------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18.txz ===== Message from python27-2.7.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libgpg-error-1.37.txz Installing /packages/All/libgcrypt-1.8.5.txz Installing /packages/All/libxslt-1.1.34_1.txz Installing /packages/All/py27-lxml-4.5.0.txz ===== Message from py27-lxml-4.5.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/freetype2-2.10.1.txz ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/png-1.6.37.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/tcl86-8.6.10.txz Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/py27-numpy-1.16.5_5,1.txz ===== Message from py27-numpy-1.16.5_5,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-six-1.14.0.txz ===== Message from py27-six-1.14.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-cycler-0.10.0.txz ===== Message from py27-cycler-0.10.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-dateutil-2.8.0.txz ===== Message from py27-dateutil-2.8.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pytz-2020.1,1.txz ===== Message from py27-pytz-2020.1,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pyparsing-2.4.7.txz ===== Message from py27-pyparsing-2.4.7: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-futures-3.3.0.txz ===== Message from py27-futures-3.3.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-singledispatch-3.4.0.3_1.txz ===== Message from py27-singledispatch-3.4.0.3_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-backports_abc-0.5.txz ===== Message from py27-backports_abc-0.5: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-tornado-5.1.1.txz ===== Message from py27-tornado-5.1.1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-kiwisolver-1.1.0.txz ===== Message from py27-kiwisolver-1.1.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9_1,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/tk86-8.6.10_1.txz Installing /packages/All/py27-tkinter-2.7.18_6.txz ===== Message from py27-tkinter-2.7.18_6: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-backports-1.txz ===== Message from py27-backports-1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-backports.functools_lru_cache-1.5.txz ===== Message from py27-backports.functools_lru_cache-1.5: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-matplotlib-2.2.4_2.txz ===== Message from py27-matplotlib-2.2.4_2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/sqlite3-3.31.1_1,1.txz Installing /packages/All/py27-sqlite3-2.7.18_7.txz ===== Message from py27-sqlite3-2.7.18_7: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-bottleneck-1.3.2.txz ===== Message from py27-bottleneck-1.3.2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-numexpr-2.7.1.txz ===== Message from py27-numexpr-2.7.1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pandas-0.24.2_1,1.txz ===== Message from py27-pandas-0.24.2_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-sqlalchemy13-1.3.16.txz ===== Message from py27-sqlalchemy13-1.3.16: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:56 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-pyteomics-4.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-pyteomics-4.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pyteomics-4.2 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-pyteomics-4.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pyteomics-4.2 for building => SHA256 Checksum OK for pyteomics-4.2.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-pyteomics-4.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pyteomics-4.2 for building ===> Extracting for py27-pyteomics-4.2 => SHA256 Checksum OK for pyteomics-4.2.tar.gz. Extracted Memory Use: 1.11M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-pyteomics-4.2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-pyteomics-4.2 depends on package: py27-setuptools>0 - found ===> py27-pyteomics-4.2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-pyteomics-4.2 depends on package: py27-setuptools>0 - found ===> py27-pyteomics-4.2 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-pyteomics-4.2 running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-pyteomics-4.2 running build running build_py creating build creating build/lib creating build/lib/pyteomics copying pyteomics/ms1.py -> build/lib/pyteomics copying pyteomics/electrochem.py -> build/lib/pyteomics copying pyteomics/ms2.py -> build/lib/pyteomics copying pyteomics/mzml.py -> build/lib/pyteomics copying pyteomics/fasta.py -> build/lib/pyteomics copying pyteomics/mzid.py -> build/lib/pyteomics copying pyteomics/mztab.py -> build/lib/pyteomics copying pyteomics/mzxml.py -> build/lib/pyteomics copying pyteomics/mgf.py -> build/lib/pyteomics copying pyteomics/achrom.py -> build/lib/pyteomics copying pyteomics/__init__.py -> build/lib/pyteomics copying pyteomics/_schema_defaults.py -> build/lib/pyteomics copying pyteomics/protxml.py -> build/lib/pyteomics copying pyteomics/xml.py -> build/lib/pyteomics copying pyteomics/pylab_aux.py -> build/lib/pyteomics copying pyteomics/parser.py -> build/lib/pyteomics copying pyteomics/pepxml.py -> build/lib/pyteomics copying pyteomics/tandem.py -> build/lib/pyteomics copying pyteomics/peff.py -> build/lib/pyteomics copying pyteomics/traml.py -> build/lib/pyteomics creating build/lib/pyteomics/mass copying pyteomics/mass/__init__.py -> build/lib/pyteomics/mass copying pyteomics/mass/unimod.py -> build/lib/pyteomics/mass copying pyteomics/mass/mass.py -> build/lib/pyteomics/mass creating build/lib/pyteomics/openms copying pyteomics/openms/__init__.py -> build/lib/pyteomics/openms copying pyteomics/openms/featurexml.py -> build/lib/pyteomics/openms copying pyteomics/openms/trafoxml.py -> build/lib/pyteomics/openms creating build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/__init__.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/math.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/utils.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/target_decoy.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/patch.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/structures.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/constants.py -> build/lib/pyteomics/auxiliary copying pyteomics/auxiliary/file_helpers.py -> build/lib/pyteomics/auxiliary SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-pyteomics-4.2 depends on package: py27-lxml>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-matplotlib>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-pyteomics-4.2 depends on package: py27-pandas>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-sqlalchemy13>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-setuptools>0 - found ===> py27-pyteomics-4.2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-pyteomics-4.2 ===> py27-pyteomics-4.2 depends on package: py27-lxml>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-matplotlib>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-pyteomics-4.2 depends on package: py27-pandas>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-sqlalchemy13>=0 - found ===> py27-pyteomics-4.2 depends on package: py27-setuptools>0 - found ===> py27-pyteomics-4.2 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_py running install_lib copying pyteomics/achrom.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/mzml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/fasta.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/traml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/pylab_aux.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/xml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/parser.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/tandem.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/mzxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics Skipping installation of /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/__init__.py (namespace package) copying pyteomics/electrochem.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/ms1.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/peff.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/protxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/pepxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/mztab.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/_schema_defaults.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/mgf.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/mzid.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/ms2.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics copying pyteomics/openms/featurexml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/openms copying pyteomics/openms/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/openms copying pyteomics/openms/trafoxml.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/openms copying pyteomics/auxiliary/file_helpers.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/math.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/patch.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/constants.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/utils.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/target_decoy.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/auxiliary/structures.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary copying pyteomics/mass/mass.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mass copying pyteomics/mass/unimod.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mass copying pyteomics/mass/__init__.py -> /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mass byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/achrom.py to achrom.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mzml.py to mzml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/fasta.py to fasta.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/traml.py to traml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/pylab_aux.py to pylab_aux.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/xml.py to xml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/parser.py to parser.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/tandem.py to tandem.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mzxml.py to mzxml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/electrochem.py to electrochem.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/ms1.py to ms1.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/peff.py to peff.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/protxml.py to protxml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/pepxml.py to pepxml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mztab.py to mztab.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/_schema_defaults.py to _schema_defaults.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mgf.py to mgf.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mzid.py to mzid.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/ms2.py to ms2.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/openms/featurexml.py to featurexml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/openms/__init__.py to __init__.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/openms/trafoxml.py to trafoxml.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/file_helpers.py to file_helpers.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/math.py to math.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/patch.py to patch.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/constants.py to constants.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/__init__.py to __init__.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/utils.py to utils.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/target_decoy.py to target_decoy.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/auxiliary/structures.py to structures.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mass/mass.py to mass.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mass/unimod.py to unimod.pyc byte-compiling /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics/mass/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpq8US0d.py' /usr/local/bin/python2.7 -O /tmp/tmpq8US0d.py removing /tmp/tmpq8US0d.py running install_egg_info running egg_info writing requirements to pyteomics.egg-info/requires.txt writing pyteomics.egg-info/PKG-INFO writing namespace_packages to pyteomics.egg-info/namespace_packages.txt writing top-level names to pyteomics.egg-info/top_level.txt writing dependency_links to pyteomics.egg-info/dependency_links.txt reading manifest file 'pyteomics.egg-info/SOURCES.txt' writing manifest file 'pyteomics.egg-info/SOURCES.txt' Copying pyteomics.egg-info to /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics-4.2-py2.7.egg-info Installing /construction/science/py-pyteomics/stage/usr/local/lib/python2.7/site-packages/pyteomics-4.2-py2.7-nspkg.pth running install_scripts writing list of installed files to '/construction/science/py-pyteomics/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-pyteomics-4.2 file sizes/checksums [107]: 0% file sizes/checksums [107]: 93% file sizes/checksums [107]: 100% packing files [107]: 0% packing files [107]: 93% packing files [107]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:01:05