------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/ncurses-6.2.20200831.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18_1.txz ===== Message from python27-2.7.18_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pytest-runner-2.11.1.txz ===== Message from py27-pytest-runner-2.11.1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_3,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.10,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/py27-numpy-1.16.6,1.txz ===== Message from py27-numpy-1.16.6,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/bash-5.0.18_3.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:35 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-moltemplate-2.18.3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-moltemplate-2.18.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-moltemplate-2.18.3 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-moltemplate-2.18.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-moltemplate-2.18.3 for building => SHA256 Checksum OK for moltemplate-2.18.3.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-moltemplate-2.18.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-moltemplate-2.18.3 for building ===> Extracting for py27-moltemplate-2.18.3 => SHA256 Checksum OK for moltemplate-2.18.3.tar.gz. Extracted Memory Use: 1.55M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-moltemplate-2.18.3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-moltemplate-2.18.3 depends on package: py27-pytest-runner>0 - found ===> py27-moltemplate-2.18.3 depends on package: py27-setuptools>0 - found ===> py27-moltemplate-2.18.3 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-moltemplate-2.18.3 depends on package: py27-pytest-runner>0 - found ===> py27-moltemplate-2.18.3 depends on package: py27-setuptools>0 - found ===> py27-moltemplate-2.18.3 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-moltemplate-2.18.3 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-moltemplate-2.18.3 running build running build_py creating build creating build/lib creating build/lib/moltemplate copying moltemplate/nbody_by_type_lib.py -> build/lib/moltemplate copying moltemplate/bonds_by_type.py -> build/lib/moltemplate copying moltemplate/lttree.py -> build/lib/moltemplate copying moltemplate/ttree_lex.py -> build/lib/moltemplate copying moltemplate/remove_duplicates_nbody.py -> build/lib/moltemplate copying moltemplate/ordereddict.py -> build/lib/moltemplate copying moltemplate/nbody_by_type.py -> build/lib/moltemplate copying moltemplate/ttree_matrix_stack.py -> build/lib/moltemplate copying moltemplate/lttree_postprocess.py -> build/lib/moltemplate copying moltemplate/postprocess_input_script.py -> build/lib/moltemplate copying moltemplate/ltemplify.py -> build/lib/moltemplate copying moltemplate/charge_by_bond.py -> build/lib/moltemplate copying moltemplate/ettree_styles.py -> build/lib/moltemplate copying moltemplate/nbody_graph_search.py -> build/lib/moltemplate copying moltemplate/postprocess_coeffs.py -> build/lib/moltemplate copying moltemplate/lttree_check.py -> build/lib/moltemplate copying moltemplate/genpoly_lt.py -> build/lib/moltemplate copying moltemplate/dump2data.py -> build/lib/moltemplate copying moltemplate/ettree.py -> build/lib/moltemplate copying moltemplate/nbody_Bonds.py -> build/lib/moltemplate copying moltemplate/nbody_Impropers.py -> build/lib/moltemplate copying moltemplate/nbody_Dihedrals.py -> build/lib/moltemplate copying moltemplate/interpolate_curve.py -> build/lib/moltemplate copying moltemplate/pdbsort.py -> build/lib/moltemplate copying moltemplate/recenter_coords.py -> build/lib/moltemplate copying moltemplate/__init__.py -> build/lib/moltemplate copying moltemplate/lttree_styles.py -> build/lib/moltemplate copying moltemplate/nbody_fix_ttree_assignments.py -> build/lib/moltemplate copying moltemplate/ttree.py -> build/lib/moltemplate copying moltemplate/nbody_reorder_atoms.py -> build/lib/moltemplate copying moltemplate/ttree_render.py -> build/lib/moltemplate copying moltemplate/raw2data.py -> build/lib/moltemplate copying moltemplate/renumber_DATA_first_column.py -> build/lib/moltemplate copying moltemplate/extract_espresso_atom_types.py -> build/lib/moltemplate copying moltemplate/genpoly_modify_lt.py -> build/lib/moltemplate copying moltemplate/nbody_Angles.py -> build/lib/moltemplate copying moltemplate/remove_duplicate_atoms.py -> build/lib/moltemplate copying moltemplate/extract_lammps_data.py -> build/lib/moltemplate creating build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenIswapJK.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/bonds_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/opls_imp.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenJswapIL.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/dihedrals_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenIsortJKL.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/gaff_imp.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/angles_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/__init__.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/impropers_nosym.py -> build/lib/moltemplate/nbody_alt_symmetry copying moltemplate/nbody_alt_symmetry/cenJsortIKL.py -> build/lib/moltemplate/nbody_alt_symmetry running egg_info writing requirements to moltemplate.egg-info/requires.txt writing moltemplate.egg-info/PKG-INFO writing top-level names to moltemplate.egg-info/top_level.txt writing dependency_links to moltemplate.egg-info/dependency_links.txt writing entry points to moltemplate.egg-info/entry_points.txt reading manifest file 'moltemplate.egg-info/SOURCES.txt' writing manifest file 'moltemplate.egg-info/SOURCES.txt' creating build/lib/moltemplate/scripts copying moltemplate/scripts/cleanup_moltemplate.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/emoltemplate.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/molc.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/moltemplate.sh -> build/lib/moltemplate/scripts copying moltemplate/scripts/pdb2crds.awk -> build/lib/moltemplate/scripts running build_scripts creating build/scripts-2.7 copying moltemplate/scripts/moltemplate.sh -> build/scripts-2.7 copying moltemplate/scripts/cleanup_moltemplate.sh -> build/scripts-2.7 copying moltemplate/scripts/molc.sh -> build/scripts-2.7 copying moltemplate/scripts/pdb2crds.awk -> build/scripts-2.7 copying moltemplate/scripts/emoltemplate.sh -> build/scripts-2.7 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-moltemplate-2.18.3 depends on package: py27-numpy>=1.16,1<1.20,1 - found ===> py27-moltemplate-2.18.3 depends on executable: bash - found ===> py27-moltemplate-2.18.3 depends on package: py27-setuptools>0 - found ===> py27-moltemplate-2.18.3 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-moltemplate-2.18.3 ===> py27-moltemplate-2.18.3 depends on package: py27-numpy>=1.16,1<1.20,1 - found ===> py27-moltemplate-2.18.3 depends on executable: bash - found ===> py27-moltemplate-2.18.3 depends on package: py27-setuptools>0 - found ===> py27-moltemplate-2.18.3 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py running egg_info writing requirements to moltemplate.egg-info/requires.txt writing moltemplate.egg-info/PKG-INFO writing top-level names to moltemplate.egg-info/top_level.txt writing dependency_links to moltemplate.egg-info/dependency_links.txt writing entry points to moltemplate.egg-info/entry_points.txt reading manifest file 'moltemplate.egg-info/SOURCES.txt' writing manifest file 'moltemplate.egg-info/SOURCES.txt' running build_scripts running install_lib creating /construction/science/py-moltemplate/stage/usr/local/lib/python2.7 creating /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/lttree.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/dump2data.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ordereddict.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/pdbsort.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate creating /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/moltemplate.sh -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/emoltemplate.sh -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/cleanup_moltemplate.sh -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/molc.sh -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/scripts copying build/lib/moltemplate/scripts/pdb2crds.awk -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/scripts copying build/lib/moltemplate/extract_espresso_atom_types.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/genpoly_modify_lt.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ttree_matrix_stack.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_Impropers.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/lttree_styles.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_graph_search.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/lttree_postprocess.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_fix_ttree_assignments.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/renumber_DATA_first_column.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate creating /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenJswapIL.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/opls_imp.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/angles_nosym.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/impropers_nosym.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenIsortJKL.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenJsortIKL.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/gaff_imp.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/__init__.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/bonds_nosym.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/dihedrals_nosym.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_alt_symmetry/cenIswapJK.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry copying build/lib/moltemplate/nbody_by_type.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/remove_duplicate_atoms.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/bonds_by_type.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_reorder_atoms.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/remove_duplicates_nbody.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/__init__.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/lttree_check.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_Angles.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_by_type_lib.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ettree_styles.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/postprocess_coeffs.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/extract_lammps_data.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/postprocess_input_script.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ttree_lex.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/raw2data.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ettree.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ttree.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_Dihedrals.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/genpoly_lt.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/nbody_Bonds.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ltemplify.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/recenter_coords.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/charge_by_bond.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/ttree_render.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate copying build/lib/moltemplate/interpolate_curve.py -> /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/lttree.py to lttree.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/dump2data.py to dump2data.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ordereddict.py to ordereddict.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/pdbsort.py to pdbsort.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/extract_espresso_atom_types.py to extract_espresso_atom_types.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/genpoly_modify_lt.py to genpoly_modify_lt.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ttree_matrix_stack.py to ttree_matrix_stack.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_Impropers.py to nbody_Impropers.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/lttree_styles.py to lttree_styles.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_graph_search.py to nbody_graph_search.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/lttree_postprocess.py to lttree_postprocess.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_fix_ttree_assignments.py to nbody_fix_ttree_assignments.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/renumber_DATA_first_column.py to renumber_DATA_first_column.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/cenJswapIL.py to cenJswapIL.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/opls_imp.py to opls_imp.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/angles_nosym.py to angles_nosym.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/impropers_nosym.py to impropers_nosym.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/cenIsortJKL.py to cenIsortJKL.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/cenJsortIKL.py to cenJsortIKL.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/gaff_imp.py to gaff_imp.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/__init__.py to __init__.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/bonds_nosym.py to bonds_nosym.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/dihedrals_nosym.py to dihedrals_nosym.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_alt_symmetry/cenIswapJK.py to cenIswapJK.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_by_type.py to nbody_by_type.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/remove_duplicate_atoms.py to remove_duplicate_atoms.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/bonds_by_type.py to bonds_by_type.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_reorder_atoms.py to nbody_reorder_atoms.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/remove_duplicates_nbody.py to remove_duplicates_nbody.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/__init__.py to __init__.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/lttree_check.py to lttree_check.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_Angles.py to nbody_Angles.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_by_type_lib.py to nbody_by_type_lib.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ettree_styles.py to ettree_styles.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/postprocess_coeffs.py to postprocess_coeffs.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/extract_lammps_data.py to extract_lammps_data.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/postprocess_input_script.py to postprocess_input_script.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ttree_lex.py to ttree_lex.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/raw2data.py to raw2data.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ettree.py to ettree.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ttree.py to ttree.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_Dihedrals.py to nbody_Dihedrals.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/genpoly_lt.py to genpoly_lt.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/nbody_Bonds.py to nbody_Bonds.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ltemplify.py to ltemplify.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/recenter_coords.py to recenter_coords.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/charge_by_bond.py to charge_by_bond.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/ttree_render.py to ttree_render.pyc byte-compiling /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate/interpolate_curve.py to interpolate_curve.pyc writing byte-compilation script '/tmp/tmp4flluK.py' /usr/local/bin/python2.7 -O /tmp/tmp4flluK.py removing /tmp/tmp4flluK.py running install_egg_info Copying moltemplate.egg-info to /construction/science/py-moltemplate/stage/usr/local/lib/python2.7/site-packages/moltemplate-2.18.3-py2.7.egg-info running install_scripts copying build/scripts-2.7/moltemplate.sh -> /construction/science/py-moltemplate/stage/usr/local/bin copying build/scripts-2.7/pdb2crds.awk -> /construction/science/py-moltemplate/stage/usr/local/bin copying build/scripts-2.7/emoltemplate.sh -> /construction/science/py-moltemplate/stage/usr/local/bin copying build/scripts-2.7/cleanup_moltemplate.sh -> /construction/science/py-moltemplate/stage/usr/local/bin copying build/scripts-2.7/molc.sh -> /construction/science/py-moltemplate/stage/usr/local/bin changing mode of /construction/science/py-moltemplate/stage/usr/local/bin/moltemplate.sh to 755 changing mode of /construction/science/py-moltemplate/stage/usr/local/bin/pdb2crds.awk to 755 changing mode of /construction/science/py-moltemplate/stage/usr/local/bin/emoltemplate.sh to 755 changing mode of /construction/science/py-moltemplate/stage/usr/local/bin/cleanup_moltemplate.sh to 755 changing mode of /construction/science/py-moltemplate/stage/usr/local/bin/molc.sh to 755 Installing extract_espresso_atom_types.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing extract_lammps_data.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing ttree_render.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing remove_duplicate_atoms.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing postprocess_coeffs.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing pdbsort.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing postprocess_input_script.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing nbody_by_type.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing raw2data.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing ltemplify.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing recenter_coords.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing genpoly_lt.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing lttree.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing lttree_postprocess.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing charge_by_bond.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing genpoly_modify_lt.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing ettree.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing interpolate_curve.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing bonds_by_type.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing dump2data.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing ttree.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing renumber_DATA_first_column.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing nbody_fix_ttree_assignments.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing remove_duplicates_nbody.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing nbody_reorder_atoms.py script to /construction/science/py-moltemplate/stage/usr/local/bin Installing lttree_check.py script to /construction/science/py-moltemplate/stage/usr/local/bin writing list of installed files to '/construction/science/py-moltemplate/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/moltemplate.sh --> bin/moltemplate.sh-2.7 Move: bin/pdb2crds.awk --> bin/pdb2crds.awk-2.7 Move: bin/emoltemplate.sh --> bin/emoltemplate.sh-2.7 Move: bin/cleanup_moltemplate.sh --> bin/cleanup_moltemplate.sh-2.7 Move: bin/molc.sh --> bin/molc.sh-2.7 Move: bin/extract_espresso_atom_types.py --> bin/extract_espresso_atom_types.py-2.7 Move: bin/extract_lammps_data.py --> bin/extract_lammps_data.py-2.7 Move: bin/ttree_render.py --> bin/ttree_render.py-2.7 Move: bin/remove_duplicate_atoms.py --> bin/remove_duplicate_atoms.py-2.7 Move: bin/postprocess_coeffs.py --> bin/postprocess_coeffs.py-2.7 Move: bin/pdbsort.py --> bin/pdbsort.py-2.7 Move: bin/postprocess_input_script.py --> bin/postprocess_input_script.py-2.7 Move: bin/nbody_by_type.py --> bin/nbody_by_type.py-2.7 Move: bin/raw2data.py --> bin/raw2data.py-2.7 Move: bin/ltemplify.py --> bin/ltemplify.py-2.7 Move: bin/recenter_coords.py --> bin/recenter_coords.py-2.7 Move: bin/genpoly_lt.py --> bin/genpoly_lt.py-2.7 Move: bin/lttree.py --> bin/lttree.py-2.7 Move: bin/lttree_postprocess.py --> bin/lttree_postprocess.py-2.7 Move: bin/charge_by_bond.py --> bin/charge_by_bond.py-2.7 Move: bin/genpoly_modify_lt.py --> bin/genpoly_modify_lt.py-2.7 Move: bin/ettree.py --> bin/ettree.py-2.7 Move: bin/interpolate_curve.py --> bin/interpolate_curve.py-2.7 Move: bin/bonds_by_type.py --> bin/bonds_by_type.py-2.7 Move: bin/dump2data.py --> bin/dump2data.py-2.7 Move: bin/ttree.py --> bin/ttree.py-2.7 Move: bin/renumber_DATA_first_column.py --> bin/renumber_DATA_first_column.py-2.7 Move: bin/nbody_fix_ttree_assignments.py --> bin/nbody_fix_ttree_assignments.py-2.7 Move: bin/remove_duplicates_nbody.py --> bin/remove_duplicates_nbody.py-2.7 Move: bin/nbody_reorder_atoms.py --> bin/nbody_reorder_atoms.py-2.7 Move: bin/lttree_check.py --> bin/lttree_check.py-2.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-moltemplate-2.18.3 file sizes/checksums [190]: 0% file sizes/checksums [190]: 52% file sizes/checksums [190]: 100% packing files [190]: 0% packing files [190]: 52% packing files [190]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:03 TOTAL TIME 00:00:44