysden-1.6.2 depends on executable: convert - found ===> xcrysden-1.6.2 depends on executable: ppmtompeg - found ===> xcrysden-1.6.2 depends on executable: xwd - found ===> xcrysden-1.6.2 depends on executable: gfortran8 - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for xcrysden-1.6.2 ===> xcrysden-1.6.2 depends on package: bwidget>0 - found ===> xcrysden-1.6.2 depends on executable: obabel - found ===> xcrysden-1.6.2 depends on executable: convert - found ===> xcrysden-1.6.2 depends on executable: ppmtompeg - found ===> xcrysden-1.6.2 depends on executable: xwd - found ===> xcrysden-1.6.2 depends on executable: gfortran8 - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> xcrysden-1.6.2 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> Generating temporary packing list gmake[2]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2' if test -d external/src ; then \ cd external/src; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" bwidget; \ fi if test ! -d bin ; then mkdir bin; fi #------------------------------# # # # Compiling XCRYSDEN C-code # # # #------------------------------# cd C; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" compile gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/C' make TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2 make[4]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/C' cp xcrys ../bin cp xctclsh ../bin cp xsf2xsf ../bin make[4]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/C' gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/C' #------------------------------# # # # Compiling XCRYSDEN F-code # # # #------------------------------# cd F/SRC_nn; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_nn' if test -f nn.exe ; then cp nn.exe ../../bin ; \ elif test -f nn ; then cp nn ../../bin ; fi gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_nn' cd F/SRC_spaghetti; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' gmake[3]: Nothing to be done for 'default'. gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' cd F; gmake "TOPDIR=/construction/science/xcrysden/xcrysden-1.6.2" gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F' cd SRC_spaghetti; make make[4]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' make[4]: Nothing to be done for 'default'. make[4]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F/SRC_spaghetti' for prog in gengeom calplane atomlab recvec str2xcr fracCoor multislab savestruct ftnunit kPath pwKPath fhi_inpini2ftn34 fhi_coord2xcr wn_readbands wn_readbakgen pwi2xsf pwi2xsf_old pwo_xsf2xsf fsReadBXSF cube2xsf xsf2cube; do \ if test -x $prog.exe ; then cp $prog.exe ../bin ; \ elif test -x $prog ; then cp $prog ../bin ; fi; \ done gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/F' #------------------------------# # # # Managing XCRYSDEN Tcl-code # # # #------------------------------# cd Tcl; gmake gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl' gmake[3]: 'tclIndex' is up to date. gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl' cd Tcl/fs; gmake gmake[3]: Entering directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl/fs' gmake[3]: 'tclIndex' is up to date. gmake[3]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2/Tcl/fs' #----- # # Installing XCRYSDEN to: /construction/science/xcrysden/stage/usr/local # #----- install -m755 -d /construction/science/xcrysden/stage/usr/local/share/xcrysden cp -a usage version xcrysden /construction/science/xcrysden/stage/usr/local/share/xcrysden \ for subdir in Awk external/lib/bwidget-1.9.13 images scripts Tcl util; do \ if test -d $subdir; then \ install -m755 -d /construction/science/xcrysden/stage/usr/local/share/xcrysden/$subdir; \ cp -a $subdir/* /construction/science/xcrysden/stage/usr/local/share/xcrysden/$subdir; \ fi; \ done \ if test -d examples; then \ install -m755 -d /construction/science/xcrysden/stage/usr/local/share/doc/xcrysden/examples; \ cp -a examples/* /construction/science/xcrysden/stage/usr/local/share/doc/xcrysden/examples; \ ln -sf /construction/science/xcrysden/stage/usr/local/share/doc/xcrysden/examples /construction/science/xcrysden/stage/usr/local/share/xcrysden/examples; \ fi; \ \ install -m755 -d /construction/science/xcrysden/stage/usr/local/share/man/man1 install -m644 docs/xcrysden.1 docs/pwi2xsf.1 docs/pwo2xsf.1 docs/ptable.1 docs/unitconv.1 /construction/science/xcrysden/stage/usr/local/share/man/man1/ gzip -f /construction/science/xcrysden/stage/usr/local/share/man/man1/xcrysden.1 /construction/science/xcrysden/stage/usr/local/share/man/man1/pwi2xsf.1 /construction/science/xcrysden/stage/usr/local/share/man/man1/pwo2xsf.1 /construction/science/xcrysden/stage/usr/local/share/man/man1/ptable.1 /construction/science/xcrysden/stage/usr/local/share/man/man1/unitconv.1 \ install -m755 -d /construction/science/xcrysden/stage/usr/local/lib/xcrysden install -m755 bin/* /construction/science/xcrysden/stage/usr/local/lib/xcrysden/ \ prefix=/construction/science/xcrysden/stage/usr/local xcrysden=xcrysden sh sys_utils/wrappers.sh if test ! -d /construction/science/xcrysden/stage/usr/local/bin; then install -m755 -d /construction/science/xcrysden/stage/usr/local/bin; fi for prog in xcrysden pwi2xsf pwo2xsf ptable unitconv; do \ install -m755 $prog.wrapper /construction/science/xcrysden/stage/usr/local/bin/$prog; \ done gmake[2]: Leaving directory '/construction/science/xcrysden/xcrysden-1.6.2' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/xcrysden/xcrys is linked to /usr/local/lib/Togl2.0/libTogl2.0.so which does not have a SONAME. graphics/togl needs to be fixed. Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for xcrysden-1.6.2 file sizes/checksums [413]: 0% file sizes/checksums [413]: 24% file sizes/checksums [413]: 48% file sizes/checksums [413]: 72% file sizes/checksums [413]: 96% file sizes/checksums [413]: 100% packing files [413]: 0% packing files [413]: 24% packing files [413]: 48% packing files [413]: 72% packing files [413]: 96% packing files [413]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:09 TOTAL TIME 00:03:23