------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/libnghttp2-1.41.0.txz Installing /packages/All/ca_root_nss-3.58.txz ===== Message from ca_root_nss-3.58: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/openssl-1.1.1h_1,1.txz Installing /packages/All/curl-7.73.0.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libuv-1.40.0.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/rhash-1.3.9.txz Installing /packages/All/liblz4-1.9.2_1,1.txz Installing /packages/All/lzo2-2.10_1.txz Installing /packages/All/libarchive-3.4.3,1.txz Installing /packages/All/ncurses-6.2.20201017.txz Installing /packages/All/cmake-3.18.4.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.14_1.txz Installing /packages/All/libX11-1.6.12,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.5.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/libxml2-2.9.10_1.txz Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/zstd-1.4.5_1.txz Installing /packages/All/pciids-20200922.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libunwind-20200331_1.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/mesa-libs-20.2.0_1.txz Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/freeglut-3.0.0_2.txz ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. SUCCEEDED 00:00:24 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> smoldyn-2.62 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> smoldyn-2.62 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by smoldyn-2.62 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> smoldyn-2.62 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by smoldyn-2.62 for building => SHA256 Checksum OK for smoldyn-2.62.tgz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> smoldyn-2.62 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by smoldyn-2.62 for building ===> Extracting for smoldyn-2.62 => SHA256 Checksum OK for smoldyn-2.62.tgz. Extracted Memory Use: 50.32M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for smoldyn-2.62 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> smoldyn-2.62 depends on file: /usr/local/bin/cmake - found ===> smoldyn-2.62 depends on package: xorgproto>=0 - found ===> smoldyn-2.62 depends on package: xorgproto>=0 - found ===> smoldyn-2.62 depends on file: /usr/local/libdata/pkgconfig/xi.pc - found ===> smoldyn-2.62 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> smoldyn-2.62 depends on shared library: libtiff.so - found (/usr/local/lib/libtiff.so) ===> smoldyn-2.62 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> smoldyn-2.62 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> smoldyn-2.62 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> smoldyn-2.62 depends on file: /usr/local/bin/cmake - found ===> smoldyn-2.62 depends on package: xorgproto>=0 - found ===> smoldyn-2.62 depends on package: xorgproto>=0 - found ===> smoldyn-2.62 depends on file: /usr/local/libdata/pkgconfig/xi.pc - found ===> smoldyn-2.62 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> smoldyn-2.62 depends on shared library: libtiff.so - found (/usr/local/lib/libtiff.so) ===> smoldyn-2.62 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> smoldyn-2.62 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> smoldyn-2.62 depends on shared library: libglut.so - found (/usr/local/lib/libglut.so) ===> Configuring for smoldyn-2.62 ===> Performing out-of-source build /bin/mkdir -p /construction/science/smoldyn/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Smoldyn version set to: '2.62.dev' -- Compiling for Smoldyn: ON -- Compiling for Libsmoldyn: ON -- Option to compile Smoldyn for VCell: OFF -- Option to cross-compile for Windows using MinGW: OFF -- Option to include NextSubvolume: ON -- Option to include VTK: OFF -- Option to compile with static libraries: OFF -- Option to include OpenGL support: ON -- Option to include LibTiff: ON -- Option to incude Python module: ON -- Option to run Libsmoldyn examples: OFF -- Build type: Release -- Compiling on a Linux computer -- CMAKE_CXX_FLAGS variable: ' -pipe -O2 -fno-strict-aliasing' -- BioNetGen path: '/usr/local/bin/BioNetGen/BNG2.pl' -- Found OpenGL: /usr/local/lib/libGL.so -- OpenGL found: '/usr/local/include', '/usr/local/lib/libGL.so;/usr/local/lib/libGLU.so' -- Found GLUT: /usr/local/lib/libglut.so -- Glut found: '/usr/local/include', '/usr/local/lib/libglut.so;/usr/local/lib/libXmu.so;/usr/local/lib/libXi.so' -- Found TIFF: /usr/local/lib/libtiff.so (found version "4.1.0") -- Found Libtiff: '/usr/local/include', '/usr/local/lib/libtiff.so' -- Boost headers found: '/construction/science/smoldyn/smoldyn-2.62/source/NextSubVolume/boost_include' -- NSV added to source files CMake Error at /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:165 (message): Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) Call Stack (most recent call first): /usr/local/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:458 (_FPHSA_FAILURE_MESSAGE) /usr/local/share/cmake/Modules/FindPythonInterp.cmake:169 (FIND_PACKAGE_HANDLE_STANDARD_ARGS) source/pybind11/tools/FindPythonLibsNew.cmake:60 (find_package) source/pybind11/tools/pybind11Tools.cmake:16 (find_package) source/pybind11/CMakeLists.txt:33 (include) -- Configuring incomplete, errors occurred! See also "/construction/science/smoldyn/.build/CMakeFiles/CMakeOutput.log". *** Error code 1 Stop. make: stopped in /xports/science/smoldyn FAILED 00:00:02