------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.7.txz ===== Message from python37-3.7.7: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-pybind11-2.4.3.txz Installing /packages/All/py37-atomicwrites-1.3.0.txz Installing /packages/All/py37-attrs-19.3.0.txz Installing /packages/All/py37-more-itertools-8.2.0.txz Installing /packages/All/py37-zipp-0.6.0_3.txz Installing /packages/All/py37-importlib-metadata-0.23.txz Installing /packages/All/py37-pluggy-0.12.0.txz Installing /packages/All/py37-py-1.8.1.txz Installing /packages/All/py37-six-1.14.0.txz Installing /packages/All/py37-wcwidth-0.1.8.txz Installing /packages/All/py37-pytest-4.5.0.txz Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/py37-numpy-1.16.5_5,1.txz Installing /packages/All/py37-scipy-1.2.2_1.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:53 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-kliff-0.1.6 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-kliff-0.1.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-kliff-0.1.6 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-kliff-0.1.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-kliff-0.1.6 for building => SHA256 Checksum OK for kliff-0.1.6.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-kliff-0.1.6 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-kliff-0.1.6 for building ===> Extracting for py37-kliff-0.1.6 => SHA256 Checksum OK for kliff-0.1.6.tar.gz. Extracted Memory Use: 3.52M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-kliff-0.1.6 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-kliff-0.1.6 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.6 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.6 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-kliff-0.1.6 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.6 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.6 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-kliff-0.1.6 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-kliff-0.1.6 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-3.7 creating build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/loss.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/log.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/wrapcalculator.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/atomic_data.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/lmplatconst.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/parallel.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/utils.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/error.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/nn.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff copying kliff/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor copying kliff/neighbor/neighbor.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor copying kliff/neighbor/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline copying kliff/cmdline/model.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline copying kliff/cmdline/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline copying kliff/cmdline/dataset.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors copying kliff/descriptors/descriptor.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors copying kliff/descriptors/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/lennard_jones.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/parameter.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/model.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/linear_regression.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/kim.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/neural_network.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/model_torch.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models copying kliff/models/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/models creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators copying kliff/calculators/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators copying kliff/calculators/calculator.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators copying kliff/calculators/calculator_torch.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers copying kliff/analyzers/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers copying kliff/analyzers/rmse.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers copying kliff/analyzers/fisher.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/dataset_torch.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/dataset.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset copying kliff/dataset/extxyz.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum copying kliff/descriptors/bispectrum/bispectrum.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum copying kliff/descriptors/bispectrum/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum creating build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function copying kliff/descriptors/symmetry_function/sym_fn.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function copying kliff/descriptors/symmetry_function/__init__.py -> build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function running build_ext building 'kliff.descriptors.symmetry_function.sf' extension creating build/temp.dragonfly-5.9-x86_64-3.7 creating build/temp.dragonfly-5.9-x86_64-3.7/kliff creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/descriptors/symmetry_function/sym_fn_bind.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn_bind.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/descriptors/symmetry_function/sym_fn.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn.o -std=c++11 In file included from kliff/descriptors/symmetry_function/sym_fn.hpp:4, from kliff/descriptors/symmetry_function/sym_fn.cpp:1: kliff/descriptors/symmetry_function/helper.hpp: In instantiation of 'void _Array_Basic::_range_check(int, std::size_t) const [with DataType = double; std::size_t = long unsigned int]': kliff/descriptors/symmetry_function/helper.hpp:1199:3: required from 'DataType& Array2D::at(int, int) [with DataType = double]' kliff/descriptors/symmetry_function/sym_fn.cpp:955:43: required from here kliff/descriptors/symmetry_function/helper.hpp:849:10: warning: comparison of integer expressions of different signedness: 'int' and 'std::size_t' {aka 'long unsigned int'} [-Wsign-compare] if (_n >= tsize) ~~~^~~~~~~~ cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/descriptors/symmetry_function/helper.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/helper.o -std=c++11 c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn_bind.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/helper.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sf.so building 'kliff.descriptors.bispectrum.bs' extension creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/descriptors/bispectrum/bispectrum_bind.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum_bind.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/descriptors/bispectrum/bispectrum.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/descriptors/bispectrum/helper.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/helper.o -std=c++11 c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum_bind.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/helper.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bs.so building 'kliff.neighbor.nl' extension creating build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/neighbor/neighbor_list.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list.o -std=c++11 cc -Wno-unused-result -Wsign-compare -DNDEBUG -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python3.7m -I/construction/science/py-kliff/.local/include/python3.7m -I/usr/local/include/python3.7m -c kliff/neighbor/neighbor_list_bind.cpp -o build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list_bind.o -std=c++11 c++ -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list.o build/temp.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor_list_bind.o -L/usr/local/lib -lpython3.7m -o build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/nl.so running build_scripts creating build/scripts-3.7 copying and adjusting bin/kliff -> build/scripts-3.7 changing mode of build/scripts-3.7/kliff from 644 to 755 SUCCEEDED 00:00:59 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-kliff-0.1.6 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.6 depends on package: py37-pytest>0 - found ===> py37-kliff-0.1.6 depends on package: py37-scipy>0 - found ===> py37-kliff-0.1.6 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.6 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-kliff-0.1.6 ===> py37-kliff-0.1.6 depends on package: py37-pybind11>0 - found ===> py37-kliff-0.1.6 depends on package: py37-pytest>0 - found ===> py37-kliff-0.1.6 depends on package: py37-scipy>0 - found ===> py37-kliff-0.1.6 depends on package: py37-setuptools>0 - found ===> py37-kliff-0.1.6 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running build_ext running build_scripts running install_lib creating /construction/science/py-kliff/stage/usr/local/lib/python3.7 creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/nl.so -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/neighbor/neighbor.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/log.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/atomic_data.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/parallel.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators/calculator.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators/calculator_torch.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/calculators/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/wrapcalculator.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/parameter.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/kim.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/lennard_jones.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/linear_regression.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/model_torch.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/model.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/models/neural_network.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/dataset_torch.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/extxyz.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/dataset/dataset.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/error.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/loss.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline/dataset.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline/model.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/cmdline/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/descriptor.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sym_fn.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/symmetry_function/sf.so -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bs.so -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/bispectrum.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/bispectrum/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/descriptors/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors creating /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers/__init__.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers/fisher.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/analyzers/rmse.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/utils.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/nn.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff copying build/lib.dragonfly-5.9-x86_64-3.7/kliff/lmplatconst.py -> /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/neighbor/neighbor.py to neighbor.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/log.py to log.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/atomic_data.py to atomic_data.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/parallel.py to parallel.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators/calculator.py to calculator.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators/calculator_torch.py to calculator_torch.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/calculators/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/wrapcalculator.py to wrapcalculator.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/parameter.py to parameter.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/kim.py to kim.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/lennard_jones.py to lennard_jones.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/linear_regression.py to linear_regression.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/model_torch.py to model_torch.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/model.py to model.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/models/neural_network.py to neural_network.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/dataset_torch.py to dataset_torch.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/extxyz.py to extxyz.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/dataset/dataset.py to dataset.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/error.py to error.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/loss.py to loss.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline/dataset.py to dataset.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline/model.py to model.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/cmdline/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/descriptor.py to descriptor.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function/sym_fn.py to sym_fn.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/symmetry_function/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum/bispectrum.py to bispectrum.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/descriptors/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers/fisher.py to fisher.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/analyzers/rmse.py to rmse.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/utils.py to utils.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/nn.py to nn.cpython-37.pyc byte-compiling /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff/lmplatconst.py to lmplatconst.cpython-37.pyc writing byte-compilation script '/tmp/tmpuzhmd9mm.py' /usr/local/bin/python3.7 /tmp/tmpuzhmd9mm.py removing /tmp/tmpuzhmd9mm.py running install_egg_info running egg_info writing kliff.egg-info/PKG-INFO writing dependency_links to kliff.egg-info/dependency_links.txt writing requirements to kliff.egg-info/requires.txt writing top-level names to kliff.egg-info/top_level.txt reading manifest file 'kliff.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' no previously-included directories found matching 'docs/build' warning: no previously-included files matching '.DS_Store' found anywhere in distribution warning: no previously-included files matching 'tmp_*' found anywhere in distribution writing manifest file 'kliff.egg-info/SOURCES.txt' Copying kliff.egg-info to /construction/science/py-kliff/stage/usr/local/lib/python3.7/site-packages/kliff-0.1.6-py3.7.egg-info running install_scripts copying build/scripts-3.7/kliff -> /construction/science/py-kliff/stage/usr/local/bin changing mode of /construction/science/py-kliff/stage/usr/local/bin/kliff to 755 writing list of installed files to '/construction/science/py-kliff/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.7/site-packages/kliff/descriptors/bispectrum/bs.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-kliff-0.1.6 file sizes/checksums [127]: 0% file sizes/checksums [127]: 78% file sizes/checksums [127]: 100% packing files [127]: 0% packing files [127]: 78% packing files [127]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:02:01