------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18.txz ===== Message from python27-2.7.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/py27-numpy-1.16.5_5,1.txz ===== Message from py27-numpy-1.16.5_5,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:28 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- /!\ py27-PyQuante-1.6.5_2: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- /!\ py27-PyQuante-1.6.5_2: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-PyQuante-1.6.5_2 for building SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- /!\ py27-PyQuante-1.6.5_2: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-PyQuante-1.6.5_2 for building => SHA256 Checksum OK for PyQuante-1.6.5.tar.gz. SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- /!\ py27-PyQuante-1.6.5_2: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-PyQuante-1.6.5_2 for building ===> Extracting for py27-PyQuante-1.6.5_2 => SHA256 Checksum OK for PyQuante-1.6.5.tar.gz. Extracted Memory Use: 3.64M SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-PyQuante-1.6.5_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-PyQuante-1.6.5_2 depends on package: py27-setuptools>0 - found ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-PyQuante-1.6.5_2 depends on package: py27-setuptools>0 - found ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-PyQuante-1.6.5_2 sh: Syntax error: Bad fd number /usr/local/lib/python2.7/distutils/dist.py:251: UserWarning: 'licence' distribution option is deprecated; use 'license' warnings.warn(msg) running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-PyQuante-1.6.5_2 sh: Syntax error: Bad fd number /usr/local/lib/python2.7/distutils/dist.py:251: UserWarning: 'licence' distribution option is deprecated; use 'license' warnings.warn(msg) running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-2.7 creating build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/DMP.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/qmmd.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/EN2.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/dft.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/CI.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/HFGF.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Lebedev.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Wavefunction.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/MINDO3.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/PyQuante2.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/hgp.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/OEP.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Minimizers.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/logger.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Slater.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/GridPoint.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/NEB.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Molecule.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/DFunctionals.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/pyints.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/MINDO3_Parameters.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/TestMolecules.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/MP.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/DFunctionalsOld.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Util.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Element.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/settings.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/CachedIntindex.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/AtomicGrid.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/hartree_fock.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Solvers.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/PGBF.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/leapfrog.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/ThomasFermi.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/NumWrap.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Dynamics.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/LA2.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Constants.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/MolecularGrid.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Bunch.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/fermi_dirac.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Legendre.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Defaults.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/pressure.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/MG2.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Ints.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Atom.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/optimize.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/rys.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/CGBF.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/rohf.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/Convergence.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/AnalyticDerivatives.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante copying PyQuante/force.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante creating build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311pp_3d_3p.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/sto3g.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpvdz.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/sto6g.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpvdz.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311pp_3df_3pd.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p321.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/dzvp.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpvqz.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpv6z.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p631ppss.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p631ss.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpv5z.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpvtz.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/basis.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpvtz.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/ccpvqz.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpv5z.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/Tools.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/augccpv6z.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311ss.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/lacvp.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p6311pp_2d_2p.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis copying PyQuante/Basis/p631.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis creating build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Data.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/XYZ.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Molf.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Matlab.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Jaguar.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Cube.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/PyQuanteBackend.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/OpenBabelBackend.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO copying PyQuante/IO/Handlers.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO creating build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/XYZ.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/HandlerList.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers copying PyQuante/IO/FormatHandlers/CML.py -> build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers running build_ext building 'PyQuante.cints' extension creating build/temp.dragonfly-5.9-x86_64-2.7 creating build/temp.dragonfly-5.9-x86_64-2.7/Src cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c Src/cints.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/cints.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/Src/cints.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/cints.so building 'PyQuante.chgp' extension cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c Src/chgp.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/chgp.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/Src/chgp.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/chgp.so building 'PyQuante.crys' extension cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c Src/crys.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/crys.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/Src/crys.o -L/usr/local/lib -lm -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/crys.so building 'PyQuante.contracted_gto' extension creating build/temp.dragonfly-5.9-x86_64-2.7/Src/PyQuante creating build/temp.dragonfly-5.9-x86_64-2.7/Src/lib creating build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/PyQuante/contracted_gto.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/PyQuante/contracted_gto.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/contracted-gto.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/contracted-gto.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/primitive-gto.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/primitive-gto.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/math.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/math.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/swap.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/swap.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/Src/PyQuante/contracted_gto.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/contracted-gto.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/primitive-gto.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/math.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/swap.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/contracted_gto.so building 'PyQuante.primitive_gto' extension cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/PyQuante/primitive_gto.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/PyQuante/primitive_gto.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/primitive-gto.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/primitive-gto.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/math.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/math.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/swap.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/swap.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/Src/PyQuante/primitive_gto.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/primitive-gto.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/math.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/swap.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/primitive_gto.so building 'PyQuante.shell' extension cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/PyQuante/shell.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/PyQuante/shell.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/shell.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/shell.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/contracted-gto.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/contracted-gto.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/primitive-gto.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/primitive-gto.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/math.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/math.o cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -ISrc/lib -I/usr/local/include/python2.7 -c Src/lib/utils/swap.c -o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/swap.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/Src/PyQuante/shell.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/shell.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/contracted-gto.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/primitive-gto.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/math.o build/temp.dragonfly-5.9-x86_64-2.7/Src/lib/utils/swap.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/shell.so SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-PyQuante-1.6.5_2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-PyQuante-1.6.5_2 depends on package: py27-setuptools>0 - found ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-PyQuante-1.6.5_2 ===> py27-PyQuante-1.6.5_2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-PyQuante-1.6.5_2 depends on package: py27-setuptools>0 - found ===> py27-PyQuante-1.6.5_2 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list sh: Syntax error: Bad fd number /usr/local/lib/python2.7/distutils/dist.py:251: UserWarning: 'licence' distribution option is deprecated; use 'license' warnings.warn(msg) running install running build running build_py running build_ext running install_lib creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7 creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/contracted_gto.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/cints.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/crys.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/NEB.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/DFunctionals.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/CachedIntindex.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/OEP.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/HFGF.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/TestMolecules.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/rohf.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Dynamics.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/force.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/GridPoint.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/DMP.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Util.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/pyints.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Molecule.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/MINDO3.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/ThomasFermi.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/logger.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/PyQuante2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/MINDO3_Parameters.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/dft.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/DFunctionalsOld.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/rys.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Lebedev.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/settings.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Slater.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Legendre.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Defaults.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/optimize.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/pressure.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Element.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Convergence.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/AtomicGrid.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Bunch.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/MG2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers/XYZ.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers/CML.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers/HandlerList.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/FormatHandlers/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/Molf.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/XYZ.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/OpenBabelBackend.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/Handlers.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/Jaguar.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/PyQuanteBackend.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/Cube.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/Data.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/Matlab.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/IO/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/leapfrog.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Minimizers.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/hgp.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Ints.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/MolecularGrid.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante creating /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/lacvp.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p631.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/ccpv6z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p321.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/basis.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/Tools.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p631ss.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/sto3g.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/sto6g.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/augccpv5z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p6311pp_2d_2p.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/dzvp.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/augccpvtz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p6311pp_3d_3p.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/ccpvtz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/ccpvqz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/ccpvdz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/augccpvdz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/__init__.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/augccpvqz.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/ccpv5z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p6311ss.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p631ppss.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/p6311pp_3df_3pd.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Basis/augccpv6z.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/PGBF.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/CI.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/CGBF.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/MP.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/hartree_fock.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Atom.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/NumWrap.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/AnalyticDerivatives.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/LA2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Constants.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Wavefunction.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/qmmd.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/Solvers.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/EN2.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/fermi_dirac.py -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/chgp.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/shell.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante copying build/lib.dragonfly-5.9-x86_64-2.7/PyQuante/primitive_gto.so -> /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/NEB.py to NEB.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/DFunctionals.py to DFunctionals.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/CachedIntindex.py to CachedIntindex.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/OEP.py to OEP.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/HFGF.py to HFGF.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/TestMolecules.py to TestMolecules.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/rohf.py to rohf.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Dynamics.py to Dynamics.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/force.py to force.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/GridPoint.py to GridPoint.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/DMP.py to DMP.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Util.py to Util.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/pyints.py to pyints.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Molecule.py to Molecule.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MINDO3.py to MINDO3.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/ThomasFermi.py to ThomasFermi.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/logger.py to logger.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/PyQuante2.py to PyQuante2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MINDO3_Parameters.py to MINDO3_Parameters.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/dft.py to dft.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/DFunctionalsOld.py to DFunctionalsOld.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/rys.py to rys.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Lebedev.py to Lebedev.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/settings.py to settings.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Slater.py to Slater.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Legendre.py to Legendre.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Defaults.py to Defaults.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/optimize.py to optimize.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/pressure.py to pressure.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Element.py to Element.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Convergence.py to Convergence.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/AtomicGrid.py to AtomicGrid.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Bunch.py to Bunch.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MG2.py to MG2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/XYZ.py to XYZ.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/CML.py to CML.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/HandlerList.py to HandlerList.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/FormatHandlers/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Molf.py to Molf.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/XYZ.py to XYZ.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/OpenBabelBackend.py to OpenBabelBackend.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Handlers.py to Handlers.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Jaguar.py to Jaguar.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/PyQuanteBackend.py to PyQuanteBackend.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Cube.py to Cube.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Data.py to Data.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/Matlab.py to Matlab.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/IO/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/leapfrog.py to leapfrog.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Minimizers.py to Minimizers.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/hgp.py to hgp.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Ints.py to Ints.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MolecularGrid.py to MolecularGrid.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/lacvp.py to lacvp.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p631.py to p631.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpv6z.py to ccpv6z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p321.py to p321.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/basis.py to basis.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/Tools.py to Tools.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p631ss.py to p631ss.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/sto3g.py to sto3g.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/sto6g.py to sto6g.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpv5z.py to augccpv5z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311pp_2d_2p.py to p6311pp_2d_2p.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/dzvp.py to dzvp.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpvtz.py to augccpvtz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311pp_3d_3p.py to p6311pp_3d_3p.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpvtz.py to ccpvtz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpvqz.py to ccpvqz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpvdz.py to ccpvdz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpvdz.py to augccpvdz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/__init__.py to __init__.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpvqz.py to augccpvqz.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/ccpv5z.py to ccpv5z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311ss.py to p6311ss.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p631ppss.py to p631ppss.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/p6311pp_3df_3pd.py to p6311pp_3df_3pd.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Basis/augccpv6z.py to augccpv6z.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/PGBF.py to PGBF.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/CI.py to CI.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/CGBF.py to CGBF.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/MP.py to MP.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/hartree_fock.py to hartree_fock.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Atom.py to Atom.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/NumWrap.py to NumWrap.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/AnalyticDerivatives.py to AnalyticDerivatives.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/LA2.py to LA2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Constants.py to Constants.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Wavefunction.py to Wavefunction.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/qmmd.py to qmmd.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/Solvers.py to Solvers.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/EN2.py to EN2.pyc byte-compiling /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante/fermi_dirac.py to fermi_dirac.pyc writing byte-compilation script '/tmp/tmpHRpCiZ.py' /usr/local/bin/python2.7 -O /tmp/tmpHRpCiZ.py removing /tmp/tmpHRpCiZ.py running install_egg_info running egg_info creating PyQuante.egg-info writing PyQuante.egg-info/PKG-INFO writing top-level names to PyQuante.egg-info/top_level.txt writing dependency_links to PyQuante.egg-info/dependency_links.txt writing manifest file 'PyQuante.egg-info/SOURCES.txt' reading manifest file 'PyQuante.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'Doc/*.html' writing manifest file 'PyQuante.egg-info/SOURCES.txt' Copying PyQuante.egg-info to /construction/science/py-PyQuante/stage/usr/local/lib/python2.7/site-packages/PyQuante-1.6.5-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-PyQuante/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python2.7/site-packages/PyQuante/shell.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/PyQuante/contracted_gto.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/PyQuante/chgp.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/PyQuante/cints.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/PyQuante/primitive_gto.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Warning: 'lib/python2.7/site-packages/PyQuante/crys.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python2.7/site-packages/PyQuante/chgp.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-PyQuante-1.6.5_2 file sizes/checksums [292]: 0% file sizes/checksums [292]: 34% file sizes/checksums [292]: 68% file sizes/checksums [292]: 100% packing files [292]: 0% packing files [292]: 34% packing files [292]: 68% packing files [292]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:05 TOTAL TIME 00:01:28