------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/pkgconf-1.6.3,1.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/m4-1.4.18_1,1.txz Installing /packages/All/autoconf-wrapper-20131203.txz Installing /packages/All/perl5-5.30.2.txz ===== Message from perl5-5.30.2: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/autoconf-2.69_3.txz Installing /packages/All/automake-1.16.2.txz Installing /packages/All/libtool-2.4.6_1.txz Installing /packages/All/libxml2-2.9.10.txz SUCCEEDED 00:00:16 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> ghmm-0.9.r3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> ghmm-0.9.r3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by ghmm-0.9.r3 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> ghmm-0.9.r3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by ghmm-0.9.r3 for building => SHA256 Checksum OK for ghmm-0.9-rc3.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: The ghmm port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> ghmm-0.9.r3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by ghmm-0.9.r3 for building ===> Extracting for ghmm-0.9.r3 => SHA256 Checksum OK for ghmm-0.9-rc3.tar.gz. Extracted Memory Use: 3.62M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for ghmm-0.9.r3 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> ghmm-0.9.r3 depends on package: pkgconf>=1.3.0_1 - found ===> ghmm-0.9.r3 depends on package: autoconf>=2.69 - found ===> ghmm-0.9.r3 depends on package: automake>=1.16.1 - found ===> ghmm-0.9.r3 depends on executable: libtoolize - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> ghmm-0.9.r3 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> ghmm-0.9.r3 depends on package: pkgconf>=1.3.0_1 - found ===> ghmm-0.9.r3 depends on package: autoconf>=2.69 - found ===> ghmm-0.9.r3 depends on package: automake>=1.16.1 - found ===> ghmm-0.9.r3 depends on executable: libtoolize - found ===> ghmm-0.9.r3 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Configuring for ghmm-0.9.r3 aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: Consider adding 'AC_CONFIG_MACRO_DIRS([m4])' to configure.in, libtoolize: and rerunning libtoolize and aclocal. libtoolize: Consider adding '-I m4' to ACLOCAL_AMFLAGS in Makefile.am. aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:62: installing './compile' configure.in:49: installing './missing' ghmm/Makefile.am:77: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' ghmm/Makefile.am: installing './depcomp' tests/Makefile.am:51: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') parallel-tests: installing './test-driver' tools/Makefile.am:48: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') configure: loading site script /xports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking whether cc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of cc... gcc3 checking build system type... x86_64-portbld-dragonfly5.9 checking host system type... x86_64-portbld-dragonfly5.9 checking how to print strings... printf checking for a sed that does not truncate output... (cached) /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for fgrep... (cached) /usr/bin/fgrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... (cached) 262144 checking how to convert x86_64-portbld-dragonfly5.9 file names to x86_64-portbld-dragonfly5.9 format... func_convert_file_noop checking how to convert x86_64-portbld-dragonfly5.9 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from cc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... mt checking if mt is a manifest tool... no checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking for objdir... .libs checking if cc supports -fno-rtti -fno-exceptions... no checking for cc option to produce PIC... -fPIC -DPIC checking if cc PIC flag -fPIC -DPIC works... yes checking if cc static flag -static works... yes checking if cc supports -c -o file.o... yes checking if cc supports -c -o file.o... (cached) yes checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... dragonfly5.9 ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for gawk... (cached) /usr/bin/awk checking for doxygen... no checking for rm... /bin/rm checking for pkg-config... /usr/local/bin/pkg-config checking for expect... no checking for runtest... no configure: obsolete features disabled configure: unsupported features disabled checking for pthread_join in -lpthread... yes checking for ANSI C header files... (cached) yes checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for sqrt in -lm... yes checking for exp in -lm... yes checking for pow in -lm... yes configure: "not using gsl" checking for cos in -lm... yes configure: "not using diagonal covariance matrix hack" configure: "not using lapack" configure: using internal Mersenne-Twister random number generator checking libxml2 version... ... ok checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating ghmm/Makefile config.status: creating ghmm/ghmmconfig.h config.status: creating tools/Makefile config.status: creating tests/Makefile config.status: creating tests/data/Makefile config.status: creating tools/ghmm-config config.status: creating ghmmwrapper/Makefile config.status: creating HMMEd/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands rm: libtoolT: No such file or directory SUCCEEDED 00:00:23 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for ghmm-0.9.r3 --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in ghmm --- all-recursive --- Making all in . --- rng.lo --- --- randvar.lo --- --- matrixop.lo --- --- gauss_tail.lo --- --- mes.lo --- --- ghmm_internals.lo --- --- mprintf.lo --- --- vector.lo --- --- matrix.lo --- --- scanner.lo --- --- rng.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c -o rng.lo rng.c --- randvar.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c -o randvar.lo randvar.c --- matrixop.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrixop.lo -MD -MP -MF .deps/matrixop.Tpo -c -o matrixop.lo matrixop.c --- gauss_tail.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c -o gauss_tail.lo gauss_tail.c --- mes.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c -o mes.lo mes.c --- ghmm_internals.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT ghmm_internals.lo -MD -MP -MF .deps/ghmm_internals.Tpo -c -o ghmm_internals.lo ghmm_internals.c --- mprintf.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c -o mprintf.lo mprintf.c --- vector.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c -o vector.lo vector.c --- matrix.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.c --- scanner.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c -o scanner.lo scanner.c --- mprintf.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c mprintf.c -fPIC -DPIC -o .libs/mprintf.o --- vector.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c vector.c -fPIC -DPIC -o .libs/vector.o --- ghmm_internals.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT ghmm_internals.lo -MD -MP -MF .deps/ghmm_internals.Tpo -c ghmm_internals.c -fPIC -DPIC -o .libs/ghmm_internals.o --- rng.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c rng.c -fPIC -DPIC -o .libs/rng.o --- ghmm_internals.lo --- In function 'process_external_log', inlined from 'ighmm_log_out' at ghmm_internals.c:83:5: ghmm_internals.c:68:17: warning: 'strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] message = strncpy(message, proc, proc_len+1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ghmm_internals.c: In function 'ighmm_log_out': ghmm_internals.c:63:18: note: length computed here int proc_len = strlen(proc); ^~~~~~~~~~~~ In function 'process_external_log', inlined from 'ighmm_log_out' at ghmm_internals.c:83:5: ghmm_internals.c:69:17: warning: 'strncat' specified bound depends on the length of the source argument [-Wstringop-overflow=] message = strncat(message, error_str, slen); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ghmm_internals.c: In function 'ighmm_log_out': ghmm_internals.c:64:14: note: length computed here int slen = strlen(error_str); ^~~~~~~~~~~~~~~~~ --- mes.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c mes.c -fPIC -DPIC -o .libs/mes.o --- gauss_tail.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c gauss_tail.c -fPIC -DPIC -o .libs/gauss_tail.o --- ghmm_internals.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT ghmm_internals.lo -MD -MP -MF .deps/ghmm_internals.Tpo -c ghmm_internals.c -o ghmm_internals.o >/dev/null 2>&1 --- matrixop.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrixop.lo -MD -MP -MF .deps/matrixop.Tpo -c matrixop.c -fPIC -DPIC -o .libs/matrixop.o --- vector.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT vector.lo -MD -MP -MF .deps/vector.Tpo -c vector.c -o vector.o >/dev/null 2>&1 --- rng.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT rng.lo -MD -MP -MF .deps/rng.Tpo -c rng.c -o rng.o >/dev/null 2>&1 --- ghmm_internals.lo --- mv -f .deps/ghmm_internals.Tpo .deps/ghmm_internals.Plo --- linkedlist.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT linkedlist.lo -MD -MP -MF .deps/linkedlist.Tpo -c -o linkedlist.lo linkedlist.c --- matrix.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -fPIC -DPIC -o .libs/matrix.o --- randvar.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c randvar.c -fPIC -DPIC -o .libs/randvar.o --- rng.lo --- mv -f .deps/rng.Tpo .deps/rng.Plo --- sequence.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c -o sequence.lo sequence.c --- scanner.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c scanner.c -fPIC -DPIC -o .libs/scanner.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scanner.lo -MD -MP -MF .deps/scanner.Tpo -c scanner.c -o scanner.o >/dev/null 2>&1 --- gauss_tail.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gauss_tail.lo -MD -MP -MF .deps/gauss_tail.Tpo -c gauss_tail.c -o gauss_tail.o >/dev/null 2>&1 --- scanner.lo --- mv -f .deps/scanner.Tpo .deps/scanner.Plo --- psequence.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c -o psequence.lo psequence.c --- matrixop.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrixop.lo -MD -MP -MF .deps/matrixop.Tpo -c matrixop.c -o matrixop.o >/dev/null 2>&1 --- vector.lo --- mv -f .deps/vector.Tpo .deps/vector.Plo --- sequence.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c sequence.c -fPIC -DPIC -o .libs/sequence.o --- gauss_tail.lo --- mv -f .deps/gauss_tail.Tpo .deps/gauss_tail.Plo --- matrix.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.c -o matrix.o >/dev/null 2>&1 --- mprintf.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mprintf.lo -MD -MP -MF .deps/mprintf.Tpo -c mprintf.c -o mprintf.o >/dev/null 2>&1 --- xmlreader.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlreader.lo -MD -MP -MF .deps/xmlreader.Tpo -c -o xmlreader.lo xmlreader.c --- xmlwriter.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlwriter.lo -MD -MP -MF .deps/xmlwriter.Tpo -c -o xmlwriter.lo xmlwriter.c --- psequence.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c psequence.c -fPIC -DPIC -o .libs/psequence.o --- linkedlist.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT linkedlist.lo -MD -MP -MF .deps/linkedlist.Tpo -c linkedlist.c -fPIC -DPIC -o .libs/linkedlist.o --- xmlreader.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlreader.lo -MD -MP -MF .deps/xmlreader.Tpo -c xmlreader.c -fPIC -DPIC -o .libs/xmlreader.o --- linkedlist.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT linkedlist.lo -MD -MP -MF .deps/linkedlist.Tpo -c linkedlist.c -o linkedlist.o >/dev/null 2>&1 --- psequence.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT psequence.lo -MD -MP -MF .deps/psequence.Tpo -c psequence.c -o psequence.o >/dev/null 2>&1 --- randvar.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar.lo -MD -MP -MF .deps/randvar.Tpo -c randvar.c -o randvar.o >/dev/null 2>&1 --- linkedlist.lo --- mv -f .deps/linkedlist.Tpo .deps/linkedlist.Plo --- model.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT model.lo -MD -MP -MF .deps/model.Tpo -c -o model.lo model.c --- matrixop.lo --- mv -f .deps/matrixop.Tpo .deps/matrixop.Plo --- foba.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c -o foba.lo foba.c --- xmlwriter.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlwriter.lo -MD -MP -MF .deps/xmlwriter.Tpo -c xmlwriter.c -fPIC -DPIC -o .libs/xmlwriter.o --- psequence.lo --- mv -f .deps/psequence.Tpo .deps/psequence.Plo --- viterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c -o viterbi.lo viterbi.c --- foba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c foba.c -fPIC -DPIC -o .libs/foba.o --- matrix.lo --- mv -f .deps/matrix.Tpo .deps/matrix.Plo --- reestimate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c -o reestimate.lo reestimate.c --- mprintf.lo --- mv -f .deps/mprintf.Tpo .deps/mprintf.Plo --- viterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c viterbi.c -fPIC -DPIC -o .libs/viterbi.o --- model.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c -fPIC -DPIC -o .libs/model.o --- gradescent.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c -o gradescent.lo gradescent.c --- reestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c reestimate.c -fPIC -DPIC -o .libs/reestimate.o --- gradescent.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c gradescent.c -fPIC -DPIC -o .libs/gradescent.o --- randvar.lo --- mv -f .deps/randvar.Tpo .deps/randvar.Plo --- kbest.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c -o kbest.lo kbest.c libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c kbest.c -fPIC -DPIC -o .libs/kbest.o --- mes.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mes.lo -MD -MP -MF .deps/mes.Tpo -c mes.c -o mes.o >/dev/null 2>&1 --- viterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT viterbi.lo -MD -MP -MF .deps/viterbi.Tpo -c viterbi.c -o viterbi.o >/dev/null 2>&1 --- gradescent.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT gradescent.lo -MD -MP -MF .deps/gradescent.Tpo -c gradescent.c -o gradescent.o >/dev/null 2>&1 --- kbest.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT kbest.lo -MD -MP -MF .deps/kbest.Tpo -c kbest.c -o kbest.o >/dev/null 2>&1 --- mes.lo --- mv -f .deps/mes.Tpo .deps/mes.Plo --- discrime.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c -o discrime.lo discrime.c --- viterbi.lo --- mv -f .deps/viterbi.Tpo .deps/viterbi.Plo --- modelutil.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c -o modelutil.lo modelutil.c --- discrime.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c discrime.c -fPIC -DPIC -o .libs/discrime.o --- modelutil.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c modelutil.c -fPIC -DPIC -o .libs/modelutil.o --- xmlreader.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlreader.lo -MD -MP -MF .deps/xmlreader.Tpo -c xmlreader.c -o xmlreader.o >/dev/null 2>&1 --- xmlwriter.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT xmlwriter.lo -MD -MP -MF .deps/xmlwriter.Tpo -c xmlwriter.c -o xmlwriter.o >/dev/null 2>&1 --- kbest.lo --- mv -f .deps/kbest.Tpo .deps/kbest.Plo --- cluster.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c -o cluster.lo cluster.c --- gradescent.lo --- mv -f .deps/gradescent.Tpo .deps/gradescent.Plo --- root_finder.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c -o root_finder.lo root_finder.c --- cluster.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c cluster.c -fPIC -DPIC -o .libs/cluster.o libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.lo -MD -MP -MF .deps/cluster.Tpo -c cluster.c -o cluster.o >/dev/null 2>&1 --- modelutil.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT modelutil.lo -MD -MP -MF .deps/modelutil.Tpo -c modelutil.c -o modelutil.o >/dev/null 2>&1 --- cluster.lo --- mv -f .deps/cluster.Tpo .deps/cluster.Plo --- smodel.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c -o smodel.lo smodel.c --- root_finder.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c root_finder.c -fPIC -DPIC -o .libs/root_finder.o --- reestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT reestimate.lo -MD -MP -MF .deps/reestimate.Tpo -c reestimate.c -o reestimate.o >/dev/null 2>&1 --- smodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c smodel.c -fPIC -DPIC -o .libs/smodel.o --- root_finder.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder.lo -MD -MP -MF .deps/root_finder.Tpo -c root_finder.c -o root_finder.o >/dev/null 2>&1 --- modelutil.lo --- mv -f .deps/modelutil.Tpo .deps/modelutil.Plo --- sfoba.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c -o sfoba.lo sfoba.c --- root_finder.lo --- mv -f .deps/root_finder.Tpo .deps/root_finder.Plo --- sviterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c -o sviterbi.lo sviterbi.c --- sequence.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequence.lo -MD -MP -MF .deps/sequence.Tpo -c sequence.c -o sequence.o >/dev/null 2>&1 --- sfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c sfoba.c -fPIC -DPIC -o .libs/sfoba.o --- sviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c sviterbi.c -fPIC -DPIC -o .libs/sviterbi.o --- foba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT foba.lo -MD -MP -MF .deps/foba.Tpo -c foba.c -o foba.o >/dev/null 2>&1 --- sviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sviterbi.lo -MD -MP -MF .deps/sviterbi.Tpo -c sviterbi.c -o sviterbi.o >/dev/null 2>&1 --- sfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sfoba.lo -MD -MP -MF .deps/sfoba.Tpo -c sfoba.c -o sfoba.o >/dev/null 2>&1 --- sviterbi.lo --- mv -f .deps/sviterbi.Tpo .deps/sviterbi.Plo --- sreestimate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c -o sreestimate.lo sreestimate.c --- xmlreader.lo --- mv -f .deps/xmlreader.Tpo .deps/xmlreader.Plo --- scluster.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c -o scluster.lo scluster.c --- model.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT model.lo -MD -MP -MF .deps/model.Tpo -c model.c -o model.o >/dev/null 2>&1 --- scluster.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c scluster.c -fPIC -DPIC -o .libs/scluster.o --- sreestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c sreestimate.c -fPIC -DPIC -o .libs/sreestimate.o --- sfoba.lo --- mv -f .deps/sfoba.Tpo .deps/sfoba.Plo --- sgenerate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c -o sgenerate.lo sgenerate.c --- scluster.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.lo -MD -MP -MF .deps/scluster.Tpo -c scluster.c -o scluster.o >/dev/null 2>&1 mv -f .deps/scluster.Tpo .deps/scluster.Plo --- smixturehmm.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c -o smixturehmm.lo smixturehmm.c --- sgenerate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c sgenerate.c -fPIC -DPIC -o .libs/sgenerate.o --- xmlwriter.lo --- mv -f .deps/xmlwriter.Tpo .deps/xmlwriter.Plo --- smap_classify.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c -o smap_classify.lo smap_classify.c --- smixturehmm.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c smixturehmm.c -fPIC -DPIC -o .libs/smixturehmm.o --- smap_classify.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c smap_classify.c -fPIC -DPIC -o .libs/smap_classify.o --- smixturehmm.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smixturehmm.lo -MD -MP -MF .deps/smixturehmm.Tpo -c smixturehmm.c -o smixturehmm.o >/dev/null 2>&1 --- smap_classify.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smap_classify.lo -MD -MP -MF .deps/smap_classify.Tpo -c smap_classify.c -o smap_classify.o >/dev/null 2>&1 mv -f .deps/smap_classify.Tpo .deps/smap_classify.Plo --- sdmodel.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c -o sdmodel.lo sdmodel.c --- smixturehmm.lo --- mv -f .deps/smixturehmm.Tpo .deps/smixturehmm.Plo --- sdfoba.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c -o sdfoba.lo sdfoba.c --- sdmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c sdmodel.c -fPIC -DPIC -o .libs/sdmodel.o --- sdfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c sdfoba.c -fPIC -DPIC -o .libs/sdfoba.o --- reestimate.lo --- mv -f .deps/reestimate.Tpo .deps/reestimate.Plo --- sdviterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c -o sdviterbi.lo sdviterbi.c --- sreestimate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sreestimate.lo -MD -MP -MF .deps/sreestimate.Tpo -c sreestimate.c -o sreestimate.o >/dev/null 2>&1 --- sdfoba.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdfoba.lo -MD -MP -MF .deps/sdfoba.Tpo -c sdfoba.c -o sdfoba.o >/dev/null 2>&1 --- smodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smodel.lo -MD -MP -MF .deps/smodel.Tpo -c smodel.c -o smodel.o >/dev/null 2>&1 --- sdviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c sdviterbi.c -fPIC -DPIC -o .libs/sdviterbi.o --- sdfoba.lo --- mv -f .deps/sdfoba.Tpo .deps/sdfoba.Plo --- pmodel.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c -o pmodel.lo pmodel.c --- sequence.lo --- mv -f .deps/sequence.Tpo .deps/sequence.Plo --- pviterbi.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c -o pviterbi.lo pviterbi.c --- foba.lo --- mv -f .deps/foba.Tpo .deps/foba.Plo --- pviterbi_propagate.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c -o pviterbi_propagate.lo pviterbi_propagate.c --- pmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c pmodel.c -fPIC -DPIC -o .libs/pmodel.o --- sgenerate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sgenerate.lo -MD -MP -MF .deps/sgenerate.Tpo -c sgenerate.c -o sgenerate.o >/dev/null 2>&1 --- pviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c pviterbi.c -fPIC -DPIC -o .libs/pviterbi.o --- pviterbi_propagate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c pviterbi_propagate.c -fPIC -DPIC -o .libs/pviterbi_propagate.o --- pmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pmodel.lo -MD -MP -MF .deps/pmodel.Tpo -c pmodel.c -o pmodel.o >/dev/null 2>&1 mv -f .deps/pmodel.Tpo .deps/pmodel.Plo --- fbgibbs.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT fbgibbs.lo -MD -MP -MF .deps/fbgibbs.Tpo -c -o fbgibbs.lo fbgibbs.c --- sdmodel.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdmodel.lo -MD -MP -MF .deps/sdmodel.Tpo -c sdmodel.c -o sdmodel.o >/dev/null 2>&1 --- fbgibbs.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT fbgibbs.lo -MD -MP -MF .deps/fbgibbs.Tpo -c fbgibbs.c -fPIC -DPIC -o .libs/fbgibbs.o --- pviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi.lo -MD -MP -MF .deps/pviterbi.Tpo -c pviterbi.c -o pviterbi.o >/dev/null 2>&1 --- sdviterbi.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sdviterbi.lo -MD -MP -MF .deps/sdviterbi.Tpo -c sdviterbi.c -o sdviterbi.o >/dev/null 2>&1 --- discrime.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT discrime.lo -MD -MP -MF .deps/discrime.Tpo -c discrime.c -o discrime.o >/dev/null 2>&1 --- sgenerate.lo --- mv -f .deps/sgenerate.Tpo .deps/sgenerate.Plo --- cfbgibbs.lo --- /bin/sh ../libtool --tag=CC --mode=compile cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cfbgibbs.lo -MD -MP -MF .deps/cfbgibbs.Tpo -c -o cfbgibbs.lo cfbgibbs.c --- fbgibbs.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT fbgibbs.lo -MD -MP -MF .deps/fbgibbs.Tpo -c fbgibbs.c -o fbgibbs.o >/dev/null 2>&1 --- cfbgibbs.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cfbgibbs.lo -MD -MP -MF .deps/cfbgibbs.Tpo -c cfbgibbs.c -fPIC -DPIC -o .libs/cfbgibbs.o --- smodel.lo --- mv -f .deps/smodel.Tpo .deps/smodel.Plo --- sreestimate.lo --- mv -f .deps/sreestimate.Tpo .deps/sreestimate.Plo --- sdviterbi.lo --- mv -f .deps/sdviterbi.Tpo .deps/sdviterbi.Plo --- sdmodel.lo --- mv -f .deps/sdmodel.Tpo .deps/sdmodel.Plo --- pviterbi.lo --- mv -f .deps/pviterbi.Tpo .deps/pviterbi.Plo --- model.lo --- mv -f .deps/model.Tpo .deps/model.Plo --- fbgibbs.lo --- mv -f .deps/fbgibbs.Tpo .deps/fbgibbs.Plo --- cfbgibbs.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cfbgibbs.lo -MD -MP -MF .deps/cfbgibbs.Tpo -c cfbgibbs.c -o cfbgibbs.o >/dev/null 2>&1 --- pviterbi_propagate.lo --- libtool: compile: cc -DHAVE_CONFIG_H -I. -I.. -I.. -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT pviterbi_propagate.lo -MD -MP -MF .deps/pviterbi_propagate.Tpo -c pviterbi_propagate.c -o pviterbi_propagate.o >/dev/null 2>&1 --- cfbgibbs.lo --- mv -f .deps/cfbgibbs.Tpo .deps/cfbgibbs.Plo --- discrime.lo --- mv -f .deps/discrime.Tpo .deps/discrime.Plo --- pviterbi_propagate.lo --- mv -f .deps/pviterbi_propagate.Tpo .deps/pviterbi_propagate.Plo --- libghmm.la --- /bin/sh ../libtool --tag=CC --mode=link cc -DDTD_LOC=\"/usr/local/share/ghmm/ghmm.dtd.1.0\" -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -version-info 1:0:0 -o libghmm.la -rpath /usr/local/lib rng.lo randvar.lo matrixop.lo gauss_tail.lo mes.lo ghmm_internals.lo mprintf.lo vector.lo matrix.lo scanner.lo linkedlist.lo sequence.lo psequence.lo xmlreader.lo xmlwriter.lo model.lo foba.lo viterbi.lo reestimate.lo gradescent.lo kbest.lo discrime.lo modelutil.lo cluster.lo root_finder.lo smodel.lo sfoba.lo sviterbi.lo sreestimate.lo scluster.lo sgenerate.lo smixturehmm.lo smap_classify.lo sdmodel.lo sdfoba.lo sdviterbi.lo pmodel.lo pviterbi.lo pviterbi_propagate.lo fbgibbs.lo cfbgibbs.lo -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 libtool: link: cc -shared -fPIC -DPIC .libs/rng.o .libs/randvar.o .libs/matrixop.o .libs/gauss_tail.o .libs/mes.o .libs/ghmm_internals.o .libs/mprintf.o .libs/vector.o .libs/matrix.o .libs/scanner.o .libs/linkedlist.o .libs/sequence.o .libs/psequence.o .libs/xmlreader.o .libs/xmlwriter.o .libs/model.o .libs/foba.o .libs/viterbi.o .libs/reestimate.o .libs/gradescent.o .libs/kbest.o .libs/discrime.o .libs/modelutil.o .libs/cluster.o .libs/root_finder.o .libs/smodel.o .libs/sfoba.o .libs/sviterbi.o .libs/sreestimate.o .libs/scluster.o .libs/sgenerate.o .libs/smixturehmm.o .libs/smap_classify.o .libs/sdmodel.o .libs/sdfoba.o .libs/sdviterbi.o .libs/pmodel.o .libs/pviterbi.o .libs/pviterbi_propagate.o .libs/fbgibbs.o .libs/cfbgibbs.o -lm -lpthread -L/usr/local/lib -lxml2 -O2 -Wl,-soname -Wl,libghmm.so.1 -o .libs/libghmm.so.1.0.0 libtool: link: (cd ".libs" && rm -f "libghmm.so.1" && ln -s "libghmm.so.1.0.0" "libghmm.so.1") libtool: link: (cd ".libs" && rm -f "libghmm.so" && ln -s "libghmm.so.1.0.0" "libghmm.so") libtool: link: ar cru .libs/libghmm.a rng.o randvar.o matrixop.o gauss_tail.o mes.o ghmm_internals.o mprintf.o vector.o matrix.o scanner.o linkedlist.o sequence.o psequence.o xmlreader.o xmlwriter.o model.o foba.o viterbi.o reestimate.o gradescent.o kbest.o discrime.o modelutil.o cluster.o root_finder.o smodel.o sfoba.o sviterbi.o sreestimate.o scluster.o sgenerate.o smixturehmm.o smap_classify.o sdmodel.o sdfoba.o sdviterbi.o pmodel.o pviterbi.o pviterbi_propagate.o fbgibbs.o cfbgibbs.o /usr/libexec/binutils227/elf/ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libghmm.a libtool: link: ( cd ".libs" && rm -f "libghmm.la" && ln -s "../libghmm.la" "libghmm.la" ) Making all in tools --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in . --- probdist.o --- --- cluster.o --- --- scluster.o --- --- smix_hmm.o --- --- cluster.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT cluster.o -MD -MP -MF .deps/cluster.Tpo -c -o cluster.o cluster.c --- probdist.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT probdist.o -MD -MP -MF .deps/probdist.Tpo -c -o probdist.o probdist.c --- scluster.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT scluster.o -MD -MP -MF .deps/scluster.Tpo -c -o scluster.o scluster.c --- smix_hmm.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT smix_hmm.o -MD -MP -MF .deps/smix_hmm.Tpo -c -o smix_hmm.o smix_hmm.c --- scluster.o --- mv -f .deps/scluster.Tpo .deps/scluster.Po --- scluster --- --- cluster.o --- mv -f .deps/cluster.Tpo .deps/cluster.Po --- smix_hmm.o --- mv -f .deps/smix_hmm.Tpo .deps/smix_hmm.Po --- cluster --- --- smix_hmm --- --- scluster --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o scluster scluster.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- cluster --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o cluster cluster.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- smix_hmm --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o smix_hmm smix_hmm.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- probdist.o --- mv -f .deps/probdist.Tpo .deps/probdist.Po --- probdist --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o probdist probdist.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- smix_hmm --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o smix_hmm smix_hmm.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- probdist --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o probdist probdist.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- cluster --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o cluster cluster.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- scluster --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o scluster scluster.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 Making all in tests --- all-recursive --- Making all in data --- all-recursive --- Making all in . --- randvar_test.o --- --- root_finder_test.o --- --- coin_toss_test.o --- --- two_states_three_symbols.o --- --- libxml-test.o --- --- chmm.o --- --- chmm_test.o --- --- shmm_viterbi_test.o --- --- test_gsl_ran_gaussian_tail.o --- --- sequences_test.o --- --- randvar_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT randvar_test.o -MD -MP -MF .deps/randvar_test.Tpo -c -o randvar_test.o randvar_test.c --- root_finder_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT root_finder_test.o -MD -MP -MF .deps/root_finder_test.Tpo -c -o root_finder_test.o root_finder_test.c --- coin_toss_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT coin_toss_test.o -MD -MP -MF .deps/coin_toss_test.Tpo -c -o coin_toss_test.o coin_toss_test.c --- two_states_three_symbols.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT two_states_three_symbols.o -MD -MP -MF .deps/two_states_three_symbols.Tpo -c -o two_states_three_symbols.o two_states_three_symbols.c --- chmm_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT chmm_test.o -MD -MP -MF .deps/chmm_test.Tpo -c -o chmm_test.o chmm_test.c --- chmm.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT chmm.o -MD -MP -MF .deps/chmm.Tpo -c -o chmm.o chmm.c --- shmm_viterbi_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT shmm_viterbi_test.o -MD -MP -MF .deps/shmm_viterbi_test.Tpo -c -o shmm_viterbi_test.o shmm_viterbi_test.c --- sequences_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequences_test.o -MD -MP -MF .deps/sequences_test.Tpo -c -o sequences_test.o sequences_test.c --- test_gsl_ran_gaussian_tail.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT test_gsl_ran_gaussian_tail.o -MD -MP -MF .deps/test_gsl_ran_gaussian_tail.Tpo -c -o test_gsl_ran_gaussian_tail.o test_gsl_ran_gaussian_tail.c --- libxml-test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT libxml-test.o -MD -MP -MF .deps/libxml-test.Tpo -c -o libxml-test.o libxml-test.c --- root_finder_test.o --- mv -f .deps/root_finder_test.Tpo .deps/root_finder_test.Po --- sequences_old_format.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT sequences_old_format.o -MD -MP -MF .deps/sequences_old_format.Tpo -c -o sequences_old_format.o sequences_old_format.c --- shmm_viterbi_test.o --- mv -f .deps/shmm_viterbi_test.Tpo .deps/shmm_viterbi_test.Po --- label_higher_order_test.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT label_higher_order_test.o -MD -MP -MF .deps/label_higher_order_test.Tpo -c -o label_higher_order_test.o label_higher_order_test.c --- sequences_test.o --- mv -f .deps/sequences_test.Tpo .deps/sequences_test.Po --- read_fa.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT read_fa.o -MD -MP -MF .deps/read_fa.Tpo -c -o read_fa.o read_fa.c --- chmm.o --- mv -f .deps/chmm.Tpo .deps/chmm.Po --- mcmc.o --- cc -DHAVE_CONFIG_H -I. -I.. -I.. -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -MT mcmc.o -MD -MP -MF .deps/mcmc.Tpo -c -o mcmc.o mcmc.c --- two_states_three_symbols.o --- mv -f .deps/two_states_three_symbols.Tpo .deps/two_states_three_symbols.Po --- sequences_old_format.o --- mv -f .deps/sequences_old_format.Tpo .deps/sequences_old_format.Po --- root_finder_test --- --- shmm_viterbi_test --- --- root_finder_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o root_finder_test root_finder_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- test_gsl_ran_gaussian_tail.o --- mv -f .deps/test_gsl_ran_gaussian_tail.Tpo .deps/test_gsl_ran_gaussian_tail.Po --- sequences_test --- --- shmm_viterbi_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o shmm_viterbi_test shmm_viterbi_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- sequences_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_test sequences_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- mcmc.o --- mcmc.c: In function 'main': mcmc.c:144:3: warning: implicit declaration of function 'init_priors' [-Wimplicit-function-declaration] init_priors(mo, &pA, &pB, &pPi); ^~~~~~~~~~~ mcmc.c:146:15: warning: implicit declaration of function 'ghmm_dmodel_cfbgibbs'; did you mean 'ghmm_dmodel_logp'? [-Wimplicit-function-declaration] int * Q = ghmm_dmodel_cfbgibbs(mo, my_output, ^~~~~~~~~~~~~~~~~~~~ ghmm_dmodel_logp mcmc.c:146:15: warning: initialization of 'int *' from 'int' makes pointer from integer without a cast [-Wint-conversion] mcmc.c:148:108: warning: passing argument 4 of 'ghmm_dmodel_viterbi_logp' makes pointer from integer without a cast [-Wint-conversion] printf("viterbi prob mcmc%f \n", ghmm_dmodel_viterbi_logp(mo, my_output->seq[0], my_output->seq_len[0], Q[0])); ~^~~ In file included from mcmc.c:13: ../ghmm/viterbi.h:75:76: note: expected 'int *' but argument is of type 'int' double ghmm_dmodel_viterbi_logp (ghmm_dmodel * mo, int *o, int len, int *state_seq); ~~~~~^~~~~~~~~ --- libxml-test.o --- mv -f .deps/libxml-test.Tpo .deps/libxml-test.Po --- chmm --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm chmm.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- coin_toss_test.o --- mv -f .deps/coin_toss_test.Tpo .deps/coin_toss_test.Po --- two_states_three_symbols --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o two_states_three_symbols two_states_three_symbols.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- chmm_test.o --- mv -f .deps/chmm_test.Tpo .deps/chmm_test.Po --- sequences_old_format --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_old_format sequences_old_format.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- sequences_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_test sequences_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- label_higher_order_test.o --- mv -f .deps/label_higher_order_test.Tpo .deps/label_higher_order_test.Po --- root_finder_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o root_finder_test root_finder_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- test_gsl_ran_gaussian_tail --- --- shmm_viterbi_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o shmm_viterbi_test shmm_viterbi_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- test_gsl_ran_gaussian_tail --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o test_gsl_ran_gaussian_tail test_gsl_ran_gaussian_tail.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- libxml-test --- --- chmm --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm chmm.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- libxml-test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o libxml-test libxml-test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- sequences_old_format --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o sequences_old_format sequences_old_format.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- read_fa.o --- mv -f .deps/read_fa.Tpo .deps/read_fa.Po --- coin_toss_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o coin_toss_test coin_toss_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- mcmc.o --- mv -f .deps/mcmc.Tpo .deps/mcmc.Po --- chmm_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm_test chmm_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- randvar_test.o --- mv -f .deps/randvar_test.Tpo .deps/randvar_test.Po --- label_higher_order_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o label_higher_order_test label_higher_order_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- test_gsl_ran_gaussian_tail --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o test_gsl_ran_gaussian_tail test_gsl_ran_gaussian_tail.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- read_fa --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o read_fa read_fa.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- mcmc --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o mcmc mcmc.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- randvar_test --- /bin/sh ../libtool --tag=CC --mode=link cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o randvar_test randvar_test.o ../ghmm/.libs/libghmm.a -lm -lm -lm -lm -lpthread -L/usr/local/lib -lxml2 --- chmm_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o chmm_test chmm_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- two_states_three_symbols --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o two_states_three_symbols two_states_three_symbols.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- libxml-test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o libxml-test libxml-test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- read_fa --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o read_fa read_fa.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- label_higher_order_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o label_higher_order_test label_higher_order_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- randvar_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o randvar_test randvar_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- mcmc --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o mcmc mcmc.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 --- coin_toss_test --- libtool: link: cc -pipe -O2 -fno-strict-aliasing -I/usr/local/include/libxml2 -o coin_toss_test coin_toss_test.o ../ghmm/.libs/libghmm.a -lm -lpthread -L/usr/local/lib -lxml2 SUCCEEDED 00:00:13 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for ghmm-0.9.r3 ===> Generating temporary packing list if test -z 'strip'; then /usr/bin/make INSTALL_PROGRAM="/bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" install_sh_PROGRAM="/bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" INSTALL_STRIP_FLAG=-s install; else /usr/bin/make INSTALL_PROGRAM="/bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" install_sh_PROGRAM="/bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s" INSTALL_STRIP_FLAG=-s "INSTALL_PROGRAM_ENV=STRIPPROG='strip'" install; fi Making install in ghmm Making install in . /bin/mkdir -p '/construction/science/ghmm/stage/usr/local/lib' /bin/sh ../libtool --mode=install /usr/bin/install -c -s libghmm.la '/construction/science/ghmm/stage/usr/local/lib' libtool: install: /usr/bin/install -c .libs/libghmm.so.1.0.0 /construction/science/ghmm/stage/usr/local/lib/libghmm.so.1.0.0 libtool: install: strip --strip-unneeded /construction/science/ghmm/stage/usr/local/lib/libghmm.so.1.0.0 libtool: install: (cd /construction/science/ghmm/stage/usr/local/lib && { ln -s -f libghmm.so.1.0.0 libghmm.so.1 || { rm -f libghmm.so.1 && ln -s libghmm.so.1.0.0 libghmm.so.1; }; }) libtool: install: (cd /construction/science/ghmm/stage/usr/local/lib && { ln -s -f libghmm.so.1.0.0 libghmm.so || { rm -f libghmm.so && ln -s libghmm.so.1.0.0 libghmm.so; }; }) libtool: install: /usr/bin/install -c .libs/libghmm.lai /construction/science/ghmm/stage/usr/local/lib/libghmm.la libtool: install: /usr/bin/install -c .libs/libghmm.a /construction/science/ghmm/stage/usr/local/lib/libghmm.a libtool: install: strip --strip-debug /construction/science/ghmm/stage/usr/local/lib/libghmm.a libtool: install: chmod 644 /construction/science/ghmm/stage/usr/local/lib/libghmm.a libtool: install: ranlib /construction/science/ghmm/stage/usr/local/lib/libghmm.a libtool: warning: remember to run 'libtool --finish /usr/local/lib' /bin/mkdir -p '/construction/science/ghmm/stage/usr/local/include/ghmm' install -m 0644 ghmm.h ghmmconfig.h sequence.h psequence.h xmlreader.h xmlwriter.h model.h foba.h viterbi.h gradescent.h kbest.h discrime.h cluster.h scluster.h reestimate.h sfoba.h sviterbi.h smodel.h sdmodel.h sdfoba.h sreestimate.h sgenerate.h smixturehmm.h smap_classify.h pmodel.h pviterbi.h pviterbi_propagate.h rng.h scanner.h obsolete.h unsupported.h fbgibbs.h cfbgibbs.h '/construction/science/ghmm/stage/usr/local/include/ghmm' Making install in tools /usr/bin/make install-recursive Making install in . /bin/mkdir -p '/construction/science/ghmm/stage/usr/local/bin' STRIPPROG='strip' /bin/sh ../libtool --mode=install /bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s probdist cluster scluster smix_hmm '/construction/science/ghmm/stage/usr/local/bin' libtool: install: /bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s probdist /construction/science/ghmm/stage/usr/local/bin/probdist libtool: install: /bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s cluster /construction/science/ghmm/stage/usr/local/bin/cluster libtool: install: /bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s scluster /construction/science/ghmm/stage/usr/local/bin/scluster libtool: install: /bin/sh /construction/science/ghmm/ghmm-0.9-rc3/install-sh -c -s smix_hmm /construction/science/ghmm/stage/usr/local/bin/smix_hmm /bin/mkdir -p '/construction/science/ghmm/stage/usr/local/bin' install -m 555 ghmm-config '/construction/science/ghmm/stage/usr/local/bin' Making install in tests Making install in data Making install in . /bin/mkdir -p '/construction/science/ghmm/stage/usr/local/share/ghmm' install -m 0644 doc/ghmm.dtd.1.0 '/construction/science/ghmm/stage/usr/local/share/ghmm' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for ghmm-0.9.r3 file sizes/checksums [43]: 0% file sizes/checksums [43]: 100% packing files [43]: 0% packing files [43]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:00:57