------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/sqlite3-3.31.1_1,1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18.txz ===== Message from python27-2.7.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-sqlite3-2.7.18_7.txz ===== Message from py27-sqlite3-2.7.18_7: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-ruffus-2.8.3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-ruffus-2.8.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-ruffus-2.8.3 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-ruffus-2.8.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-ruffus-2.8.3 for building => SHA256 Checksum OK for ruffus-2.8.3.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-ruffus-2.8.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-ruffus-2.8.3 for building ===> Extracting for py27-ruffus-2.8.3 => SHA256 Checksum OK for ruffus-2.8.3.tar.gz. Extracted Memory Use: 15.40M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-ruffus-2.8.3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-ruffus-2.8.3 depends on package: py27-sqlite3>0 - found ===> py27-ruffus-2.8.3 depends on package: py27-setuptools>0 - found ===> py27-ruffus-2.8.3 depends on file: /usr/local/bin/python2.7 - found ===> py27-ruffus-2.8.3 depends on package: py27-setuptools>0 - found ===> py27-ruffus-2.8.3 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-ruffus-2.8.3 depends on package: py27-sqlite3>0 - found ===> py27-ruffus-2.8.3 depends on package: py27-setuptools>0 - found ===> py27-ruffus-2.8.3 depends on file: /usr/local/bin/python2.7 - found ===> py27-ruffus-2.8.3 depends on package: py27-setuptools>0 - found ===> py27-ruffus-2.8.3 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-ruffus-2.8.3 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-ruffus-2.8.3 running build running build_py creating build creating build/lib creating build/lib/ruffus copying ruffus/dbdict.py -> build/lib/ruffus copying ruffus/graph.py -> build/lib/ruffus copying ruffus/__init__.py -> build/lib/ruffus copying ruffus/parse_old_style_ruffus.py -> build/lib/ruffus copying ruffus/print_dependencies.py -> build/lib/ruffus copying ruffus/drmaa_wrapper.py -> build/lib/ruffus copying ruffus/proxy_logger.py -> build/lib/ruffus copying ruffus/task.py -> build/lib/ruffus copying ruffus/file_name_parameters.py -> build/lib/ruffus copying ruffus/ruffus_exceptions.py -> build/lib/ruffus copying ruffus/combinatorics.py -> build/lib/ruffus copying ruffus/adjacent_pairs_iterate.py -> build/lib/ruffus copying ruffus/cmdline.py -> build/lib/ruffus copying ruffus/ruffus_version.py -> build/lib/ruffus copying ruffus/ruffus_utility.py -> build/lib/ruffus running egg_info writing ruffus.egg-info/PKG-INFO writing top-level names to ruffus.egg-info/top_level.txt writing dependency_links to ruffus.egg-info/dependency_links.txt reading manifest file 'ruffus.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'ruffus.egg-info/SOURCES.txt' creating build/lib/ruffus/test copying ruffus/test/check_subpipeline_cmdline.py -> build/lib/ruffus/test copying ruffus/test/complicated_example.py -> build/lib/ruffus/test copying ruffus/test/create_test_script_from_dependency_tree.py -> build/lib/ruffus/test copying ruffus/test/draw_specified_dependency_tree.py -> build/lib/ruffus/test copying ruffus/test/five_second.py -> build/lib/ruffus/test copying ruffus/test/manual_test_ctrl_c_exceptions.py -> build/lib/ruffus/test copying ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py -> build/lib/ruffus/test copying ruffus/test/manual_test_drmaa.py -> build/lib/ruffus/test copying ruffus/test/play_with_colours.py -> build/lib/ruffus/test copying ruffus/test/qrsh_workaround.py -> build/lib/ruffus/test copying ruffus/test/run_all_unit_tests.cmd -> build/lib/ruffus/test copying ruffus/test/run_all_unit_tests3.cmd -> build/lib/ruffus/test copying ruffus/test/simpler_with_shared_logging.py -> build/lib/ruffus/test copying ruffus/test/slow_process_for_testing.py -> build/lib/ruffus/test copying ruffus/test/test_N_x_M_and_collate.py -> build/lib/ruffus/test copying ruffus/test/test_active_if.py -> build/lib/ruffus/test copying ruffus/test/test_branching_dependencies.py -> build/lib/ruffus/test copying ruffus/test/test_check_if_uptodate.py -> build/lib/ruffus/test copying ruffus/test/test_cmdline.py -> build/lib/ruffus/test copying ruffus/test/test_collate.py -> build/lib/ruffus/test copying ruffus/test/test_combinatorics.py -> build/lib/ruffus/test copying ruffus/test/test_drmaa_wrapper_run_job_locally.py -> build/lib/ruffus/test copying ruffus/test/test_empty_files_decorator.py -> build/lib/ruffus/test copying ruffus/test/test_exceptions.py -> build/lib/ruffus/test copying ruffus/test/test_file_name_parameters.py -> build/lib/ruffus/test copying ruffus/test/test_files_decorator.py -> build/lib/ruffus/test copying ruffus/test/test_filesre_combine.py -> build/lib/ruffus/test copying ruffus/test/test_filesre_split_and_combine.py -> build/lib/ruffus/test copying ruffus/test/test_follows_mkdir.py -> build/lib/ruffus/test copying ruffus/test/test_graphviz.py -> build/lib/ruffus/test copying ruffus/test/test_inputs_with_multiple_args_raising_exception.py -> build/lib/ruffus/test copying ruffus/test/test_job_completion_checksums.py -> build/lib/ruffus/test copying ruffus/test/test_job_history_with_exceptions.py -> build/lib/ruffus/test copying ruffus/test/test_mkdir.py -> build/lib/ruffus/test copying ruffus/test/test_newstyle_combinatorics.py -> build/lib/ruffus/test copying ruffus/test/test_newstyle_proxy.py -> build/lib/ruffus/test copying ruffus/test/test_newstyle_regex_error_messages.py -> build/lib/ruffus/test copying ruffus/test/test_pausing.py -> build/lib/ruffus/test copying ruffus/test/test_pipeline_printout_graph.py -> build/lib/ruffus/test copying ruffus/test/test_pool_manager.py -> build/lib/ruffus/test copying ruffus/test/test_posttask_merge.py -> build/lib/ruffus/test copying ruffus/test/test_proxy_logger.py -> build/lib/ruffus/test copying ruffus/test/test_regex_error_messages.py -> build/lib/ruffus/test copying ruffus/test/test_ruffus_utility.py -> build/lib/ruffus/test copying ruffus/test/test_ruffus_utility_parse_task_arguments.py -> build/lib/ruffus/test copying ruffus/test/test_runtime_data.py -> build/lib/ruffus/test copying ruffus/test/test_softlink_uptodate.py -> build/lib/ruffus/test copying ruffus/test/test_split_and_combine.py -> build/lib/ruffus/test copying ruffus/test/test_split_regex_and_collate.py -> build/lib/ruffus/test copying ruffus/test/test_split_subdivide_checkpointing.py -> build/lib/ruffus/test copying ruffus/test/test_subpipeline.py -> build/lib/ruffus/test copying ruffus/test/test_suffix_output_dir.py -> build/lib/ruffus/test copying ruffus/test/test_task_file_dependencies.py -> build/lib/ruffus/test copying ruffus/test/test_task_misc.py -> build/lib/ruffus/test copying ruffus/test/test_transform_add_inputs.py -> build/lib/ruffus/test copying ruffus/test/test_transform_formatter.py -> build/lib/ruffus/test copying ruffus/test/test_transform_inputs.py -> build/lib/ruffus/test copying ruffus/test/test_transform_with_no_re_matches.py -> build/lib/ruffus/test copying ruffus/test/test_tutorial7.py -> build/lib/ruffus/test copying ruffus/test/test_unicode_filenames.py -> build/lib/ruffus/test copying ruffus/test/test_verbosity.py -> build/lib/ruffus/test copying ruffus/test/test_with_logger.py -> build/lib/ruffus/test SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-ruffus-2.8.3 depends on package: py27-sqlite3>0 - found ===> py27-ruffus-2.8.3 depends on package: py27-setuptools>0 - found ===> py27-ruffus-2.8.3 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-ruffus-2.8.3 ===> py27-ruffus-2.8.3 depends on package: py27-sqlite3>0 - found ===> py27-ruffus-2.8.3 depends on package: py27-setuptools>0 - found ===> py27-ruffus-2.8.3 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py running egg_info writing ruffus.egg-info/PKG-INFO writing top-level names to ruffus.egg-info/top_level.txt writing dependency_links to ruffus.egg-info/dependency_links.txt reading manifest file 'ruffus.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'ruffus.egg-info/SOURCES.txt' running install_lib creating /construction/science/py-ruffus/stage/usr/local/lib/python2.7 creating /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/__init__.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/dbdict.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/adjacent_pairs_iterate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/ruffus_version.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/combinatorics.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/drmaa_wrapper.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/graph.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/file_name_parameters.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/cmdline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/task.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/print_dependencies.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/ruffus_utility.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/parse_old_style_ruffus.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus copying build/lib/ruffus/proxy_logger.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus creating /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_newstyle_proxy.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/check_subpipeline_cmdline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_ruffus_utility.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/complicated_example.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_mkdir.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_tutorial7.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_check_if_uptodate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/simpler_with_shared_logging.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_ruffus_utility_parse_task_arguments.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/draw_specified_dependency_tree.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_with_no_re_matches.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_formatter.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_inputs_with_multiple_args_raising_exception.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_active_if.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_split_and_combine.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_branching_dependencies.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_filesre_split_and_combine.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_inputs.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/manual_test_drmaa.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_unicode_filenames.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_pipeline_printout_graph.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/slow_process_for_testing.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_runtime_data.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_combinatorics.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/run_all_unit_tests3.cmd -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_subpipeline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_empty_files_decorator.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_split_regex_and_collate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_with_logger.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_newstyle_combinatorics.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/manual_test_ctrl_c_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_job_completion_checksums.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_drmaa_wrapper_run_job_locally.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_verbosity.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_pausing.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/five_second.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/play_with_colours.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_follows_mkdir.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_proxy_logger.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_N_x_M_and_collate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_pool_manager.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/create_test_script_from_dependency_tree.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_task_file_dependencies.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_split_subdivide_checkpointing.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_posttask_merge.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/qrsh_workaround.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_file_name_parameters.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_suffix_output_dir.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_softlink_uptodate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_cmdline.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_job_history_with_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_collate.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/run_all_unit_tests.cmd -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_graphviz.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_task_misc.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_regex_error_messages.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_transform_add_inputs.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_newstyle_regex_error_messages.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_files_decorator.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/test/test_filesre_combine.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test copying build/lib/ruffus/ruffus_exceptions.py -> /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/__init__.py to __init__.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/dbdict.py to dbdict.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/adjacent_pairs_iterate.py to adjacent_pairs_iterate.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/ruffus_version.py to ruffus_version.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/combinatorics.py to combinatorics.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/drmaa_wrapper.py to drmaa_wrapper.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/graph.py to graph.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/file_name_parameters.py to file_name_parameters.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/cmdline.py to cmdline.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/task.py to task.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/print_dependencies.py to print_dependencies.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/ruffus_utility.py to ruffus_utility.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/parse_old_style_ruffus.py to parse_old_style_ruffus.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/proxy_logger.py to proxy_logger.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_newstyle_proxy.py to test_newstyle_proxy.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/check_subpipeline_cmdline.py to check_subpipeline_cmdline.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_ruffus_utility.py to test_ruffus_utility.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/complicated_example.py to complicated_example.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_mkdir.py to test_mkdir.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_tutorial7.py to test_tutorial7.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_check_if_uptodate.py to test_check_if_uptodate.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/simpler_with_shared_logging.py to simpler_with_shared_logging.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_ruffus_utility_parse_task_arguments.py to test_ruffus_utility_parse_task_arguments.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/draw_specified_dependency_tree.py to draw_specified_dependency_tree.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_transform_with_no_re_matches.py to test_transform_with_no_re_matches.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_transform_formatter.py to test_transform_formatter.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_inputs_with_multiple_args_raising_exception.py to test_inputs_with_multiple_args_raising_exception.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_active_if.py to test_active_if.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_split_and_combine.py to test_split_and_combine.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_branching_dependencies.py to test_branching_dependencies.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_filesre_split_and_combine.py to test_filesre_split_and_combine.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_transform_inputs.py to test_transform_inputs.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/manual_test_drmaa.py to manual_test_drmaa.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_unicode_filenames.py to test_unicode_filenames.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_pipeline_printout_graph.py to test_pipeline_printout_graph.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/slow_process_for_testing.py to slow_process_for_testing.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_runtime_data.py to test_runtime_data.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_combinatorics.py to test_combinatorics.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_subpipeline.py to test_subpipeline.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_empty_files_decorator.py to test_empty_files_decorator.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_split_regex_and_collate.py to test_split_regex_and_collate.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/manual_test_ctrl_c_exceptions_drmaa.py to manual_test_ctrl_c_exceptions_drmaa.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_with_logger.py to test_with_logger.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_newstyle_combinatorics.py to test_newstyle_combinatorics.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/manual_test_ctrl_c_exceptions.py to manual_test_ctrl_c_exceptions.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_job_completion_checksums.py to test_job_completion_checksums.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_drmaa_wrapper_run_job_locally.py to test_drmaa_wrapper_run_job_locally.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_verbosity.py to test_verbosity.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_pausing.py to test_pausing.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/five_second.py to five_second.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/play_with_colours.py to play_with_colours.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_follows_mkdir.py to test_follows_mkdir.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_proxy_logger.py to test_proxy_logger.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_N_x_M_and_collate.py to test_N_x_M_and_collate.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_pool_manager.py to test_pool_manager.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/create_test_script_from_dependency_tree.py to create_test_script_from_dependency_tree.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_task_file_dependencies.py to test_task_file_dependencies.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_split_subdivide_checkpointing.py to test_split_subdivide_checkpointing.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_posttask_merge.py to test_posttask_merge.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/qrsh_workaround.py to qrsh_workaround.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_file_name_parameters.py to test_file_name_parameters.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_suffix_output_dir.py to test_suffix_output_dir.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_softlink_uptodate.py to test_softlink_uptodate.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_cmdline.py to test_cmdline.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_job_history_with_exceptions.py to test_job_history_with_exceptions.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_collate.py to test_collate.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_graphviz.py to test_graphviz.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_task_misc.py to test_task_misc.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_regex_error_messages.py to test_regex_error_messages.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_transform_add_inputs.py to test_transform_add_inputs.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_newstyle_regex_error_messages.py to test_newstyle_regex_error_messages.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_exceptions.py to test_exceptions.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_files_decorator.py to test_files_decorator.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/test/test_filesre_combine.py to test_filesre_combine.pyc byte-compiling /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus/ruffus_exceptions.py to ruffus_exceptions.pyc writing byte-compilation script '/tmp/tmpFdcTco.py' /usr/local/bin/python2.7 -O /tmp/tmpFdcTco.py removing /tmp/tmpFdcTco.py running install_egg_info Copying ruffus.egg-info to /construction/science/py-ruffus/stage/usr/local/lib/python2.7/site-packages/ruffus-2.8.3-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-ruffus/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-ruffus-2.8.3 file sizes/checksums [231]: 0% file sizes/checksums [231]: 43% file sizes/checksums [231]: 86% file sizes/checksums [231]: 100% packing files [231]: 0% packing files [231]: 43% packing files [231]: 86% packing files [231]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:13