------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18.txz ===== Message from python27-2.7.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-cython-0.29.15.txz ===== Message from py27-cython-0.29.15: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/pciids-20200421.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/hwloc-1.11.11.txz Installing /packages/All/libltdl-2.4.6.txz Installing /packages/All/libevent-2.1.11.txz ===== Message from libevent-2.1.11: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/perl5-5.30.2.txz ===== Message from perl5-5.30.2: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/munge-0.5.14_1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openmpi3-3.1.6.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:22 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: The mpi4py port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-mpi4py-3.0.3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: The mpi4py port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-mpi4py-3.0.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-mpi4py-3.0.3 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: The mpi4py port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-mpi4py-3.0.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-mpi4py-3.0.3 for building => SHA256 Checksum OK for mpi4py-3.0.3.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: The mpi4py port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-mpi4py-3.0.3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-mpi4py-3.0.3 for building ===> Extracting for py27-mpi4py-3.0.3 => SHA256 Checksum OK for mpi4py-3.0.3.tar.gz. Extracted Memory Use: 11.81M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-mpi4py-3.0.3 ===> Applying ports patches for py27-mpi4py-3.0.3 ===> Cleanly applied ports patch(es) patch-setup.py SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-mpi4py-3.0.3 depends on executable: cython-2.7 - found ===> py27-mpi4py-3.0.3 depends on package: py27-setuptools>0 - found ===> py27-mpi4py-3.0.3 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py27-mpi4py-3.0.3 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi3/lib/libmpi.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-mpi4py-3.0.3 depends on executable: cython-2.7 - found ===> py27-mpi4py-3.0.3 depends on package: py27-setuptools>0 - found ===> py27-mpi4py-3.0.3 depends on file: /usr/local/bin/python2.7 - found ===> py27-mpi4py-3.0.3 depends on shared library: libmpi.so - found (/usr/local/mpi/openmpi3/lib/libmpi.so) ===> Configuring for py27-mpi4py-3.0.3 running config MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi3/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi3/bin/mpicxx /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest /usr/local/mpi/openmpi3/bin/mpicxx -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.cxx -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicxx -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.cxx _configtest.o _configtest SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-mpi4py-3.0.3 running build running build_src running build_py creating build creating build/lib.dragonfly-5.9-x86_64-2.7 creating build/lib.dragonfly-5.9-x86_64-2.7/mpi4py copying src/mpi4py/run.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py copying src/mpi4py/__main__.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py copying src/mpi4py/bench.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py copying src/mpi4py/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py creating build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/futures/__main__.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/futures/_base.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/futures/server.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/futures/pool.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/futures/_lib.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/futures/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/futures/aplus.py -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures copying src/mpi4py/MPI.pxd -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py copying src/mpi4py/__init__.pxd -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py copying src/mpi4py/libmpi.pxd -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py creating build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include creating build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.MPI.h -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.h -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi4py.i -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py copying src/mpi4py/include/mpi4py/mpi.pxi -> build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi3/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi3/bin/mpicxx checking for library 'lmpe' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -llmpe -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -llmpe collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'mpe' dylib library creating build/temp.dragonfly-5.9-x86_64-2.7 creating build/temp.dragonfly-5.9-x86_64-2.7/src creating build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/mpe.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/mpe.o creating build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi /usr/local/mpi/openmpi3/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/mpe.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libmpe.so checking for library 'vt-mpi' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -lvt-mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -lvt.mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt' dylib library /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/vt.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/vt.o /usr/local/mpi/openmpi3/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/vt.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libvt.so checking for library 'vt-mpi' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -lvt-mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt-mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.mpi' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -lvt.mpi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt.mpi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-mpi' dylib library /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/vt-mpi.o /usr/local/mpi/openmpi3/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/vt-mpi.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libvt-mpi.so checking for library 'vt-hyb' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -lvt-hyb -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt-hyb collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o checking for library 'vt.ompi' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -lvt.ompi -o _configtest /usr/libexec/binutils227/elf/ld.gold: error: cannot find -lvt.ompi collect2: error: ld returned 1 exit status failure. removing: _configtest.c _configtest.o building 'vt-hyb' dylib library /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/vt-hyb.o /usr/local/mpi/openmpi3/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/src/lib-pmpi/vt-hyb.o -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libvt-hyb.so running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi3/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi3/bin/mpicxx checking for dlopen() availability ... checking for header 'dlfcn.h' ... cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for function 'dlopen' ... cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o cc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.dl' extension cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/usr/local/include/python2.7 -c src/dynload.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/dynload.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/src/dynload.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/dl.so checking for MPI compile and link ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for missing MPI functions/symbols ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o checking for function 'MPI_Type_create_f90_integer' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Type_create_f90_real' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Type_create_f90_complex' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Status_c2f' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for function 'MPI_Status_f2c' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for symbol 'MPI_LB' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o _configtest.c: In function 'main': _configtest.c:5:3: warning: 'ompi_mpi_lb' is deprecated: MPI_LB is deprecated in MPI-2.0 [-Wdeprecated-declarations] MPI_Datatype s; s = MPI_LB; (void)s; ^~~~~~~~~~~~ In file included from _configtest.c:2: /usr/local/mpi/openmpi3/include/mpi.h:921:56: note: declared here OMPI_DECLSPEC extern struct ompi_predefined_datatype_t ompi_mpi_lb __mpi_interface_deprecated__("MPI_LB is deprecated in MPI-2.0"); ^~~~~~~~~~~ /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for symbol 'MPI_UB' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o _configtest.c: In function 'main': _configtest.c:5:3: warning: 'ompi_mpi_ub' is deprecated: MPI_UB is deprecated in MPI-2.0 [-Wdeprecated-declarations] MPI_Datatype s; s = MPI_UB; (void)s; ^~~~~~~~~~~~ In file included from _configtest.c:2: /usr/local/mpi/openmpi3/include/mpi.h:922:56: note: declared here OMPI_DECLSPEC extern struct ompi_predefined_datatype_t ompi_mpi_ub __mpi_interface_deprecated__("MPI_UB is deprecated in MPI-2.0"); ^~~~~~~~~~~ /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest checking for dlopen() availability ... checking for header 'dlfcn.h' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o success! removing: _configtest.c _configtest.o success! checking for function 'dlopen' ... /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/include/python2.7 -c _configtest.c -o _configtest.o /usr/local/mpi/openmpi3/bin/mpicc -pipe -O2 -fno-strict-aliasing _configtest.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -o _configtest success! removing: _configtest.c _configtest.o _configtest building 'mpi4py.MPI' extension /usr/local/mpi/openmpi3/bin/mpicc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -DHAVE_DLFCN_H=1 -DHAVE_DLOPEN=1 -I/usr/local/include/python2.7 -c src/MPI.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/MPI.o /usr/local/mpi/openmpi3/bin/mpicc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/src/MPI.o -L/usr/local/lib -Lbuild/temp.dragonfly-5.9-x86_64-2.7 -L/usr/local/mpi/openmpi3/lib -R/usr/local/mpi/openmpi3/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/MPI.so writing build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/mpi.cfg SUCCEEDED 00:01:23 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-mpi4py-3.0.3 depends on package: py27-setuptools>0 - found ===> py27-mpi4py-3.0.3 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-mpi4py-3.0.3 ===> py27-mpi4py-3.0.3 depends on package: py27-setuptools>0 - found ===> py27-mpi4py-3.0.3 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_src running build_py running build_clib MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi3/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi3/bin/mpicxx running build_ext MPI configuration: [mpi] from 'mpi.cfg' MPI C compiler: /usr/local/mpi/openmpi3/bin/mpicc MPI C++ compiler: /usr/local/mpi/openmpi3/bin/mpicxx running install_lib creating /construction/net/py-mpi4py/stage/usr/local/lib/python2.7 creating /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages creating /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/mpi.cfg -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/bench.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/run.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/__init__.pxd -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/MPI.pxd -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py creating /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures/_lib.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures/__main__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures/pool.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures/server.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures/_base.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures/aplus.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/futures/__init__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/__init__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py creating /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/include creating /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py/mpi4py.i -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py/mpi4py.h -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py/mpi.pxi -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py/mpi4py.MPI.h -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/include/mpi4py/mpi4py.MPI_api.h -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/include/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/libmpi.pxd -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/__main__.py -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/dl.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/MPI.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py creating /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libmpe.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libvt.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libvt-mpi.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/lib-pmpi copying build/lib.dragonfly-5.9-x86_64-2.7/mpi4py/lib-pmpi/libvt-hyb.so -> /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/lib-pmpi byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/bench.py to bench.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/run.py to run.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures/_lib.py to _lib.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures/__main__.py to __main__.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures/pool.py to pool.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures/server.py to server.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures/_base.py to _base.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures/aplus.py to aplus.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/futures/__init__.py to __init__.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/__init__.py to __init__.pyc byte-compiling /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py/__main__.py to __main__.pyc writing byte-compilation script '/tmp/tmpMZ2ECG.py' /usr/local/bin/python2.7 -O /tmp/tmpMZ2ECG.py removing /tmp/tmpMZ2ECG.py running install_egg_info running egg_info writing mpi4py.egg-info/PKG-INFO writing top-level names to mpi4py.egg-info/top_level.txt writing dependency_links to mpi4py.egg-info/dependency_links.txt reading manifest file 'mpi4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'mpi4py.egg-info/SOURCES.txt' Copying mpi4py.egg-info to /construction/net/py-mpi4py/stage/usr/local/lib/python2.7/site-packages/mpi4py-3.0.3-py2.7.egg-info running install_scripts writing list of installed files to '/construction/net/py-mpi4py/.PLIST.pymodtmp' install -m 0644 /construction/net/py-mpi4py/mpi4py-3.0.3/README.rst /construction/net/py-mpi4py/stage/usr/local/share/doc/py27-mpi4py cd /construction/net/py-mpi4py/mpi4py-3.0.3/docs && /bin/sh -c '(/usr/bin/find -Ed $1 $3 | /usr/bin/cpio -dumpl $2 >/dev/null 2>&1) && /usr/bin/find -Ed $1 $3 \( -type d -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 755 "$@"'\'' . {} + -o -type f -exec /bin/sh -c '\''cd '\''$2'\'' && chmod 0644 "$@"'\'' . {} + \)' COPYTREE_SHARE . /construction/net/py-mpi4py/stage/usr/local/share/doc/py27-mpi4py ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/mpi4py/MPI.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/mpi4py/MPI.so is linked to /usr/local/lib/libhwloc.so.5 from devel/hwloc but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhwloc.so:devel/hwloc Error: /usr/local/lib/python2.7/site-packages/mpi4py/MPI.so is linked to /usr/local/lib/libevent-2.1.so.7 from devel/libevent but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libevent-2.1.so:devel/libevent Error: /usr/local/lib/python2.7/site-packages/mpi4py/MPI.so is linked to /usr/local/lib/libevent_pthreads-2.1.so.7 from devel/libevent but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libevent_pthreads-2.1.so:devel/libevent Error: /usr/local/lib/python2.7/site-packages/mpi4py/MPI.so is linked to /usr/local/lib/libpciaccess.so.0 from devel/libpciaccess but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpciaccess.so:devel/libpciaccess Error: /usr/local/lib/python2.7/site-packages/mpi4py/MPI.so is linked to /usr/local/lib/libxml2.so.2 from textproc/libxml2 but it is not declared as a dependency Warning: you need USE_GNOME+=libxml2 Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-mpi4py-3.0.3 file sizes/checksums [165]: 0% file sizes/checksums [165]: 60% file sizes/checksums [165]: 100% packing files [165]: 0% packing files [165]: 60% packing files [165]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:03 TOTAL TIME 00:01:56