------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/gmake-4.3.txz Installing /packages/All/pcre-8.43_2.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libiconv-1.14_11.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.7.txz ===== Message from python37-3.7.7: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.56.3_7,1.txz No schema files found: doing nothing. Installing /packages/All/atk-2.28.1.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/shared-mime-info-1.10_2.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9_1,1.txz Installing /packages/All/gdk-pixbuf2-2.40.0.txz Installing /packages/All/freetype2-2.10.1.txz ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.6.5.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/fribidi-0.19.7.txz Installing /packages/All/wayland-1.16.0.txz Installing /packages/All/pciids-20200421.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libelf-0.8.13_3.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/mesa-libs-19.0.8.txz ===== Message from mesa-libs-19.0.8: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/pixman-0.40.0.txz Installing /packages/All/cairo-1.16.0,2.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.3_4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/pango-1.42.4_3.txz Installing /packages/All/hicolor-icon-theme-0.17.txz Installing /packages/All/libXinerama-1.1.4_2,1.txz Installing /packages/All/libXi-1.7.10,1.txz Installing /packages/All/libXcursor-1.2.0.txz Installing /packages/All/libXcomposite-0.4.5,1.txz Installing /packages/All/gtk-update-icon-cache-2.24.32.txz Installing /packages/All/pkgconf-1.6.3,1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/libGLU-9.0.1.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/dbus-1.12.16.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.18.1_1.txz Installing /packages/All/gobject-introspection-1.56.1,1.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.7_3.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/nettle-3.5.1_1.txz Installing /packages/All/libtasn1-4.16.0.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/ca_root_nss-3.52.txz ===== Message from ca_root_nss-3.52: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/p11-kit-0.23.20.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_2.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.13.txz Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/cups-2.2.13.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/gtk2-2.24.32.txz Installing /packages/All/pangox-compat-0.0.2_2.txz Installing /packages/All/gtkglext-1.2.0_19.txz ===== Message from gtkglext-1.2.0_19: -- ===> NOTICE: The gtkglext port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port SUCCEEDED 00:00:45 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gabedit-2.5.1_4 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gabedit-2.5.1_4 for building => SHA256 Checksum OK for GabeditSrc251_061218.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by gabedit-2.5.1_4 for building ===> Extracting for gabedit-2.5.1_4 => SHA256 Checksum OK for GabeditSrc251_061218.tar.gz. Extracted Memory Use: 22.68M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for gabedit-2.5.1_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on package: gmake>=4.3 - found ===> gabedit-2.5.1_4 depends on executable: gtk-update-icon-cache - found ===> gabedit-2.5.1_4 depends on package: pkgconf>=1.3.0_1 - found ===> gabedit-2.5.1_4 depends on package: xorgproto>=0 - found ===> gabedit-2.5.1_4 depends on package: xorgproto>=0 - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> gabedit-2.5.1_4 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> gabedit-2.5.1_4 depends on shared library: libgtkglext-x11-1.0.so - found (/usr/local/lib/libgtkglext-x11-1.0.so) ===> gabedit-2.5.1_4 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> gabedit-2.5.1_4 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> gabedit-2.5.1_4 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> gabedit-2.5.1_4 depends on shared library: libatk-1.0.so - found (/usr/local/lib/libatk-1.0.so) ===> gabedit-2.5.1_4 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> gabedit-2.5.1_4 depends on shared library: libgdk_pixbuf-2.0.so - found (/usr/local/lib/libgdk_pixbuf-2.0.so) ===> gabedit-2.5.1_4 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> gabedit-2.5.1_4 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> gabedit-2.5.1_4 depends on shared library: libgtk-x11-2.0.so - found (/usr/local/lib/libgtk-x11-2.0.so) ===> gabedit-2.5.1_4 depends on shared library: libpango-1.0.so - found (/usr/local/lib/libpango-1.0.so) ===> gabedit-2.5.1_4 depends on shared library: libpangox-1.0.so - found (/usr/local/lib/libpangox-1.0.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on package: gmake>=4.3 - found ===> gabedit-2.5.1_4 depends on executable: gtk-update-icon-cache - found ===> gabedit-2.5.1_4 depends on package: pkgconf>=1.3.0_1 - found ===> gabedit-2.5.1_4 depends on package: xorgproto>=0 - found ===> gabedit-2.5.1_4 depends on package: xorgproto>=0 - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> gabedit-2.5.1_4 depends on shared library: libfontconfig.so - found (/usr/local/lib/libfontconfig.so) ===> gabedit-2.5.1_4 depends on shared library: libfreetype.so - found (/usr/local/lib/libfreetype.so) ===> gabedit-2.5.1_4 depends on shared library: libgtkglext-x11-1.0.so - found (/usr/local/lib/libgtkglext-x11-1.0.so) ===> gabedit-2.5.1_4 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> gabedit-2.5.1_4 depends on shared library: libGL.so - found (/usr/local/lib/libGL.so) ===> gabedit-2.5.1_4 depends on shared library: libGLU.so - found (/usr/local/lib/libGLU.so) ===> gabedit-2.5.1_4 depends on shared library: libatk-1.0.so - found (/usr/local/lib/libatk-1.0.so) ===> gabedit-2.5.1_4 depends on shared library: libcairo.so - found (/usr/local/lib/libcairo.so) ===> gabedit-2.5.1_4 depends on shared library: libgdk_pixbuf-2.0.so - found (/usr/local/lib/libgdk_pixbuf-2.0.so) ===> gabedit-2.5.1_4 depends on shared library: libglib-2.0.so - found (/usr/local/lib/libglib-2.0.so) ===> gabedit-2.5.1_4 depends on shared library: libintl.so - found (/usr/local/lib/libintl.so) ===> gabedit-2.5.1_4 depends on shared library: libgtk-x11-2.0.so - found (/usr/local/lib/libgtk-x11-2.0.so) ===> gabedit-2.5.1_4 depends on shared library: libpango-1.0.so - found (/usr/local/lib/libpango-1.0.so) ===> gabedit-2.5.1_4 depends on shared library: libpangox-1.0.so - found (/usr/local/lib/libpangox-1.0.so) ===> Configuring for gabedit-2.5.1_4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for gabedit-2.5.1_4 gmake[1]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218' make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gaussian' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceBasis.c -o GInterfaceBasis.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Common' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gabedit.c -o Gabedit.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Spectrum' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SpectrumWin.c -o SpectrumWin.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceGeom.c -o GInterfaceGeom.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/MolecularMechanics' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Molpro' cflags` Atom.c -o Atom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolproLib.c -o MolproLib.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Geometry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` EnergiesCurves.c -o EnergiesCurves.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Display' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GeomOrbXYZ.c -o GeomOrbXYZ.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Files' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FileChooser.c -o FileChooser.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Molcas' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Molcas.c -o Molcas.o GInterfaceBasis.c: In function 'create_basis_interface': GInterfaceBasis.c:864:14: warning: variable 'vseparator' set but not used [-Wunused-but-set-variable] GtkWidget *vseparator; ^~~~~~~~~~ Gabedit.c: In function 'main': Gabedit.c:50:8: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] gint ierr; ^~~~ GInterfaceBasis.c: In function 'EditBasisT': GInterfaceBasis.c:629:25: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(pathString,"%d",i); ^ GInterfaceBasis.c:629:3: note: 'sprintf' output between 2 and 11 bytes into a destination of size 10 sprintf(pathString,"%d",i); ^~~~~~~~~~~~~~~~~~~~~~~~~~ EnergiesCurves.c: In function 'destroy_widget_null': EnergiesCurves.c:546:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i<*k;i++) ^~~ EnergiesCurves.c:549:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' g_free(GeomConv); ^~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasGateWay.c -o MolcasGateWay.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Help.c -o Help.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Molecule.c -o Molecule.o GeomOrbXYZ.c: In function 'gl_read_xyz_file': GeomOrbXYZ.c:520:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(j>=(gint)n) ^~ GeomOrbXYZ.c:522:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' progress_orb(scal,GABEDIT_PROGORB_READGEOM,FALSE); ^~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FolderChooser.c -o FolderChooser.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Fragments.c -o Fragments.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasSeward.c -o MolcasSeward.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceLink.c -o GInterfaceLink.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IRSpectrum.c -o IRSpectrum.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Install.c -o Install.o MolcasGateWay.c: In function 'getMolcasGeometryListOfAtomsFromInputFile': MolcasGateWay.c:774:7: warning: variable 'gateWayPos' set but not used [-Wunused-but-set-variable] long gateWayPos = 0; ^~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ListeFiles.c -o ListeFiles.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceMethodeBase.c -o GInterfaceMethodeBase.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditFolderChooser.c -o GabeditFolderChooser.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ForceField.c -o ForceField.o ListeFiles.c: In function 'create_remote_frame_popup': ListeFiles.c:986:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ ListeFiles.c: In function 'create_local_frame_popup': ListeFiles.c:1126:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ ListeFiles.c: In function 'create_remote_frame': ListeFiles.c:1305:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ ListeFiles.c: In function 'create_local_frame': ListeFiles.c:1442:14: warning: variable 'Label' set but not used [-Wunused-but-set-variable] GtkWidget *Label; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasScf.c -o MolcasScf.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolecularMechanics.c -o MolecularMechanics.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` RamanSpectrum.c -o RamanSpectrum.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditFileChooser.c -o GabeditFileChooser.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GInterfaceRoute.c -o GInterfaceRoute.o MolecularMechanics.c: In function 'calculateGradientBendAmber': MolecularMechanics.c:1484:31: warning: variable 'cosTheta' set but not used [-Wunused-but-set-variable] gdouble thetaDeg, thetaRad, cosTheta; ^~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceBasis.c -o MInterfaceBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Preferences.c -o Preferences.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GeomConversion.c -o GeomConversion.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasGridIT.c -o MolcasGridIT.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Files' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include BondsOrb.c -o BondsOrb.o MInterfaceBasis.c: In function 'DialogueAdd': MInterfaceBasis.c:1020:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ MInterfaceBasis.c: In function 'AjoutePageBasis': MInterfaceBasis.c:1122:13: warning: variable 'window1' set but not used [-Wunused-but-set-variable] GtkWidget *window1; ^~~~~~~ GeomConversion.c: In function 'zmat_to_xyz': GeomConversion.c:552:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ GeomConversion.c:555:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ GeomConversion.c:594:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ GeomConversion.c:597:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasOptimization.c -o MolcasOptimization.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceComm.c -o MInterfaceComm.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gaussian.c -o Gaussian.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` UVSpectrum.c -o UVSpectrum.o MInterfaceComm.c: In function 'CreateListeComm': MInterfaceComm.c:1119:13: warning: variable 'window1' set but not used [-Wunused-but-set-variable] GtkWidget *window1; ^~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ConjugateGradient.c -o ConjugateGradient.o UVSpectrum.c: In function 'read_gamess_file': UVSpectrum.c:366:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ UVSpectrum.c: In function 'read_firefly_file': UVSpectrum.c:460:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ UVSpectrum.c: In function 'read_gaussian_file': UVSpectrum.c:540:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasVariables.c -o MolcasVariables.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GeomDraw.c -o GeomDraw.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceGene.c -o MInterfaceGene.o ConjugateGradient.c: In function 'inverseParabolicInterpolation': ConjugateGradient.c:676:26: warning: variable 'midAB' set but not used [-Wunused-but-set-variable] gdouble pointA, pointB, midAB; ^~~~~ MolcasVariables.c: In function 'putVariablesInTextEditor': MolcasVariables.c:355:48: warning: '%s' directive writing up to 1023 bytes into a region of size 995 [-Wformat-overflow=] sprintf(buffer,"* MOLCASWORKDIR=%s\n",workDir); ^~ ~~~~~~~ MolcasVariables.c:355:3: note: 'sprintf' output between 31 and 1054 bytes into a destination of size 1024 sprintf(buffer,"* MOLCASWORKDIR=%s\n",workDir); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasLib.c -o MolcasLib.o MInterfaceGene.c: In function 'create_epilogue': MInterfaceGene.c:164:14: warning: variable 'vboxo' set but not used [-Wunused-but-set-variable] GtkWidget *vboxo; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasBasisLibrary.c -o MolcasBasisLibrary.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SteepestDescent.c -o SteepestDescent.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ECDSpectrum.c -o ECDSpectrum.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MInterfaceGeom.c -o MInterfaceGeom.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gaussian' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolcasBasis.c -o MolcasBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QuasiNewton.c -o QuasiNewton.o MolcasBasisLibrary.c: In function 'newAtom': MolcasBasisLibrary.c:641:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MolcasBasisLibrary.c: In function 'selectAtom': MolcasBasisLibrary.c:714:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ MolcasBasisLibrary.c: In function 'newAtomDlg': MolcasBasisLibrary.c:767:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MolcasBasisLibrary.c:766:7: warning: variable 'atomNumber' set but not used [-Wunused-but-set-variable] gint atomNumber; ^~~~~~~~~~ MolcasBasisLibrary.c: In function 'newBasisDlg': MolcasBasisLibrary.c:919:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Printer.c -o Printer.o ECDSpectrum.c: In function 'read_firefly_file': ECDSpectrum.c:306:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Molpro.c -o Molpro.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include TriangleDraw.c -o TriangleDraw.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GeomXYZ.c -o GeomXYZ.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsOrb.c -o UtilsOrb.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolecularMechanicsDlg.c -o MolecularMechanicsDlg.o Molpro.c: In function 'GetInfoZmatrix': Molpro.c:489:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(Geom[i].Nentry>NUMBER_ENTRY_ANGLE) ^~ Molpro.c:492:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' line=g_strdup_printf("%s;\n",line); ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NMRSpectrum.c -o NMRSpectrum.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Run.c -o Run.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MolproBasisLibrary.c -o MolproBasisLibrary.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Molcas' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Basis.c -o Basis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` CreateMolecularMechanicsFile.c -o CreateMolecularMechanicsFile.o NMRSpectrum.c: In function 'computeNMRSpectrumWeaklyCoupled': NMRSpectrum.c:1090:7: warning: variable 'sizeMax' set but not used [-Wunused-but-set-variable] gint sizeMax; ^~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Grid.c -o Grid.o MolproBasisLibrary.c: In function 'newAtom': MolproBasisLibrary.c:653:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MolproBasisLibrary.c: In function 'selectAtom': MolproBasisLibrary.c:730:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ MolproBasisLibrary.c: In function 'newAtomDlg': MolproBasisLibrary.c:781:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MolproBasisLibrary.c:780:7: warning: variable 'atomNumber' set but not used [-Wunused-but-set-variable] gint atomNumber; ^~~~~~~~~~ MolproBasisLibrary.c: In function 'newBasisDlg': MolproBasisLibrary.c:914:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ Basis.c: In function 'DefineSphericalBasis': Basis.c:911:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;i2) ^~ GeomZmatrix.c:2797:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(k>0) show_geom_in_list(i); ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IGVPT2Spectrum.c -o IGVPT2Spectrum.o GeomZmatrix.c: In function 'SelectAtom': GeomZmatrix.c:3023:21: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SplashScreen.c -o SplashScreen.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` LoadMMParameters.c -o LoadMMParameters.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCMole.c -o MPQCMole.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCGuessWaveFunction.c -o MPQCGuessWaveFunction.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCMpqc.c -o MPQCMpqc.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` TextEdit.c -o TextEdit.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SetMMParameters.c -o SetMMParameters.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Spectrum' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` CreateDefaultPDBTpl.c -o CreateDefaultPDBTpl.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/DeMon' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMon.c -o DeMon.o MPQCMole.c: In function 'putMPQCMoleInTextEditor': MPQCMole.c:704:24: warning: '%0.3f' directive writing between 3 and 314 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer,"%s %0.3f ", dump, sumFunctionals[i]); ^~~~~ MPQCMole.c:704:20: note: assuming directive output of 5 bytes sprintf(buffer,"%s %0.3f ", dump, sumFunctionals[i]); ^~~~~~~~~~~ MPQCMole.c:704:5: note: 'sprintf' output between 6 and 1340 bytes into a destination of size 1024 sprintf(buffer,"%s %0.3f ", dump, sumFunctionals[i]); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MPQCMole.c:708:21: warning: ' ] ' directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(buffer,"%s ] \n", dump); ^~~~~ MPQCMole.c:708:3: note: 'sprintf' output between 5 and 1028 bytes into a destination of size 1024 sprintf(buffer,"%s ] \n", dump); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MPQCMole.c:722:23: warning: ' <' directive writing 3 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(buffer,"%s\t\t<%s>:()\n", dump, functionals[i].name); ^~~~~ MPQCMole.c:722:5: note: 'sprintf' output 9 or more bytes (assuming 1032) into a destination of size 1024 sprintf(buffer,"%s\t\t<%s>:()\n", dump, functionals[i].name); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ MPQCMole.c:726:21: warning: ' ] ' directive writing 4 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] sprintf(buffer,"%s\t\t]\n", dump); ^~~~~~~ MPQCMole.c:726:3: note: 'sprintf' output between 5 and 1028 bytes into a destination of size 1024 sprintf(buffer,"%s\t\t]\n", dump); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ TextEdit.c: In function 'cree_text_notebook': TextEdit.c:347:14: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] GtkWidget *hbox; ^~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gamess' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gamess.c -o Gamess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Windows.c -o Windows.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ViewOrb.c -o ViewOrb.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/NWChem' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChem.c -o NWChem.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCBasis.c -o MPQCBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GLArea.c -o GLArea.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessMolecule.c -o GamessMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Status.c -o Status.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemMolecule.c -o NWChemMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonMolecule.c -o DeMonMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCLib.c -o MPQCLib.o SetMMParameters.c: In function 'SelectAtom': SetMMParameters.c:324:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ SetMMParameters.c: In function 'newTorsion': SetMMParameters.c:2677:7: warning: variable 'jj' set but not used [-Wunused-but-set-variable] gint jj; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Exit.c -o Exit.o GamessMolecule.c: In function 'putGamessMoleculeInTextEditor': GamessMolecule.c:615:25: warning: ' ' directive writing 2 bytes into a region of size between 1 and 1024 [-Wformat-overflow=] else sprintf(buffer,"%s\n\n",g); ^~~~ GamessMolecule.c:615:7: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 else sprintf(buffer,"%s\n\n",g); ^~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessControl.c -o GamessControl.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonKeywords.c -o DeMonKeywords.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCBasisLibrary.c -o MPQCBasisLibrary.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsGamess.c -o OrbitalsGamess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemKeywords.c -o NWChemKeywords.o DeMonKeywords.c:870:13: warning: 'putDeMonMethodInfoInTextEditor' defined but not used [-Wunused-function] static void putDeMonMethodInfoInTextEditor() ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MenuToolBar.c -o MenuToolBar.o MPQCBasisLibrary.c: In function 'newAtom': MPQCBasisLibrary.c:607:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MPQCBasisLibrary.c: In function 'selectAtom': MPQCBasisLibrary.c:684:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ MPQCBasisLibrary.c: In function 'newAtomDlg': MPQCBasisLibrary.c:735:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ MPQCBasisLibrary.c:734:7: warning: variable 'atomNumber' set but not used [-Wunused-but-set-variable] gint atomNumber; ^~~~~~~~~~ MPQCBasisLibrary.c: In function 'newBasisDlg': MPQCBasisLibrary.c:865:7: warning: variable 'basisNumber' set but not used [-Wunused-but-set-variable] gint basisNumber; ^~~~~~~~~~~ NWChemKeywords.c: In function 'putNWChemHLKeywordsInfoInTextEditor': NWChemKeywords.c:796:22: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s\n",selectedMethod); ^~ NWChemKeywords.c:796:3: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s\n",selectedMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c: In function 'putNWChemMethodInfoInTextEditor': NWChemKeywords.c:751:25: warning: '%s' directive writing up to 1023 bytes into a region of size 1018 [-Wformat-overflow=] sprintf(buffer,"\ntask %s ",sMethod); ^~ ~~~~~~~ NWChemKeywords.c:751:2: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 sprintf(buffer,"\ntask %s ",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:783:23: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s ",selectedJob); ^ NWChemKeywords.c:783:4: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedJob); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:775:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1018 [-Wformat-overflow=] sprintf(buffer,"\ntask %s ",sMethod); ^~ ~~~~~~~ NWChemKeywords.c:775:4: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 sprintf(buffer,"\ntask %s ",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:763:27: warning: '%s' directive writing up to 1023 bytes into a region of size 1018 [-Wformat-overflow=] sprintf(buffer,"\ntask %s ",sMethod); ^~ ~~~~~~~ NWChemKeywords.c:763:4: note: 'sprintf' output between 8 and 1031 bytes into a destination of size 1024 sprintf(buffer,"\ntask %s ",sMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c: In function 'putNWChemSCFKeywordsInfoInTextEditor': NWChemKeywords.c:705:28: warning: '%s' directive writing up to 1023 bytes into a region of size 1016 [-Wformat-overflow=] sprintf(buffer," thresh %s\n",selectedScfConvergence); ^~ ~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:705:4: note: 'sprintf' output between 10 and 1033 bytes into a destination of size 1024 sprintf(buffer," thresh %s\n",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:686:40: warning: '%s' directive writing up to 1023 bytes into a region of size 1004 [-Wformat-overflow=] sprintf(buffer," convergence energy %s\n",selectedScfConvergence); ^~ ~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:686:4: note: 'sprintf' output between 22 and 1045 bytes into a destination of size 1024 sprintf(buffer," convergence energy %s\n",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NWChemKeywords.c:689:22: warning: ' ' directive writing 1 byte into a region of size between 0 and 1023 [-Wformat-overflow=] sprintf(buffer," %s\n",selectedMethod); ^~ NWChemKeywords.c:689:3: note: 'sprintf' output between 3 and 1026 bytes into a destination of size 1024 sprintf(buffer," %s\n",selectedMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessBasis.c -o GamessBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemGuess.c -o NWChemGuess.o DeMonKeywords.c: In function 'putDeMonSCFKeywordsInfoInTextEditor': DeMonKeywords.c:832:22: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buffer,"%s ",selectedScfConvergence); ^ DeMonKeywords.c:832:3: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024 sprintf(buffer,"%s ",selectedScfConvergence); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DeMonKeywords.c:838:22: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(buffer,"%s ",selectedtight); ^ DeMonKeywords.c:838:3: note: 'sprintf' output between 2 and 1025 bytes into a destination of size 1024 sprintf(buffer,"%s ",selectedtight); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCFunctionals.c -o MPQCFunctionals.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCOptimization.c -o MPQCOptimization.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` StockIcons.c -o StockIcons.o NWChemGuess.c: In function 'putNWChemGuessMethodInfoInTextEditor': NWChemGuess.c:70:21: warning: '%s' directive writing up to 1023 bytes into a region of size 1022 [-Wformat-overflow=] sprintf(buffer," %s ",selectedGuessMethod); ^~ ~~~~~~~~~~~~~~~~~~~ NWChemGuess.c:70:3: note: 'sprintf' output between 4 and 1027 bytes into a destination of size 1024 sprintf(buffer," %s ",selectedGuessMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` LoadPDBTemplate.c -o LoadPDBTemplate.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` NWChemBasis.c -o NWChemBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessGuess.c -o GamessGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonGuess.c -o DeMonGuess.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsMolpro.c -o OrbitalsMolpro.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MPQCProperties.c -o MPQCProperties.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DeMonBasis.c -o DeMonBasis.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsOrca.c -o OrbitalsOrca.o OrbitalsMolpro.c: In function 'get_orbitals_from_strorbs': OrbitalsMolpro.c:797:7: warning: variable 'i' set but not used [-Wunused-but-set-variable] gint i; ^ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PDBTemplate.c -o PDBTemplate.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Common' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsQChem.c -o OrbitalsQChem.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/MPQC' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsNWChem.c -o OrbitalsNWChem.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsMopac.c -o OrbitalsMopac.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GamessSCF.c -o GamessSCF.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/NWChem' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include OrbitalsNBO.c -o OrbitalsNBO.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/DeMon' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Orbitals.c -o Orbitals.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Gamess' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include StatusOrb.c -o StatusOrb.o OrbitalsQChem.c: In function 'DefineQChemSphericalBasis': OrbitalsQChem.c:368:2: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;iactive) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:770:43: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:746:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:746:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:745:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:745:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:733:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:733:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:732:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:732:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:713:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:713:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:712:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:712:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:721:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:721:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:720:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:720:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsCrystal.c -o FragmentsCrystal.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildPolySaccharide.c -o BuildPolySaccharide.o BuildPolyPeptide.c: In function 'undo': BuildPolyPeptide.c:621:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:621:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:620:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:620:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c: In function 'build_c_capping': BuildPolyPeptide.c:691:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:691:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:690:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:690:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:677:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:677:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:676:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:676:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:665:33: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] else sprintf(fullFragName,"D%s",fragName); ^ BuildPolyPeptide.c:665:8: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 else sprintf(fullFragName,"D%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ BuildPolyPeptide.c:664:69: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^ BuildPolyPeptide.c:664:44: note: 'sprintf' output between 2 and 31 bytes into a destination of size 30 if (GTK_TOGGLE_BUTTON (ButtonL)->active) sprintf(fullFragName,"L%s",fragName); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemMolecule.c -o QChemMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include VibrationDraw.c -o VibrationDraw.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Orca' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemRem.c -o QChemRem.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Mopac' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Mopac.c -o Mopac.o Vibration.c: In function 'print_cchemi_qff_geometries': Vibration.c:1786:11: warning: variable 'link' set but not used [-Wunused-but-set-variable] gboolean link = FALSE; ^~~~ Vibration.c: In function 'read_gaussian_file_frequencies': Vibration.c:4528:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemGuess.c -o QChemGuess.o BuildPolySaccharide.c: In function 'add_buttons': BuildPolySaccharide.c:839:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemBasis.c -o QChemBasis.o QChemRem.c: In function 'putQChemExchangeInfoInTextEditor': QChemRem.c:255:31: warning: '%s' directive writing up to 1023 bytes into a region of size 1012 [-Wformat-overflow=] sprintf(buffer," exchange %s\n",selectedExchangeMethod); ^~ ~~~~~~~~~~~~~~~~~~~~~~ QChemRem.c:255:3: note: 'sprintf' output between 14 and 1037 bytes into a destination of size 1024 sprintf(buffer," exchange %s\n",selectedExchangeMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ QChemRem.c: In function 'putQChemCorrelationInfoInTextEditor': QChemRem.c:266:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] sprintf(buffer," correlation %s\n",selectedCorrelationMethod); ^~ ~~~~~~~~~~~~~~~~~~~~~~~~~ QChemRem.c:266:3: note: 'sprintf' output between 17 and 1040 bytes into a destination of size 1024 sprintf(buffer," correlation %s\n",selectedCorrelationMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Vibration.c: In function 'print_thermo': Vibration.c:7684:2: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(str); ^~ Vibration.c:7685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' { ^ Vibration.c: In function 'add_inputThermo': Vibration.c:7703:7: warning: variable 'j' set but not used [-Wunused-but-set-variable] gint j; ^ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MopacMolecule.c -o MopacMolecule.o At top level: Vibration.c:99:13: warning: 'normalize_modes' defined but not used [-Wunused-function] static void normalize_modes() ^~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildPolyNucleicAcid.c -o BuildPolyNucleicAcid.o QChemGuess.c: In function 'putQChemGuessMethodInfoInTextEditor': QChemGuess.c:87:34: warning: '%s' directive writing up to 1023 bytes into a region of size 1009 [-Wformat-overflow=] sprintf(buffer," scf_guess %s\n",selectedGuessMethod); ^~ ~~~~~~~~~~~~~~~~~~~ QChemGuess.c:87:3: note: 'sprintf' output between 17 and 1040 bytes into a destination of size 1024 sprintf(buffer," scf_guess %s\n",selectedGuessMethod); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include VibrationLocal.c -o VibrationLocal.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ColorMap.c -o ColorMap.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` QChemLib.c -o QChemLib.o BuildPolyNucleicAcid.c: In function 'setTorsionAngles': BuildPolyNucleicAcid.c:378:7: warning: variable 'deltaArray1' set but not used [-Wunused-but-set-variable] gint deltaArray1[20]; ^~~~~~~~~~~ BuildPolyNucleicAcid.c:377:7: warning: variable 'alphaArray' set but not used [-Wunused-but-set-variable] gint alphaArray[20]; ^~~~~~~~~~ BuildPolyNucleicAcid.c:368:7: warning: variable 'HO2' set but not used [-Wunused-but-set-variable] gint HO2 = -1, N1 = -1, O3P = -1; ^~~ BuildPolyNucleicAcid.c:367:68: warning: variable 'O2' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~ BuildPolyNucleicAcid.c:367:57: warning: variable 'H2P2' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~~~ BuildPolyNucleicAcid.c:367:46: warning: variable 'H2P1' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~~~ BuildPolyNucleicAcid.c:367:26: warning: variable 'H3P' set but not used [-Wunused-but-set-variable] gint C4 = -1, C3P = -1, H3P = -1, C2P = -1, H2P1 = -1, H2P2 = -1, O2 = -1; ^~~ BuildPolyNucleicAcid.c:366:17: warning: variable 'H4P' set but not used [-Wunused-but-set-variable] gint C4P = -1, H4P = -1, O4P = -1, C1P = -1, H1P = -1, N9 = -1, C2 = -1; ^~~ BuildPolyNucleicAcid.c:365:66: warning: variable 'H5P2' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~~ BuildPolyNucleicAcid.c:365:55: warning: variable 'H5P1' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~~ BuildPolyNucleicAcid.c:365:25: warning: variable 'O2P' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~ BuildPolyNucleicAcid.c:365:15: warning: variable 'O1P' set but not used [-Wunused-but-set-variable] gint P = -1, O1P = -1, O2P = -1, O5P = -1, C5P = -1, H5P1 = -1, H5P2 = -1; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridMolcas.c -o GridMolcas.o ColorMap.c: In function 'new_colorMap_min_max_unicolor': ColorMap.c:221:10: warning: 'color[0]' is used uninitialized in this function [-Wuninitialized] gdouble max = color[0]; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridQChem.c -o GridQChem.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MopacRem.c -o MopacRem.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationRotation.c -o AnimationRotation.o GridMolcas.c: In function 'read_molcasgrid_density_file': GridMolcas.c:933:7: warning: variable 'nMO' set but not used [-Wunused-but-set-variable] gint nMO = 0; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildNanoTube.c -o BuildNanoTube.o AnimationRotation.c: In function 'animationRotationDlg': AnimationRotation.c:505:13: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] GtkWidget *hbox; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` BuildCrystal.c -o BuildCrystal.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/QChem' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationIsoSurface.c -o AnimationIsoSurface.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PersonalFragments.c -o PersonalFragments.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Mopac' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationContours.c -o AnimationContours.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationPlanesMapped.c -o AnimationPlanesMapped.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SavePersonalFragments.c -o SavePersonalFragments.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/NetWork' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Ftp.c -o Ftp.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationGeomConv.c -o AnimationGeomConv.o PersonalFragments.c: In function 'addFragment': PersonalFragments.c:424:9: warning: variable 'name' set but not used [-Wunused-but-set-variable] gchar* name; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` LoadPersonalFragments.c -o LoadPersonalFragments.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationMD.c -o AnimationMD.o AnimationPlanesMapped.c: In function 'animationPlanesMappedDlg': AnimationPlanesMapped.c:618:13: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] GtkWidget *hbox; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PovrayGL.c -o PovrayGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ContoursPov.c -o ContoursPov.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Process.c -o Process.o AnimationGeomConv.c: In function 'print_gaussian_geometries_link': AnimationGeomConv.c:771:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(GTK_IS_WIDGET(buttonChkgauss)&& GTK_TOGGLE_BUTTON (buttonChkgauss)->active) ^~ AnimationGeomConv.c:774:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' fprintf(file,"# %s\n",supstr); ^~~~~~~ AnimationContours.c: In function 'animationContoursDlg': AnimationContours.c:865:13: warning: variable 'hbox' set but not used [-Wunused-but-set-variable] GtkWidget *hbox; ^~~~ AnimationMD.c: In function 'read_MD_gaussian_file_step': AnimationMD.c:2194:11: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK = FALSE; ^~ AnimationMD.c: In function 'read_MD_gamess_trj_file_step': AnimationMD.c:2499:11: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK = FALSE; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PlanesMappedDraw.c -o PlanesMappedDraw.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Rsh.c -o Rsh.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsSelector.c -o FragmentsSelector.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PlanesMapped.c -o PlanesMapped.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` OpenBabel.c -o OpenBabel.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MenuToolBarGeom.c -o MenuToolBarGeom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PreviewGeom.c -o PreviewGeom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Ssh.c -o Ssh.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PlanesMappedPov.c -o PlanesMappedPov.o OpenBabel.c: In function 'disconnect_type': OpenBabel.c:452:8: warning: variable 'nh' set but not used [-Wunused-but-set-variable] guint nh = 0; ^~ OpenBabel.c: In function 'create_babel_dialogue': OpenBabel.c:571:13: warning: variable 'vboxwin' set but not used [-Wunused-but-set-variable] GtkWidget *vboxwin; ^~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include SurfacesPov.c -o SurfacesPov.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Scp.c -o Scp.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FragmentsTree.c -o FragmentsTree.o PreviewGeom.c: In function 'draw_line': PreviewGeom.c:582:19: warning: variable 'colorgray' set but not used [-Wunused-but-set-variable] GdkColor colorgray; ^~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include RingsPov.c -o RingsPov.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ExportGeom.c -o ExportGeom.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Utils' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditTextEdit.c -o GabeditTextEdit.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` FilesTransfer.c -o FilesTransfer.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Symmetry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MoleculeSymmetry.c -o MoleculeSymmetry.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` TreeMolecule.c -o TreeMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MoleculeSymmetryInterface.c -o MoleculeSymmetryInterface.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include MenuToolBarGL.c -o MenuToolBarGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` RemoteCommand.c -o RemoteCommand.o GabeditTextEdit.c: In function 'gabedit_text_search': GabeditTextEdit.c:198:15: warning: variable 'posEnd' set but not used [-Wunused-but-set-variable] GtkTextIter posEnd; ^~~~~~ TreeMolecule.c: In function 'inGroupTreeMolecule': TreeMolecule.c:260:7: warning: variable 'end' set but not used [-Wunused-but-set-variable] gint end = FALSE; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PolyHedralOperators.c -o PolyHedralOperators.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AtomsProp.c -o AtomsProp.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` ReducePolyHedralMolecule.c -o ReducePolyHedralMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include LabelsGL.c -o LabelsGL.o PolyHedralOperators.c: In function 'rotateAroundArbitraryAxes': PolyHedralOperators.c:193:10: warning: variable 'eps' set but not used [-Wunused-but-set-variable] gdouble eps = 1e-3; ^~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DrawGeomGL.c -o DrawGeomGL.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Jacobi.c -o Jacobi.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Batch.c -o Batch.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include RingsOrb.c -o RingsOrb.o MoleculeSymmetry.c: In function 'getAbelianGroupSymbol': MoleculeSymmetry.c:256:7: warning: variable 'ix' set but not used [-Wunused-but-set-variable] gint ix = 0; ^~ DrawGeomGL.c: In function 'show_hydrogen_atoms': DrawGeomGL.c:1350:7: warning: variable 'ni' set but not used [-Wunused-but-set-variable] gint ni; ^~ AtomsProp.c: In function 'open_color_dlg_atoms': AtomsProp.c:848:10: warning: variable 'v' set but not used [-Wunused-but-set-variable] gdouble v[3]; ^ AtomsProp.c: In function 'editedIsotope': AtomsProp.c:1081:7: warning: variable 'Nc' set but not used [-Wunused-but-set-variable] gint Nc = -1; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ExportGL.c -o ExportGL.o DrawGeomGL.c: In function 'setSymbolOfselectedAtomsDlg': DrawGeomGL.c:3963:19: warning: variable 'style' set but not used [-Wunused-but-set-variable] GtkStyle *style; ^~~~~ LabelsGL.c: In function 'showLabelSymbolsNumbersCharges': LabelsGL.c:125:21: warning: '%s' directive writing up to 1023 bytes into a region of size between 1015 and 1024 [-Wformat-overflow=] sprintf(buffer,"%s%s%s",bSymbol,bNumber,bCharge); ^~ ~~~~~~~ LabelsGL.c:125:3: note: 'sprintf' output between 1 and 1042 bytes into a destination of size 1024 sprintf(buffer,"%s%s%s",bSymbol,bNumber,bCharge); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DrawGeomGL.c: In function 'adjust_hydrogens_connected_to_atoms': DrawGeomGL.c:4939:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(geometry0) g_free(geometry0); geometry0 = NULL; ^~ DrawGeomGL.c:4939:38: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(geometry0) g_free(geometry0); geometry0 = NULL; ^~~~~~~~~ DrawGeomGL.c: In function 'add_a_fragment': DrawGeomGL.c:7593:9: warning: variable 'OC1' set but not used [-Wunused-but-set-variable] gint OC1 = -1; ^~~ DrawGeomGL.c: In function 'create_text_win': DrawGeomGL.c:7865:13: warning: variable 'vboxwin' set but not used [-Wunused-but-set-variable] GtkWidget *vboxwin; ^~~~~~~ DrawGeomGL.c: In function 'define_geometry_from_zmat': DrawGeomGL.c:8307:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ DrawGeomGL.c:8310:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ DrawGeomGL.c:8339:3: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ DrawGeomGL.c:8342:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' angle *= DEG_TO_RAD; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include QL.c -o QL.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/NetWork' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include CaptureOrbitals.c -o CaptureOrbitals.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Transformation.c -o Transformation.o DrawGeomGL.c: In function 'delete_one_atom': DrawGeomGL.c:9068:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if(geometry0) g_free(geometry0); geometry0 = NULL; ^~ DrawGeomGL.c:9068:36: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if(geometry0) g_free(geometry0); geometry0 = NULL; ^~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Utils.c -o Utils.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` AxesGeomGL.c -o AxesGeomGL.o DrawGeomGL.c: In function 'gl_build_geometry': DrawGeomGL.c:10506:7: warning: variable 'ni' set but not used [-Wunused-but-set-variable] gint ni, nj; ^~ DrawGeomGL.c:10505:14: warning: variable 'rayon' set but not used [-Wunused-but-set-variable] gdouble rayon; ^~~~~ DrawGeomGL.c:10504:11: warning: variable 'colorFrag' set but not used [-Wunused-but-set-variable] GdkColor colorFrag; ^~~~~~~~~ DrawGeomGL.c:10503:11: warning: variable 'colorYellow' set but not used [-Wunused-but-set-variable] GdkColor colorYellow; ^~~~~~~~~~~ DrawGeomGL.c:10502:11: warning: variable 'colorBlue' set but not used [-Wunused-but-set-variable] GdkColor colorBlue; ^~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsInterface.c -o UtilsInterface.o DrawGeomGL.c: In function 'gl_build_selection': DrawGeomGL.c:10578:7: warning: variable 'ni' set but not used [-Wunused-but-set-variable] gint ni, nj; ^~ DrawGeomGL.c: In function 'NewGeomDrawingArea': DrawGeomGL.c:11352:6: warning: variable 'k' set but not used [-Wunused-but-set-variable] int k = 0; ^ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PrincipalAxis.c -o PrincipalAxis.o RingsOrb.c: In function 'messagesNumberOfRings.isra.0': RingsOrb.c:702:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 1004 and 1014 [-Wformat-overflow=] sprintf(buffer,"I found %d %s\n",nR[i], buffer1); ^~ ~~~~~~~ RingsOrb.c:702:3: note: 'sprintf' output between 12 and 1045 bytes into a destination of size 1024 sprintf(buffer,"I found %d %s\n",nR[i], buffer1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include IntegralOrbitals.c -o IntegralOrbitals.o Utils.c: In function 'run_local_command': Utils.c:658:7: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] gint ierr = 0; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridCP.c -o GridCP.o Utils.c: In function 'variable_name_valid': Utils.c:2688:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for(i=0;in); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/FireFly' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SAtom.c -o SAtom.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` DrawGeomCairo.c -o DrawGeomCairo.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GridMG.c -o GridMG.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include AnimationGrids.c -o AnimationGrids.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/VibrationalCorrections' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` GabeditGaussianInput.c -o GabeditGaussianInput.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/IsotopeDistribution' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculator.c -o IsotopeDistributionCalculator.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include PoissonMG.c -o PoissonMG.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SMolecule.c -o SMolecule.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` MoleculeSE.c -o MoleculeSE.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` IsotopeDistributionCalculatorDlg.c -o IsotopeDistributionCalculatorDlg.o IsotopeDistributionCalculator.c: In function 'compute_peaks': IsotopeDistributionCalculator.c:252:7: warning: variable 'nRemoved' set but not used [-Wunused-but-set-variable] gint nRemoved; ^~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditXYPlot.c -o GabeditXYPlot.o PoissonMG.c: In function 'smootherPoissonMG': PoissonMG.c:613:10: warning: variable 'rms' set but not used [-Wunused-but-set-variable] gdouble rms; ^~~ PoissonMG.c: In function 'solveCGPoissonMG': PoissonMG.c:687:10: warning: variable 'delta0' set but not used [-Wunused-but-set-variable] gdouble delta0; ^~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditContoursPlot.c -o GabeditContoursPlot.o IsotopeDistributionCalculatorDlg.c: In function 'editedPeak': IsotopeDistributionCalculatorDlg.c:274:9: warning: variable 'peaks' set but not used [-Wunused-but-set-variable] GList* peaks; ^~~~~ IsotopeDistributionCalculatorDlg.c:273:7: warning: variable 'Nc' set but not used [-Wunused-but-set-variable] gint Nc = -1; ^~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Elements.c -o Elements.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include NCI.c -o NCI.o GabeditXYPlot.c: In function 'set_object_line_dialog': GabeditXYPlot.c:1303:15: warning: variable 'line_style' set but not used [-Wunused-but-set-variable] GdkLineStyle line_style = GDK_LINE_SOLID; ^~~~~~~~~~ GabeditXYPlot.c: In function 'read_data_1column': GabeditXYPlot.c:1982:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ GabeditXYPlot.c: In function 'read_data_2columns': GabeditXYPlot.c:2074:12: warning: variable 'OK' set but not used [-Wunused-but-set-variable] gboolean OK; ^~ GabeditContoursPlot.c: In function 'create_contours_frame': GabeditContoursPlot.c:1651:13: warning: variable 'LabelMax' set but not used [-Wunused-but-set-variable] GtkWidget *LabelMax = NULL; ^~~~~~~~ GabeditContoursPlot.c:1650:13: warning: variable 'LabelMin' set but not used [-Wunused-but-set-variable] GtkWidget *LabelMin = NULL; ^~~~~~~~ GabeditContoursPlot.c: In function 'create_contours': GabeditContoursPlot.c:1741:13: warning: variable 'frame' set but not used [-Wunused-but-set-variable] GtkWidget *frame; ^~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SOperation.c -o SOperation.o GabeditContoursPlot.c: In function 'set_object_line_dialog': GabeditContoursPlot.c:2455:15: warning: variable 'line_style' set but not used [-Wunused-but-set-variable] GdkLineStyle line_style = GDK_LINE_SOLID; ^~~~~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/VibrationalCorrections' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsCairo.c -o UtilsCairo.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SelectionDlg.c -o SelectionDlg.o GabeditContoursPlot.c: In function 'applyColorMapOptions': GabeditContoursPlot.c:5960:13: warning: variable 'buttonUniColor' set but not used [-Wunused-but-set-variable] GtkWidget* buttonUniColor; ^~~~~~~~~~~~~~ make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/IsotopeDistribution' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Zlm.c -o Zlm.o GabeditXYPlot.c: In function 'draw_points': GabeditXYPlot.c:7544:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpiricalModel.c -o SemiEmpiricalModel.o GabeditXYPlot.c: In function 'draw_hmajor_ticks_and_xlegends': GabeditXYPlot.c:7825:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditXYPlot.c: In function 'draw_vmajor_ticks_and_ylegends': GabeditXYPlot.c:7953:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditXYPlot.c: In function 'gabedit_xyplot_motion_notify': GabeditXYPlot.c:9145:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (y > (xyplot->plotting_rect.y + xyplot->plotting_rect.height)) ^~ GabeditXYPlot.c:9148:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' xyplot->distance_rect.x=xyplot->distance_point.x; ^~~~~~ GabeditContoursPlot.c: In function 'draw_points': GabeditContoursPlot.c:7537:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditContoursPlot.c: In function 'draw_colormap': GabeditContoursPlot.c:7816:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditContoursPlot.c: In function 'draw_hmajor_ticks_and_xlegends': GabeditContoursPlot.c:7992:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ GabeditContoursPlot.c: In function 'draw_vmajor_ticks_and_ylegends': GabeditContoursPlot.c:8122:15: warning: variable 'rect' set but not used [-Wunused-but-set-variable] GdkRectangle rect; ^~~~ SOperation.c: In function 'toString': SOperation.c:77:38: warning: '%d' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] if(operation->number>1) sprintf(n," %d",operation->number); ^~ SOperation.c:77:36: note: directive argument in the range [2, 2147483647] if(operation->number>1) sprintf(n," %d",operation->number); ^~~~~ SOperation.c:77:26: note: 'sprintf' output between 3 and 12 bytes into a destination of size 10 if(operation->number>1) sprintf(n," %d",operation->number); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SOperation.c:80:39: warning: ' ' directive writing 1 byte into a region of size between 0 and 9 [-Wformat-overflow=] if(operation->degree>1) sprintf(m,"%d ",operation->degree); ^ SOperation.c:80:26: note: 'sprintf' output between 3 and 12 bytes into a destination of size 10 if(operation->degree>1) sprintf(m,"%d ",operation->degree); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ SOperation.c:83:28: warning: '%s' directive writing up to 9 bytes into a region of size between 1 and 10 [-Wformat-overflow=] sprintf(operation->str,"%s%s%s",n, operation->elementType, m); ^~ SOperation.c:83:2: note: 'sprintf' output between 1 and 28 bytes into a destination of size 10 sprintf(operation->str,"%s%s%s",n, operation->elementType, m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SOperations.c -o SOperations.o GabeditXYPlot.c: In function 'gabedit_xyplot_set_x_label': GabeditXYPlot.c:10571:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ GabeditXYPlot.c: In function 'gabedit_xyplot_set_y_label': GabeditXYPlot.c:10594:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ GabeditContoursPlot.c: In function 'gabedit_contoursplot_motion_notify': GabeditContoursPlot.c:9539:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (y > (contoursplot->plotting_rect.y + contoursplot->plotting_rect.height)) ^~ GabeditContoursPlot.c:9542:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' contoursplot->distance_rect.x=contoursplot->distance_point.x; ^~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include ReactivityIndices.c -o ReactivityIndices.o UtilsCairo.c: In function 'gabedit_cairo_string': UtilsCairo.c:63:2: warning: enumeration value 'PANGO_WEIGHT_SEMILIGHT' not handled in switch [-Wswitch] switch(weight) ^~~~~~ GabeditContoursPlot.c: In function 'gabedit_contoursplot_set_x_label': GabeditContoursPlot.c:10979:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ GabeditContoursPlot.c: In function 'gabedit_contoursplot_set_y_label': GabeditContoursPlot.c:11002:13: warning: variable 'widget' set but not used [-Wunused-but-set-variable] GtkWidget* widget = NULL; ^~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpiricalMD.c -o SemiEmpiricalMD.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpirical.c -o SemiEmpirical.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` HashMapSAtoms.c -o HashMapSAtoms.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/QFF' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` Gabedit2MRQFF.c -o Gabedit2MRQFF.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SemiEmpiricalDlg.c -o SemiEmpiricalDlg.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PointGroupGabedit.c -o PointGroupGabedit.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Display' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` PointGroups.c -o PointGroups.o SemiEmpiricalDlg.c:1312:13: warning: 'runGeneric' defined but not used [-Wunused-function] static void runGeneric(MoleculeSE* mol, char* fileName, char* keys, char* genericCommand) ^~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include MathFunctions.c -o MathFunctions.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/src/Crystallography' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Crystallo.c -o Crystallo.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Geometry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsCIF.c -o UtilsCIF.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` SymmetryGabedit.c -o SymmetryGabedit.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/QFF' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditSPG.c -o GabeditSPG.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GabeditKPoints.c -o GabeditKPoints.o Crystallo.c:51:13: warning: 'transposeMatrix3D' defined but not used [-Wunused-function] static void transposeMatrix3D(gdouble mat[][3]) ^~~~~~~~~~~~~~~~~ UtilsCIF.c:198:13: warning: 'print_block' defined but not used [-Wunused-function] static void print_block(GList* list) ^~~~~~~~~~~ make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/gl2ps' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include gl2ps.c -o gl2ps.o make[2]: Entering directory '/construction/science/gabedit/GabeditSrc251_061218/spglib' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include arithmetic.c -o arithmetic.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include GTF.c -o GTF.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include cell.c -o cell.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Symmetry' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include debug.c -o debug.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include delaunay.c -o delaunay.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/MultiGrid' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include determination.c -o determination.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include TTables.c -o TTables.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Interpolation.c -o Interpolation.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include hall_symbol.c -o hall_symbol.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include Point3D.c -o Point3D.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kgrid.c -o kgrid.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include kpoint.c -o kpoint.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include mathfunc.c -o mathfunc.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/SemiEmpirical' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include niggli.c -o niggli.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable `pkg-config gtk+-2.0 --cflags` `pkg-config gtkglext-1.0 --cflags` -I/usr/local/include UtilsVASP.c -o UtilsVASP.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include overlap.c -o overlap.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include pointgroup.c -o pointgroup.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include primitive.c -o primitive.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include refinement.c -o refinement.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include sitesym_database.c -o sitesym_database.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include site_symmetry.c -o site_symmetry.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spacegroup.c -o spacegroup.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spg_database.c -o spg_database.o UtilsVASP.c: In function 'read_atom_types_vasp_xml_file': UtilsVASP.c:113:7: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if(t[i]=='<') ^ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib.c -o spglib.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spglib_f.c -o spglib_f.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Crystallography' cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include spin.c -o spin.o spglib_f.c: In function 'spg_get_international_': spglib_f.c:135:5: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] strncpy(symbol, symbol_c, length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spglib_f.c:134:14: note: length computed here length = strlen(symbol_c); ^~~~~~~~~~~~~~~~ spglib_f.c: In function 'spg_get_schoenflies_': spglib_f.c:177:5: warning: 'strncpy' output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] strncpy(symbol, symbol_c, length); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ spglib_f.c:176:14: note: length computed here length = strlen(symbol_c); ^~~~~~~~~~~~~~~~ cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include symmetry.c -o symmetry.o cc -c -Wall -pipe -O2 -fno-strict-aliasing -DENABLE_DEPRECATED -DENABLE_OMP -fopenmp -DDRAWGEOMGL -Wformat-security -Wno-unused-variable -I/usr/local/include tetrahedron_method.c -o tetrahedron_method.o make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/gl2ps' make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/spglib' make[2]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218/src/Utils' mkdir -p tmp cp src/Common/*.o src/Spectrum/*.o src/Files/*.o src/DeMon/*.o src/Gamess/*.o src/Gaussian/*.o src/Geometry/*.o src/MolecularMechanics/*.o src/Molcas/*.o src/Molpro/*.o src/Mopac/*.o src/MPQC/*.o src/MultiGrid/*.o src/NetWork/*.o src/Display/*.o src/FireFly/*.o src/NWChem/*.o src/Psicode/*.o src/Orca/*.o src/QChem/*.o src/SemiEmpirical/*.o src/Utils/*.o src/Symmetry/*.o src/VibrationalCorrections/*.o src/QFF/*.o src/IsotopeDistribution/*.o src/Crystallography/*.o gl2ps/*.o spglib/*.o tmp cc tmp/*.o -o gabedit -lX11 `pkg-config gtk+-2.0 --libs` -lpangox-1.0 `pkg-config gtkglext-1.0 --libs` -L/usr/local/lib -lGL -L/usr/lib -lGLU -lpthread -L/usr/local/lib -lgomp -g -lm gmake[1]: Leaving directory '/construction/science/gabedit/GabeditSrc251_061218' SUCCEEDED 00:00:55 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> gabedit-2.5.1_4 depends on executable: gtk-update-icon-cache - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for gabedit-2.5.1_4 ===> gabedit-2.5.1_4 depends on executable: gtk-update-icon-cache - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/ice.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/sm.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/x11.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xmu.pc - found ===> gabedit-2.5.1_4 depends on file: /usr/local/libdata/pkgconfig/xt.pc - found ===> Generating temporary packing list install -s -m 555 /construction/science/gabedit/GabeditSrc251_061218/gabedit /construction/science/gabedit/stage/usr/local/bin/ install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/utils/Others/gabedit.desktop /construction/science/gabedit/stage/usr/local/share/applications install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit16.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/16x16/apps/gabedit.png install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit24.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/24x24/apps/gabedit.png install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit32.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/32x32/apps/gabedit.png install -m 0644 /construction/science/gabedit/GabeditSrc251_061218/icons/Gabedit48.png /construction/science/gabedit/stage/usr/local/share/icons/hicolor/48x48/apps/gabedit.png ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for gabedit-2.5.1_4 file sizes/checksums [6]: 0% file sizes/checksums [6]: 100% packing files [6]: 0% packing files [6]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:06 TOTAL TIME 00:01:48