------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/aom-2.0.0.r1.txz Installing /packages/All/freetype2-2.10.1.txz ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/fribidi-0.19.7.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/pcre-8.43_2.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libiconv-1.14_11.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.7.txz ===== Message from python37-3.7.7: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.56.3_7,1.txz No schema files found: doing nothing. Installing /packages/All/harfbuzz-2.6.5.txz Installing /packages/All/libass-0.14.0.txz Installing /packages/All/dav1d-0.6.0_1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/nettle-3.5.1_1.txz Installing /packages/All/libtasn1-4.16.0.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/ca_root_nss-3.52.txz ===== Message from ca_root_nss-3.52: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/p11-kit-0.23.20.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_2.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.13.txz Installing /packages/All/opencv-core-3.4.1_31.txz ===== Message from opencv-core-3.4.1_31: -- ===> NOTICE: The opencv-core port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/opus-1.3.1.txz Installing /packages/All/libogg-1.3.4,4.txz Installing /packages/All/libvorbis-1.3.6,3.txz Installing /packages/All/libtheora-1.1.1_7.txz Installing /packages/All/argp-standalone-1.3_4.txz ===== Message from argp-standalone-1.3_4: -- ===> NOTICE: The argp-standalone port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/libudev-devd-0.4.2.txz Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/libv4l-1.18.0.txz Installing /packages/All/pciids-20200421.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/wayland-1.18.0.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9_1,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libva-2.7.1.txz Installing /packages/All/libvdpau-1.3_1.txz Installing /packages/All/libvpx-1.8.2_1.txz Installing /packages/All/libx264-0.159.2999.txz Installing /packages/All/x265-3.2.1_2.txz Installing /packages/All/xvid-1.3.7,1.txz Installing /packages/All/ffmpeg-4.2.2_17,1.txz Installing /packages/All/libnghttp2-1.40.0.txz Installing /packages/All/curl-7.70.0.txz Installing /packages/All/jsoncpp-1.9.2.txz Installing /packages/All/libuv-1.37.0.txz Installing /packages/All/rhash-1.3.9.txz Installing /packages/All/liblz4-1.9.2_1,1.txz Installing /packages/All/lzo2-2.10_1.txz Installing /packages/All/libarchive-3.4.2,1.txz Installing /packages/All/cmake-3.17.2.txz Installing /packages/All/eigen-3.3.7.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/pkgconf-1.6.3,1.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/fftw3-3.3.8_6.txz Installing /packages/All/hdf-szip-2.1.1.txz Installing /packages/All/hdf5-1.10.6,1.txz Installing /packages/All/kim-api-2.1.3.txz Installing /packages/All/kokkos-3.1.01.txz Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/latte-1.2.2.txz Installing /packages/All/bash-5.0.17.txz Installing /packages/All/plumed-2.6.0.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/voro++-0.4.6_1.txz Installing /packages/All/openkim-models-2019.07.25.txz UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:31 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> lammps-2020.05.5_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> lammps-2020.05.5_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by lammps-2020.05.5_1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> lammps-2020.05.5_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by lammps-2020.05.5_1 for building => SHA256 Checksum OK for lammps-lammps-2020.05.5-patch_5May2020_GH0.tar.gz. SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> lammps-2020.05.5_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by lammps-2020.05.5_1 for building ===> Extracting for lammps-2020.05.5_1 ===> lammps-2020.05.5_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by lammps-2020.05.5_1 for building => SHA256 Checksum OK for lammps-lammps-2020.05.5-patch_5May2020_GH0.tar.gz. Extracted Memory Use: 430.11M SUCCEEDED 00:00:13 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for lammps-2020.05.5_1 ===> Applying ports patches for lammps-2020.05.5_1 ===> Cleanly applied ports patch(es) patch-cmake_CMakeLists.txt patch-lib_message_cslib_src_cslib__wrap.h SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> lammps-2020.05.5_1 depends on executable: ffmpeg - found ===> lammps-2020.05.5_1 depends on file: /usr/local/bin/cmake - found ===> lammps-2020.05.5_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> lammps-2020.05.5_1 depends on executable: gfortran8 - found ===> lammps-2020.05.5_1 depends on package: pkgconf>=1.3.0_1 - found ===> lammps-2020.05.5_1 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> lammps-2020.05.5_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> lammps-2020.05.5_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> lammps-2020.05.5_1 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) ===> lammps-2020.05.5_1 depends on shared library: libkim-api.so - found (/usr/local/lib/libkim-api.so) ===> lammps-2020.05.5_1 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so) ===> lammps-2020.05.5_1 depends on shared library: libkokkoscore.so - found (/usr/local/lib/libkokkoscore.so) ===> lammps-2020.05.5_1 depends on shared library: liblatte.so - found (/usr/local/lib/liblatte.so) ===> lammps-2020.05.5_1 depends on shared library: libplumed.so - found (/usr/local/lib/libplumed.so) ===> lammps-2020.05.5_1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> lammps-2020.05.5_1 depends on shared library: libvoro++.so - found (/usr/local/lib/libvoro++.so) ===> lammps-2020.05.5_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> lammps-2020.05.5_1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> lammps-2020.05.5_1 depends on executable: ffmpeg - found ===> lammps-2020.05.5_1 depends on file: /usr/local/bin/cmake - found ===> lammps-2020.05.5_1 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> lammps-2020.05.5_1 depends on executable: gfortran8 - found ===> lammps-2020.05.5_1 depends on package: pkgconf>=1.3.0_1 - found ===> lammps-2020.05.5_1 depends on file: /usr/local/bin/as - found ===> lammps-2020.05.5_1 depends on shared library: libfftw3.so - found (/usr/local/lib/libfftw3.so) ===> lammps-2020.05.5_1 depends on shared library: libhdf5.so - found (/usr/local/lib/libhdf5.so) ===> lammps-2020.05.5_1 depends on shared library: libsz.so - found (/usr/local/lib/libsz.so) ===> lammps-2020.05.5_1 depends on shared library: libkim-api.so - found (/usr/local/lib/libkim-api.so) ===> lammps-2020.05.5_1 depends on shared library: libcurl.so - found (/usr/local/lib/libcurl.so) ===> lammps-2020.05.5_1 depends on shared library: libkokkoscore.so - found (/usr/local/lib/libkokkoscore.so) ===> lammps-2020.05.5_1 depends on shared library: liblatte.so - found (/usr/local/lib/liblatte.so) ===> lammps-2020.05.5_1 depends on shared library: libplumed.so - found (/usr/local/lib/libplumed.so) ===> lammps-2020.05.5_1 depends on shared library: libpng.so - found (/usr/local/lib/libpng.so) ===> lammps-2020.05.5_1 depends on shared library: libvoro++.so - found (/usr/local/lib/libvoro++.so) ===> lammps-2020.05.5_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> lammps-2020.05.5_1 depends on shared library: libjpeg.so - found (/usr/local/lib/libjpeg.so) ===> Configuring for lammps-2020.05.5_1 ===> Performing out-of-source build /bin/mkdir -p /construction/science/lammps/.build -- The CXX compiler identification is GNU 8.3.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Running check for auto-generated files from make-based build system -- The C compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Looking for C++ include omp.h -- Looking for C++ include omp.h - found -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Looking for sgemm_ -- Looking for sgemm_ - found -- Found BLAS: /usr/local/lib/libopenblas.so -- Looking for cheev_ -- Looking for cheev_ - found -- A library with LAPACK API found. -- Found JPEG: /usr/local/lib/libjpeg.so (found version "80") -- Found PNG: /usr/local/lib/libpng.so (found version "1.6.37+apng") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.11") -- Found GZIP: /usr/bin/gzip -- Found FFMPEG: /usr/local/bin/ffmpeg -- Found PkgConfig: pkgconf (found version "1.6.3") -- Checking for module 'fftw3' -- Found fftw3, version 3.3.8 -- Found FFTW3: /usr/local/lib/libfftw3.so -- Found VORO: /usr/local/lib/libvoro++.so -- Checking for module 'plumed' -- Found plumed, version 2.6.0 -- Found CURL: /usr/local/lib/libcurl.so (found version "7.70.0") -- Checking for module 'libkim-api>=2.1.3' -- Found libkim-api, version 2.1.3 -- The Fortran compiler identification is GNU 8.4.0 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 -- Check for working Fortran compiler: /usr/local/bin/gfortran8 - works -- Detecting Fortran compiler ABI info -- Detecting Fortran compiler ABI info - done -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 -- Checking whether /usr/local/bin/gfortran8 supports Fortran 90 - yes -- Found LATTE: /usr/local/lib/liblatte.so -- Performing Test COMPILER_SUPPORTS-ffast-math -- Performing Test COMPILER_SUPPORTS-ffast-math - Success -- Looking for C++ include cmath -- Looking for C++ include cmath - found -- HDF5: Using hdf5 compiler wrapper to determine C configuration -- Found HDF5: /usr/local/lib/libhdf5.so;/usr/local/lib/libsz.so;/usr/lib/libz.so;/usr/lib/libdl.so;/usr/lib/libm.so (found version "1.10.6") -- Enabled Kokkos devices: SERIAL -- Generating style_angle.h... -- Generating style_atom.h... -- Generating style_body.h... -- Generating style_bond.h... -- Generating style_command.h... -- Generating style_compute.h... -- Generating style_dihedral.h... -- Generating style_dump.h... -- Generating style_fix.h... -- Generating style_improper.h... -- Generating style_integrate.h... -- Generating style_kspace.h... -- Generating style_minimize.h... -- Generating style_nbin.h... -- Generating style_npair.h... -- Generating style_nstencil.h... -- Generating style_ntopo.h... -- Generating style_pair.h... -- Generating style_reader.h... -- Generating style_region.h... -- Generating packages_angle.h... -- Generating packages_atom.h... -- Generating packages_body.h... -- Generating packages_bond.h... -- Generating packages_command.h... -- Generating packages_compute.h... -- Generating packages_dihedral.h... -- Generating packages_dump.h... -- Generating packages_fix.h... -- Generating packages_improper.h... -- Generating packages_integrate.h... -- Generating packages_kspace.h... -- Generating packages_minimize.h... -- Generating packages_nbin.h... -- Generating packages_npair.h... -- Generating packages_nstencil.h... -- Generating packages_ntopo.h... -- Generating packages_pair.h... -- Generating packages_reader.h... -- Generating packages_region.h... -- Generating lmpinstalledpkgs.h... -- Found Python: /usr/local/bin/python3.7 (found version "3.7.7") found components: Interpreter -- Building package: ASPHERE -- Building package: BODY -- Building package: CLASS2 -- Building package: COLLOID -- Building package: COMPRESS -- Building package: DIPOLE -- Building package: GRANULAR -- Building package: KSPACE -- Building package: LATTE -- Building package: MANYBODY -- Building package: MC -- Building package: MESSAGE -- Building package: MISC -- Building package: MOLECULE -- Building package: PERI -- Building package: POEMS -- Building package: QEQ -- Building package: REPLICA -- Building package: RIGID -- Building package: SHOCK -- Building package: SPIN -- Building package: SNAP -- Building package: SRD -- Building package: KIM -- Building package: VORONOI -- Building package: USER-ATC -- Building package: USER-AWPMD -- Building package: USER-BOCS -- Building package: USER-CGDNA -- Building package: USER-MESODPD -- Building package: USER-CGSDK -- Building package: USER-COLVARS -- Building package: USER-DIFFRACTION -- Building package: USER-DPD -- Building package: USER-DRUDE -- Building package: USER-EFF -- Building package: USER-FEP -- Building package: USER-H5MD -- Building package: USER-MANIFOLD -- Building package: USER-MEAMC -- Building package: USER-MGPT -- Building package: USER-MISC -- Building package: USER-MOFFF -- Building package: USER-MOLFILE -- Building package: USER-PHONON -- Building package: USER-PLUMED -- Building package: USER-PTM -- Building package: USER-QTB -- Building package: USER-REACTION -- Building package: USER-REAXC -- Building package: USER-SDPD -- Building package: USER-SMD -- Building package: USER-SMTBQ -- Building package: USER-SPH -- Building package: USER-TALLY -- Building package: USER-UEF -- Building package: USER-QMMM -- Building package: USER-YAFF -- Building package: KOKKOS -- The following tools and libraries have been found and configured: * OpenMP * LAPACK * BLAS * JPEG * PNG * FFTW3 * VORO * Eigen3 * CURL * PkgConfig * LATTE * ZLIB * HDF5 * Kokkos (required version >= 3.1) * Python -- <<< Build configuration >>> Build type: Release Install path: /usr/local Generator: Unix Makefiles using /usr/bin/make -- <<< Compilers and Flags: >>> -- C++ Compiler: /usr/bin/c++ Type: GNU Version: 8.3.0 C++ Flags: -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include Defines: LAMMPS_SMALLBIG;LAMMPS_MEMALIGN=64;LAMMPS_OMP_COMPAT=3;LAMMPS_JPEG;LAMMPS_PNG;LAMMPS_GZIP;LAMMPS_FFMPEG;FFT_FFTW3;LMP_KIM_CURL;LMP_KOKKOS Options: -ffast-math -- Fortran Compiler: /usr/local/bin/gfortran8 Type: GNU Version: 8.4.0 Fortran Flags:-O -Wl,-rpath=/usr/local/lib/gcc8 -O3 -DNDEBUG -O3 -- C compiler: /usr/bin/cc Type: GNU Version: 8.3.0 C Flags: -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -pipe -O2 -isystem /usr/local/include -fno-strict-aliasing -- <<< Linker flags: >>> -- Executable name: lmp -- Executable linker flags: -lexecinfo -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -- Shared library flags: -lexecinfo -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -- Kokkos Arch: -- <<< FFT settings >>> -- Primary FFT lib: FFTW3 -- Using double precision FFTs -- Using non-threaded FFTs -- Kokkos FFT: FFTW3 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/science/lammps/.build SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for lammps-2020.05.5_1 /usr/local/bin/cmake -S/construction/science/lammps/lammps-patch_5May2020/cmake -B/construction/science/lammps/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/science/lammps/.build/CMakeFiles /construction/science/lammps/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/qmmm.dir/all --- --- CMakeFiles/awpmd.dir/all --- --- CMakeFiles/poems.dir/all --- --- CMakeFiles/neigh_list.h.dir/all --- --- CMakeFiles/output.h.dir/all --- --- CMakeFiles/pointers.h.dir/all --- --- CMakeFiles/neighbor.h.dir/all --- --- CMakeFiles/timer.h.dir/all --- --- CMakeFiles/input.h.dir/all --- --- CMakeFiles/comm.h.dir/all --- --- CMakeFiles/qmmm.dir/all --- /usr/bin/make -f CMakeFiles/qmmm.dir/build.make CMakeFiles/qmmm.dir/depend --- CMakeFiles/awpmd.dir/all --- /usr/bin/make -f CMakeFiles/awpmd.dir/build.make CMakeFiles/awpmd.dir/depend --- CMakeFiles/awpmd.dir/depend --- cd /construction/science/lammps/.build && /usr/local/bin/cmake -E cmake_depends "Unix Makefiles" /construction/science/lammps/lammps-patch_5May2020/cmake /construction/science/lammps/lammps-patch_5May2020/cmake /construction/science/lammps/.build /construction/science/lammps/.build /construction/science/lammps/.build/CMakeFiles/awpmd.dir/DependInfo.cmake --- CMakeFiles/poems.dir/all --- /usr/bin/make -f CMakeFiles/poems.dir/build.make 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/construction/science/lammps/stage/usr/local/share/lammps/potentials/Au_u3.eam -- Installing: /construction/science/lammps/stage/usr/local/share/lammps/potentials/Ag_u3.eam -- Installing: /construction/science/lammps/stage/usr/local/share/lammps/potentials/Al_zhou.eam.alloy -- Installing: /construction/science/lammps/stage/usr/local/etc/profile.d/lammps.sh -- Installing: /construction/science/lammps/stage/usr/local/etc/profile.d/lammps.csh -- Installing: /construction/science/lammps/stage/usr/local/lib/python3.7/site-packages/lammps.py ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/liblammps.so.0 is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/liblammps.so.0 is linked to /usr/local/lib/libssl.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/liblammps.so.0 is linked to /usr/local/lib/libcrypto.so.11 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:18 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for lammps-2020.05.5_1 file sizes/checksums [250]: 0% file sizes/checksums [250]: 40% file sizes/checksums [250]: 80% file sizes/checksums [250]: 100% packing files [250]: 0% packing files [250]: 40% packing files [250]: 80% packing files [250]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:04:06 TOTAL TIME 00:17:19