------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> pear-merger-0.9.6 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> pear-merger-0.9.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by pear-merger-0.9.6 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> pear-merger-0.9.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by pear-merger-0.9.6 for building => SHA256 Checksum OK for pear_0.9.6_src_all.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> pear-merger-0.9.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by pear-merger-0.9.6 for building ===> Extracting for pear-merger-0.9.6 => SHA256 Checksum OK for pear_0.9.6_src_all.tar.gz. Extracted Memory Use: 1.60M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for pear-merger-0.9.6 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> Configuring for pear-merger-0.9.6 configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes test: -pipe: unexpected operator checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking for log in -lm... yes checking for main in -lpthread... yes checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for inline... inline checking for size_t... (cached) yes checking for uint32_t... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for working strtod... (cached) yes checking for memmove... (cached) yes checking for pow... yes checking for strtol... (cached) yes checking for library containing pthread_create... none required checking for library containing BZ2_bzCompress... -lbz2 checking for library containing zlibVersion... -lz checking for pthread.h... (cached) yes checking bzlib.h usability... yes checking bzlib.h presence... yes checking for bzlib.h... yes checking for zlib.h... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating src/config.h config.status: executing depfiles commands SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for pear-merger-0.9.6 --- all-recursive --- Making all in src --- all --- /usr/bin/make all-am --- pear-args.o --- --- pear-pear-pt.o --- --- pear-reader.o --- --- pear-statistics.o --- --- pear-args.o --- cc -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -funroll-loops -Wall -Wredundant-decls -Wreturn-type -Wswitch-default -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -pipe -O2 -fno-strict-aliasing -MT pear-args.o -MD -MP -MF .deps/pear-args.Tpo -c -o pear-args.o `test -f 'args.c' || echo './'`args.c --- pear-statistics.o --- cc -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -funroll-loops -Wall -Wredundant-decls -Wreturn-type -Wswitch-default -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -pipe -O2 -fno-strict-aliasing -MT pear-statistics.o -MD -MP -MF .deps/pear-statistics.Tpo -c -o pear-statistics.o `test -f 'statistics.c' || echo './'`statistics.c --- pear-pear-pt.o --- cc -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -funroll-loops -Wall -Wredundant-decls -Wreturn-type -Wswitch-default -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -pipe -O2 -fno-strict-aliasing -MT pear-pear-pt.o -MD -MP -MF .deps/pear-pear-pt.Tpo -c -o pear-pear-pt.o `test -f 'pear-pt.c' || echo './'`pear-pt.c --- pear-reader.o --- cc -DHAVE_CONFIG_H -I. -O3 -fomit-frame-pointer -funroll-loops -Wall -Wredundant-decls -Wreturn-type -Wswitch-default -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -pipe -O2 -fno-strict-aliasing -MT pear-reader.o -MD -MP -MF .deps/pear-reader.Tpo -c -o pear-reader.o `test -f 'reader.c' || echo './'`reader.c reader.c: In function 'print_number': reader.c:190:3: warning: 'y[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("%d", y[0]); ^~~~~~~~~~~~~~~~~~~ --- pear-args.o --- mv -f .deps/pear-args.Tpo .deps/pear-args.Po --- pear-reader.o --- mv -f .deps/pear-reader.Tpo .deps/pear-reader.Po --- pear-statistics.o --- mv -f .deps/pear-statistics.Tpo .deps/pear-statistics.Po --- pear-pear-pt.o --- mv -f .deps/pear-pear-pt.Tpo .deps/pear-pear-pt.Po --- pear --- cc -O3 -fomit-frame-pointer -funroll-loops -Wall -Wredundant-decls -Wreturn-type -Wswitch-default -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -pipe -O2 -fno-strict-aliasing -o pear pear-pear-pt.o pear-args.o pear-statistics.o pear-reader.o -lz -lbz2 -lpthread -lm Making all in man SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for pear-merger-0.9.6 ===> Generating temporary packing list install -s -m 555 /construction/biology/pear-merger/pear-0.9.6-src/src/pear /construction/biology/pear-merger/stage/usr/local/bin/pearRM install -m 444 /construction/biology/pear-merger/pear-0.9.6-src/man/pearRM.1 /construction/biology/pear-merger/stage/usr/local/man/man1 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for pear-merger-0.9.6 file sizes/checksums [2]: 0% file sizes/checksums [2]: 100% packing files [2]: 0% packing files [2]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:11