------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: The fasta port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> fasta-21.1.1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: The fasta port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> fasta-21.1.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by fasta-21.1.1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: The fasta port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> fasta-21.1.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by fasta-21.1.1 for building => SHA256 Checksum OK for fasta-21.1.1.shar.Z. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: The fasta port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> fasta-21.1.1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by fasta-21.1.1 for building ===> Extracting for fasta-21.1.1 => SHA256 Checksum OK for fasta-21.1.1.shar.Z. Extracted Memory Use: 1.28M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for fasta-21.1.1 ===> Applying ports patches for fasta-21.1.1 from /xports/biology/fasta/files SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> Configuring for fasta-21.1.1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for fasta-21.1.1 --- plalign2.o --- --- plsim3.o --- --- lalign2.o --- --- apam.o --- --- lsim3.o --- --- lgetaa.o --- --- ndispn.o --- --- ag_stats.o --- --- time.o --- --- ps_dispn.o --- --- plalign2.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -DTPLOT -c lalign2.c -o plalign2.o --- plsim3.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -DTPLOT -c lsim3.c -o plsim3.o --- lalign2.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c lalign2.c --- apam.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c apam.c --- lsim3.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c lsim3.c --- lgetaa.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -DNOLIB -c nxgetaa.c -o lgetaa.o --- ndispn.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c ndispn.c --- ag_stats.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c ag_stats.c --- time.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -DHZ=60 -c time.c --- ps_dispn.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c ps_dispn.c --- align.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c align.c --- llmax.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c llmax.c --- llmax0.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c llmax0.c --- tgrease.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c tgrease.c --- ps_plotsub.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c ps_plotsub.c ps_plotsub.c: In function 'drawstr': ps_plotsub.c:97:13: warning: implicit declaration of function 'strchr' [-Wimplicit-function-declaration] for (bp = strchr(str,'('); (bp!=NULL); bp = strchr(bp+1,'(')) *bp=' '; ^~~~~~ ps_plotsub.c:97:13: warning: incompatible implicit declaration of built-in function 'strchr' ps_plotsub.c:97:13: note: include '' or provide a declaration of 'strchr' ps_plotsub.c:5:1: +#include ps_plotsub.c:97:13: for (bp = strchr(str,'('); (bp!=NULL); bp = strchr(bp+1,'(')) *bp=' '; ^~~~~~ ps_plotsub.c:98:13: warning: incompatible implicit declaration of built-in function 'strchr' for (bp = strchr(str,')'); (bp!=NULL); bp = strchr(bp+1,')')) *bp=' '; ^~~~~~ ps_plotsub.c:98:13: note: include '' or provide a declaration of 'strchr' ps_plotsub.c: In function 'xaxis': ps_plotsub.c:132:16: warning: implicit declaration of function 'strlen' [-Wimplicit-function-declaration] move(SX(n/2)-strlen(title)*8,i); ^~~~~~ ps_plotsub.c:132:16: warning: incompatible implicit declaration of built-in function 'strlen' ps_plotsub.c:132:16: note: include '' or provide a declaration of 'strlen' --- chofas.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c chofas.c --- garnier.o --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN -c garnier.c --- psgrease --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN tgrease.o lgetaa.o ps_plotsub.o -o psgrease --- align --- cc align.o apam.o llmax.o lgetaa.o ndispn.o time.o -lm -o align --- align0 --- cc align.o apam.o llmax0.o lgetaa.o ndispn.o time.o -lm -o align0 --- garnier --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN garnier.o lgetaa.o -o garnier --- chofas --- cc -pipe -O2 -fno-strict-aliasing -DUNIX -DPGM_DOC -DBIGMEM -DSFCHAR="':'" -DEXPM1 -DPROGRESS -DGAP_OPEN chofas.o lgetaa.o -o chofas --- lalign --- cc lalign2.o apam.o lsim3.o lgetaa.o ndispn.o ag_stats.o time.o -lm -o lalign --- plalign --- cc plalign2.o apam.o plsim3.o lgetaa.o ps_dispn.o ag_stats.o time.o -lm -o plalign SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for fasta-21.1.1 ===> Generating temporary packing list install -s -m 555 lalign plalign align align0 psgrease chofas garnier /construction/biology/fasta/stage/usr/local/bin install -m 444 /construction/biology/fasta/fasta/align.1 /construction/biology/fasta/fasta/fasta.1 /construction/biology/fasta/fasta/lalign.1 /construction/biology/fasta/fasta/prdf.1 /construction/biology/fasta/fasta/prss.1 /construction/biology/fasta/fasta/randseq.1 /construction/biology/fasta/fasta/ssearch.1 /construction/biology/fasta/stage/usr/local/man/man1 ln -s fasta.1.gz /construction/biology/fasta/stage/usr/local/man/man1/tfasta.1.gz ln -s fasta.1.gz /construction/biology/fasta/stage/usr/local/man/man1/lfasta.1.gz ln -s fasta.1.gz /construction/biology/fasta/stage/usr/local/man/man1/plfasta.1.gz ln -s fasta.1.gz /construction/biology/fasta/stage/usr/local/man/man1/fastx.1.gz ln -s fasta.1.gz /construction/biology/fasta/stage/usr/local/man/man1/tfastx.1.gz ln -s align.1.gz /construction/biology/fasta/stage/usr/local/man/man1/align0.1.gz ln -s align.1.gz /construction/biology/fasta/stage/usr/local/man/man1/plalign.1.gz install -m 0644 /construction/biology/fasta/fasta/COPYRIGHT /construction/biology/fasta/fasta/README.versions /construction/biology/fasta/fasta/fasta20.doc /construction/biology/fasta/fasta/fasta20.me /construction/biology/fasta/fasta/format.doc /construction/biology/fasta/fasta/readme.* /construction/biology/fasta/stage/usr/local/share/doc/fasta ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- ====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for fasta-21.1.1 file sizes/checksums [34]: 0% file sizes/checksums [34]: 100% packing files [34]: 0% packing files [34]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:05