------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python37-3.7.7.txz ===== Message from python37-3.7.7: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/py37-appdirs-1.4.3.txz Installing /packages/All/py37-configargparse-1.2.3.txz Installing /packages/All/py37-datrie-0.8.txz Installing /packages/All/py37-docutils-0.15.2.txz Installing /packages/All/py37-ddt-1.2.1.txz Installing /packages/All/py37-smmap2-2.0.5.txz Installing /packages/All/py37-gitdb2-2.0.6.txz Installing /packages/All/py37-GitPython-2.1.11.txz Installing /packages/All/py37-attrs-19.3.0.txz Installing /packages/All/py37-more-itertools-8.2.0.txz Installing /packages/All/py37-zipp-0.6.0_3.txz Installing /packages/All/py37-importlib-metadata-0.23.txz Installing /packages/All/py37-six-1.14.0.txz Installing /packages/All/py37-pyrsistent-0.14.11_1.txz Installing /packages/All/py37-jsonschema-3.2.0.txz Installing /packages/All/py37-ipython_genutils-0.2.0.txz Installing /packages/All/py37-decorator-4.4.2.txz Installing /packages/All/py37-traitlets-4.3.3.txz Installing /packages/All/py37-jupyter_core-4.6.3.txz Installing /packages/All/sqlite3-3.31.1_1,1.txz Installing /packages/All/py37-sqlite3-3.7.7_7.txz Installing /packages/All/py37-nbformat-5.0.6.txz Installing /packages/All/py37-psutil-5.7.0.txz Installing /packages/All/py37-ratelimiter-1.2.0_1.txz Installing /packages/All/py37-certifi-2020.4.5.1.txz Installing /packages/All/py37-chardet-3.0.4_3.txz Installing /packages/All/py37-idna-2.8.txz Installing /packages/All/py37-pysocks-1.7.1.txz Installing /packages/All/py37-asn1crypto-1.3.0.txz Installing /packages/All/py37-pycparser-2.19.txz Installing /packages/All/py37-cffi-1.14.0.txz Installing /packages/All/py37-cryptography-2.6.1.txz Installing /packages/All/py37-openssl-19.0.0.txz Installing /packages/All/py37-urllib3-1.25.7,1.txz ===== Message from py37-urllib3-1.25.7,1: -- Since version 1.25 HTTPS connections are now verified by default which is done via "cert_reqs = 'CERT_REQUIRED'". While certificate verification can be disabled via "cert_reqs = 'CERT_NONE'", it's highly recommended to leave it on. Various consumers of net/py-urllib3 already have implemented routines that either explicitly enable or disable HTTPS certificate verification (e.g. via configuration settings, CLI arguments, etc.). Yet it may happen that there are still some consumers which don't explicitly enable/disable certificate verification for HTTPS connections which could then lead to errors (as is often the case with self-signed certificates). In case of an error one should try first to temporarily disable certificate verification of the problematic urllib3 consumer to see if that approach will remedy the issue. Installing /packages/All/py37-requests-2.22.0.txz Installing /packages/All/py37-toposort-1.5.txz Installing /packages/All/py37-wrapt-1.12.1.txz Installing /packages/All/py37-yaml-5.3.1.txz SUCCEEDED 00:00:14 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> snakemake-5.17.0 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> snakemake-5.17.0 depends on file: /usr/local/sbin/pkg - found => snakemake-5.17.0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/s/snakemake/snakemake-5.17.0.tar.gz snakemake-5.17.0.tar.gz 0% of 208 kB 0 Bps snakemake-5.17.0.tar.gz 208 kB 18 MBps 00s ===> Fetching all distfiles required by snakemake-5.17.0 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> snakemake-5.17.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by snakemake-5.17.0 for building => SHA256 Checksum OK for snakemake-5.17.0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> snakemake-5.17.0 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by snakemake-5.17.0 for building ===> Extracting for snakemake-5.17.0 => SHA256 Checksum OK for snakemake-5.17.0.tar.gz. Extracted Memory Use: 1.11M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for snakemake-5.17.0 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> snakemake-5.17.0 depends on package: py37-setuptools>0 - found ===> snakemake-5.17.0 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> snakemake-5.17.0 depends on package: py37-setuptools>0 - found ===> snakemake-5.17.0 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for snakemake-5.17.0 running config SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for snakemake-5.17.0 running build running build_py creating build creating build/lib creating build/lib/snakemake copying snakemake/__init__.py -> build/lib/snakemake copying snakemake/__main__.py -> build/lib/snakemake copying snakemake/_version.py -> build/lib/snakemake copying snakemake/benchmark.py -> build/lib/snakemake copying snakemake/checkpoints.py -> build/lib/snakemake copying snakemake/common.py -> build/lib/snakemake copying snakemake/cwl.py -> build/lib/snakemake copying snakemake/dag.py -> build/lib/snakemake copying snakemake/decorators.py -> build/lib/snakemake copying snakemake/exceptions.py -> build/lib/snakemake copying snakemake/executors.py -> build/lib/snakemake copying snakemake/gui.py -> build/lib/snakemake copying snakemake/io.py -> build/lib/snakemake copying snakemake/jobs.py -> build/lib/snakemake copying snakemake/logging.py -> build/lib/snakemake copying snakemake/notebook.py -> build/lib/snakemake copying snakemake/output_index.py -> build/lib/snakemake copying snakemake/parser.py -> build/lib/snakemake copying snakemake/persistence.py -> build/lib/snakemake copying snakemake/resources.py -> build/lib/snakemake copying snakemake/rules.py -> build/lib/snakemake copying snakemake/scheduler.py -> build/lib/snakemake copying snakemake/script.py -> build/lib/snakemake copying snakemake/shell.py -> build/lib/snakemake copying snakemake/stats.py -> build/lib/snakemake copying snakemake/utils.py -> build/lib/snakemake copying snakemake/workflow.py -> build/lib/snakemake copying snakemake/wrapper.py -> build/lib/snakemake creating build/lib/snakemake/remote copying snakemake/remote/AzureStorage.py -> build/lib/snakemake/remote copying snakemake/remote/EGA.py -> build/lib/snakemake/remote copying snakemake/remote/FTP.py -> build/lib/snakemake/remote copying snakemake/remote/GS.py -> build/lib/snakemake/remote copying snakemake/remote/HTTP.py -> build/lib/snakemake/remote copying snakemake/remote/NCBI.py -> build/lib/snakemake/remote copying snakemake/remote/S3.py -> build/lib/snakemake/remote copying snakemake/remote/S3Mocked.py -> build/lib/snakemake/remote copying snakemake/remote/SFTP.py -> build/lib/snakemake/remote copying snakemake/remote/XRootD.py -> build/lib/snakemake/remote copying snakemake/remote/__init__.py -> build/lib/snakemake/remote copying snakemake/remote/dropbox.py -> build/lib/snakemake/remote copying snakemake/remote/gfal.py -> build/lib/snakemake/remote copying snakemake/remote/gridftp.py -> build/lib/snakemake/remote copying snakemake/remote/iRODS.py -> build/lib/snakemake/remote copying snakemake/remote/webdav.py -> build/lib/snakemake/remote creating build/lib/snakemake/report copying snakemake/report/__init__.py -> build/lib/snakemake/report creating build/lib/snakemake/caching copying snakemake/caching/__init__.py -> build/lib/snakemake/caching copying snakemake/caching/hash.py -> build/lib/snakemake/caching copying snakemake/caching/local.py -> build/lib/snakemake/caching copying snakemake/caching/remote.py -> build/lib/snakemake/caching creating build/lib/snakemake/deployment copying snakemake/deployment/__init__.py -> build/lib/snakemake/deployment copying snakemake/deployment/conda.py -> build/lib/snakemake/deployment copying snakemake/deployment/env_modules.py -> build/lib/snakemake/deployment copying snakemake/deployment/singularity.py -> build/lib/snakemake/deployment creating build/lib/snakemake/linting copying snakemake/linting/__init__.py -> build/lib/snakemake/linting copying snakemake/linting/links.py -> build/lib/snakemake/linting copying snakemake/linting/rules.py -> build/lib/snakemake/linting copying snakemake/linting/snakefiles.py -> build/lib/snakemake/linting copying snakemake/report.css -> build/lib/snakemake copying snakemake/jobscript.sh -> build/lib/snakemake copying snakemake/gui.html -> build/lib/snakemake copying snakemake/report/report.html -> build/lib/snakemake/report copying snakemake/report/table.html -> build/lib/snakemake/report UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '5.17.0' SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> snakemake-5.17.0 depends on package: py37-appdirs>0 - found ===> snakemake-5.17.0 depends on package: py37-configargparse>0 - found ===> snakemake-5.17.0 depends on package: py37-datrie>0 - found ===> snakemake-5.17.0 depends on package: py37-docutils>0 - found ===> snakemake-5.17.0 depends on package: py37-GitPython>0 - found ===> snakemake-5.17.0 depends on package: py37-jsonschema>0 - found ===> snakemake-5.17.0 depends on package: py37-nbformat>0 - found ===> snakemake-5.17.0 depends on package: py37-psutil>0 - found ===> snakemake-5.17.0 depends on package: py37-ratelimiter>0 - found ===> snakemake-5.17.0 depends on package: py37-requests>0 - found ===> snakemake-5.17.0 depends on package: py37-toposort>0 - found ===> snakemake-5.17.0 depends on package: py37-wrapt>0 - found ===> snakemake-5.17.0 depends on package: py37-yaml>0 - found ===> snakemake-5.17.0 depends on package: py37-setuptools>0 - found ===> snakemake-5.17.0 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for snakemake-5.17.0 ===> snakemake-5.17.0 depends on package: py37-appdirs>0 - found ===> snakemake-5.17.0 depends on package: py37-configargparse>0 - found ===> snakemake-5.17.0 depends on package: py37-datrie>0 - found ===> snakemake-5.17.0 depends on package: py37-docutils>0 - found ===> snakemake-5.17.0 depends on package: py37-GitPython>0 - found ===> snakemake-5.17.0 depends on package: py37-jsonschema>0 - found ===> snakemake-5.17.0 depends on package: py37-nbformat>0 - found ===> snakemake-5.17.0 depends on package: py37-psutil>0 - found ===> snakemake-5.17.0 depends on package: py37-ratelimiter>0 - found ===> snakemake-5.17.0 depends on package: py37-requests>0 - found ===> snakemake-5.17.0 depends on package: py37-toposort>0 - found ===> snakemake-5.17.0 depends on package: py37-wrapt>0 - found ===> snakemake-5.17.0 depends on package: py37-yaml>0 - found ===> snakemake-5.17.0 depends on package: py37-setuptools>0 - found ===> snakemake-5.17.0 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py UPDATING build/lib/snakemake/_version.py set build/lib/snakemake/_version.py to '5.17.0' running install_lib creating /construction/misc/snakemake/stage/usr/local/lib/python3.7 creating /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages creating /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/_version.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/persistence.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake creating /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching copying build/lib/snakemake/caching/local.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching copying build/lib/snakemake/caching/remote.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching copying build/lib/snakemake/caching/hash.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching copying build/lib/snakemake/caching/__init__.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching copying build/lib/snakemake/logging.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/exceptions.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake creating /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting copying build/lib/snakemake/linting/rules.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting copying build/lib/snakemake/linting/snakefiles.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting copying build/lib/snakemake/linting/__init__.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting copying build/lib/snakemake/linting/links.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting copying build/lib/snakemake/__init__.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/common.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/io.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake creating /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/singularity.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/env_modules.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/conda.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment copying build/lib/snakemake/deployment/__init__.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment copying build/lib/snakemake/workflow.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/output_index.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/__main__.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/dag.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/jobs.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/decorators.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake creating /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/__init__.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/gfal.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/gridftp.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/SFTP.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/GS.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/S3.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/dropbox.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/XRootD.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/webdav.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/NCBI.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/AzureStorage.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/S3Mocked.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/iRODS.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/FTP.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/HTTP.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/remote/EGA.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote copying build/lib/snakemake/jobscript.sh -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/resources.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake creating /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/report copying build/lib/snakemake/report/table.html -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/report copying build/lib/snakemake/report/__init__.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/report copying build/lib/snakemake/report/report.html -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/report copying build/lib/snakemake/wrapper.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/script.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/parser.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/checkpoints.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/utils.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/report.css -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/cwl.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/gui.html -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/notebook.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/shell.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/benchmark.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/stats.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/scheduler.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/rules.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/gui.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake copying build/lib/snakemake/executors.py -> /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/_version.py to _version.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/persistence.py to persistence.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching/local.py to local.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching/remote.py to remote.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching/hash.py to hash.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/caching/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/logging.py to logging.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/exceptions.py to exceptions.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting/rules.py to rules.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting/snakefiles.py to snakefiles.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/linting/links.py to links.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/common.py to common.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/io.py to io.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment/singularity.py to singularity.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment/env_modules.py to env_modules.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment/conda.py to conda.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/deployment/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/workflow.py to workflow.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/output_index.py to output_index.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/__main__.py to __main__.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/dag.py to dag.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/jobs.py to jobs.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/decorators.py to decorators.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/gfal.py to gfal.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/gridftp.py to gridftp.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/SFTP.py to SFTP.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/GS.py to GS.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/S3.py to S3.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/dropbox.py to dropbox.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/XRootD.py to XRootD.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/webdav.py to webdav.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/NCBI.py to NCBI.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/AzureStorage.py to AzureStorage.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/S3Mocked.py to S3Mocked.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/iRODS.py to iRODS.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/FTP.py to FTP.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/HTTP.py to HTTP.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/remote/EGA.py to EGA.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/resources.py to resources.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/report/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/wrapper.py to wrapper.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/script.py to script.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/parser.py to parser.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/checkpoints.py to checkpoints.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/utils.py to utils.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/cwl.py to cwl.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/notebook.py to notebook.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/shell.py to shell.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/benchmark.py to benchmark.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/stats.py to stats.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/scheduler.py to scheduler.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/rules.py to rules.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/gui.py to gui.cpython-37.pyc byte-compiling /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake/executors.py to executors.cpython-37.pyc writing byte-compilation script '/tmp/tmpi5untl92.py' /usr/local/bin/python3.7 /tmp/tmpi5untl92.py removing /tmp/tmpi5untl92.py running install_egg_info running egg_info writing snakemake.egg-info/PKG-INFO writing dependency_links to snakemake.egg-info/dependency_links.txt writing entry points to snakemake.egg-info/entry_points.txt writing requirements to snakemake.egg-info/requires.txt writing top-level names to snakemake.egg-info/top_level.txt reading manifest file 'snakemake.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'snakemake.egg-info/SOURCES.txt' Copying snakemake.egg-info to /construction/misc/snakemake/stage/usr/local/lib/python3.7/site-packages/snakemake-5.17.0-py3.7.egg-info running install_scripts Installing snakemake script to /construction/misc/snakemake/stage/usr/local/bin Installing snakemake-bash-completion script to /construction/misc/snakemake/stage/usr/local/bin writing list of installed files to '/construction/misc/snakemake/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for snakemake-5.17.0 file sizes/checksums [185]: 0% file sizes/checksums [185]: 54% file sizes/checksums [185]: 100% packing files [185]: 0% packing files [185]: 54% packing files [185]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:02 TOTAL TIME 00:00:27