------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.7.txz ===== Message from python37-3.7.7: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-numpy-1.16.5_5,1.txz Installing /packages/All/py37-scipy-1.2.2_1.txz Installing /packages/All/py37-cython-0.29.15.txz UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:57 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scikit-sparse-0.4.4_3 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scikit-sparse-0.4.4_3 for building => SHA256 Checksum OK for scikit-sparse-0.4.4.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scikit-sparse-0.4.4_3 for building ===> Extracting for py37-scikit-sparse-0.4.4_3 => SHA256 Checksum OK for scikit-sparse-0.4.4.tar.gz. Extracted Memory Use: 1.60M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-scikit-sparse-0.4.4_3 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-numpy>=1.16,1<1.19,1 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-scipy>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: gfortran8 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/python3.7 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: gfortran8 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: cython-3.7 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/python3.7 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-numpy>=1.16,1<1.19,1 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-scipy>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: gfortran8 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/python3.7 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: gfortran8 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: cython-3.7 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/python3.7 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/as - found ===> py37-scikit-sparse-0.4.4_3 depends on shared library: libumfpack.so - found (/usr/local/lib/libumfpack.so) ===> Configuring for py37-scikit-sparse-0.4.4_3 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-scikit-sparse-0.4.4_3 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/sksparse copying sksparse/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse copying sksparse/test_cholmod.py -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse copying sksparse/_version.py -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse creating build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/illc1033_rhs1.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/illc1850.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/illc1033.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/illc1850_rhs1.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/well1033_rhs1.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/well1033.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/well1850_rhs1.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data copying sksparse/test_data/well1850.mtx.gz -> build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data UPDATING build/lib.dragonfly-5.9-x86_64-3.7/sksparse/_version.py set build/lib.dragonfly-5.9-x86_64-3.7/sksparse/_version.py to '0.4.4' running build_ext skipping 'sksparse/cholmod.c' Cython extension (up-to-date) building 'sksparse.cholmod' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/sksparse cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -I/usr/local/include/suitesparse -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python3.7/site-packages/numpy/core/include -I/usr/local/include -I/usr/include/suitesparse -I/usr/local/include/python3.7m -c sksparse/cholmod.c -o build/temp.dragonfly-5.9-x86_64-3.7/sksparse/cholmod.o In file included from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from sksparse/cholmod.c:610: /usr/local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -I/usr/local/include/suitesparse -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/sksparse/cholmod.o -L/usr/local/lib -lcholmod -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/sksparse/cholmod.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) SUCCEEDED 00:00:26 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-numpy>=1.16,1<1.19,1 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-scipy>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: gfortran8 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-scikit-sparse-0.4.4_3 ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-numpy>=1.16,1<1.19,1 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-scipy>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on executable: gfortran8 - found ===> py37-scikit-sparse-0.4.4_3 depends on package: py37-setuptools>0 - found ===> py37-scikit-sparse-0.4.4_3 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py UPDATING build/lib.dragonfly-5.9-x86_64-3.7/sksparse/_version.py set build/lib.dragonfly-5.9-x86_64-3.7/sksparse/_version.py to '0.4.4' running build_ext skipping 'sksparse/cholmod.c' Cython extension (up-to-date) running install_lib creating /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7 creating /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/cholmod.so -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/_version.py -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/__init__.py -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_cholmod.py -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse creating /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/well1033.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/well1850_rhs1.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/well1033_rhs1.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/illc1850_rhs1.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/illc1850.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/well1850.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/illc1033.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data copying build/lib.dragonfly-5.9-x86_64-3.7/sksparse/test_data/illc1033_rhs1.mtx.gz -> /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_data byte-compiling /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/_version.py to _version.cpython-37.pyc byte-compiling /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/sksparse/test_cholmod.py to test_cholmod.cpython-37.pyc writing byte-compilation script '/tmp/tmpxd38_0ya.py' /usr/local/bin/python3.7 /tmp/tmpxd38_0ya.py removing /tmp/tmpxd38_0ya.py running install_egg_info running egg_info writing scikit_sparse.egg-info/PKG-INFO writing dependency_links to scikit_sparse.egg-info/dependency_links.txt writing requirements to scikit_sparse.egg-info/requires.txt writing top-level names to scikit_sparse.egg-info/top_level.txt reading manifest file 'scikit_sparse.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'doc/_build' no previously-included directories found matching 'dist' warning: no previously-included files matching '*~' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '*.pyc' found anywhere in distribution writing manifest file 'scikit_sparse.egg-info/SOURCES.txt' Copying scikit_sparse.egg-info to /construction/science/py-scikit-sparse/stage/usr/local/lib/python3.7/site-packages/scikit_sparse-0.4.4-py3.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-scikit-sparse/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/sksparse/cholmod.so is linked to /usr/local/lib/libmetis.so.2 from math/metis but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libmetis.so:math/metis Error: /usr/local/lib/python3.7/site-packages/sksparse/cholmod.so is linked to /usr/local/lib/libopenblasp-r0.3.9.so from math/openblas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libopenblasp-r0.3.9.so:math/openblas Error: /usr/local/lib/python3.7/site-packages/sksparse/cholmod.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-scikit-sparse-0.4.4_3 file sizes/checksums [23]: 0% file sizes/checksums [23]: 100% packing files [23]: 0% packing files [23]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:01:32