------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.1.0.txz Installing /packages/All/metis-5.1.0_8.txz ===== Message from metis-5.1.0_8: -- ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/tbb-2020.3.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.21.txz Installing /packages/All/binutils-2.33.1_3,1.txz ===== Message from binutils-2.33.1_3,1: -- ===> NOTICE: The binutils port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.10,1.txz Installing /packages/All/suitesparse-5.8.1.txz Installing /packages/All/libffi-3.3_1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.2.20201017.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1h_1,1.txz Installing /packages/All/python37-3.7.9_1.txz ===== Message from python37-3.7.9_1: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.6,1.txz Installing /packages/All/py37-nose-1.3.7_1.txz Installing /packages/All/py37-cython-0.29.21.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:28 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-hdmedians-0.14 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-hdmedians-0.14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-hdmedians-0.14 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-hdmedians-0.14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-hdmedians-0.14 for building => SHA256 Checksum OK for hdmedians-0.14.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-hdmedians-0.14 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-hdmedians-0.14 for building ===> Extracting for py37-hdmedians-0.14 => SHA256 Checksum OK for hdmedians-0.14.tar.gz. Extracted Memory Use: 0.07M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-hdmedians-0.14 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-hdmedians-0.14 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-hdmedians-0.14 depends on package: py37-nose>0 - found ===> py37-hdmedians-0.14 depends on executable: cython-3.7 - found ===> py37-hdmedians-0.14 depends on package: py37-setuptools>0 - found ===> py37-hdmedians-0.14 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-hdmedians-0.14 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-hdmedians-0.14 depends on package: py37-nose>0 - found ===> py37-hdmedians-0.14 depends on executable: cython-3.7 - found ===> py37-hdmedians-0.14 depends on package: py37-setuptools>0 - found ===> py37-hdmedians-0.14 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-hdmedians-0.14 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-hdmedians-0.14 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/hdmedians copying hdmedians/medoid.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdmedians copying hdmedians/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdmedians creating build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/tests copying hdmedians/tests/test_medoid.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/tests copying hdmedians/tests/test_geomedian.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/tests copying hdmedians/tests/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/tests running build_ext cythoning hdmedians/geomedian.pyx to hdmedians/geomedian.c /usr/local/lib/python3.7/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /construction/math/py-hdmedians/hdmedians-0.14/hdmedians/geomedian.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'hdmedians.geomedian' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/hdmedians cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include/python3.7m -c hdmedians/geomedian.c -o build/temp.dragonfly-5.9-x86_64-3.7/hdmedians/geomedian.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from hdmedians/geomedian.c:611: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/hdmedians/geomedian.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/geomedian.so SUCCEEDED 00:00:30 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-hdmedians-0.14 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-hdmedians-0.14 depends on package: py37-setuptools>0 - found ===> py37-hdmedians-0.14 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-hdmedians-0.14 ===> py37-hdmedians-0.14 depends on package: py37-numpy>=1.16,1<1.20,1 - found ===> py37-hdmedians-0.14 depends on package: py37-setuptools>0 - found ===> py37-hdmedians-0.14 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running build_ext skipping 'hdmedians/geomedian.c' Cython extension (up-to-date) running install_lib creating /construction/math/py-hdmedians/stage/usr/local/lib/python3.7 creating /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages creating /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians copying build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/medoid.py -> /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians copying build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/__init__.py -> /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians creating /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/tests/test_medoid.py -> /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/tests/test_geomedian.py -> /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/tests/__init__.py -> /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/tests copying build/lib.dragonfly-5.9-x86_64-3.7/hdmedians/geomedian.so -> /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians byte-compiling /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/medoid.py to medoid.cpython-37.pyc byte-compiling /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/tests/test_medoid.py to test_medoid.cpython-37.pyc byte-compiling /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/tests/test_geomedian.py to test_geomedian.cpython-37.pyc byte-compiling /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians/tests/__init__.py to __init__.cpython-37.pyc writing byte-compilation script '/tmp/tmpgii9eoo_.py' /usr/local/bin/python3.7 /tmp/tmpgii9eoo_.py removing /tmp/tmpgii9eoo_.py running install_egg_info running egg_info writing hdmedians.egg-info/PKG-INFO writing dependency_links to hdmedians.egg-info/dependency_links.txt writing requirements to hdmedians.egg-info/requires.txt writing top-level names to hdmedians.egg-info/top_level.txt reading manifest file 'hdmedians.egg-info/SOURCES.txt' writing manifest file 'hdmedians.egg-info/SOURCES.txt' Copying hdmedians.egg-info to /construction/math/py-hdmedians/stage/usr/local/lib/python3.7/site-packages/hdmedians-0.14-py3.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-hdmedians/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/hdmedians/geomedian.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-hdmedians-0.14 file sizes/checksums [21]: 0% file sizes/checksums [21]: 100% packing files [21]: 0% packing files [21]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:01:05