------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18.txz ===== Message from python27-2.7.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-numpy-1.16.5_5,1.txz ===== Message from py27-numpy-1.16.5_5,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/freetype2-2.10.1.txz ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/png-1.6.37.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/tcl86-8.6.10.txz Installing /packages/All/py27-six-1.14.0.txz ===== Message from py27-six-1.14.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-cycler-0.10.0.txz ===== Message from py27-cycler-0.10.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-dateutil-2.8.0.txz ===== Message from py27-dateutil-2.8.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pytz-2020.1,1.txz ===== Message from py27-pytz-2020.1,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pyparsing-2.4.7.txz ===== Message from py27-pyparsing-2.4.7: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-futures-3.3.0.txz ===== Message from py27-futures-3.3.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-singledispatch-3.4.0.3_1.txz ===== Message from py27-singledispatch-3.4.0.3_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-backports_abc-0.5.txz ===== Message from py27-backports_abc-0.5: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-tornado-5.1.1.txz ===== Message from py27-tornado-5.1.1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-kiwisolver-1.1.0.txz ===== Message from py27-kiwisolver-1.1.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9_1,1.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/tk86-8.6.10_1.txz Installing /packages/All/py27-tkinter-2.7.18_6.txz ===== Message from py27-tkinter-2.7.18_6: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-backports-1.txz ===== Message from py27-backports-1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-backports.functools_lru_cache-1.5.txz ===== Message from py27-backports.functools_lru_cache-1.5: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-matplotlib-2.2.4_2.txz ===== Message from py27-matplotlib-2.2.4_2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-scipy-1.2.2_1.txz ===== Message from py27-scipy-1.2.2_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/lapack-3.5.0_8.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:08 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- /!\ py27-pymc-2.3.6_3,1: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- /!\ py27-pymc-2.3.6_3,1: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pymc-2.3.6_3,1 for building SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- /!\ py27-pymc-2.3.6_3,1: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pymc-2.3.6_3,1 for building => SHA256 Checksum OK for pymc-2.3.6.tar.gz. SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- /!\ py27-pymc-2.3.6_3,1: Makefile warnings, please consider fixing /!\ lang/python27 reached End of Life and will be removed on 2020-12-31, consider converting to a modern version of python ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-pymc-2.3.6_3,1 for building ===> Extracting for py27-pymc-2.3.6_3,1 => SHA256 Checksum OK for pymc-2.3.6.tar.gz. Extracted Memory Use: 1.95M SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-pymc-2.3.6_3,1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-pymc-2.3.6_3,1 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-matplotlib>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-scipy>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-setuptools>0 - found ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py27-pymc-2.3.6_3,1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> py27-pymc-2.3.6_3,1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-pymc-2.3.6_3,1 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-matplotlib>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-scipy>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-setuptools>0 - found ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/bin/python2.7 - found ===> py27-pymc-2.3.6_3,1 depends on shared library: liblapack.so - found (/usr/local/lib/liblapack.so) ===> py27-pymc-2.3.6_3,1 depends on shared library: libblas.so - found (/usr/local/lib/libblas.so) ===> Configuring for py27-pymc-2.3.6_3,1 running config SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-pymc-2.3.6_3,1 running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pymc.flib" sources f2py options: ['skip:ppnd7'] f2py:> build/src.dragonfly-5.9-x86_64-2.7/pymc/flibmodule.c creating build creating build/src.dragonfly-5.9-x86_64-2.7 creating build/src.dragonfly-5.9-x86_64-2.7/pymc IOError: [Errno 2] No such file or directory: 'skip:ppnd7'. Skipping file "skip:ppnd7". Reading fortran codes... Reading file 'pymc/flib.f' (format:fix,strict) updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(na)'. Ignoring. updatevars:gradlike: attempt to change 'dimension(nx)' to 'dimension(nb)'. Ignoring. updatevars:gradlike: attempt to change 'dimension (nmu)' to 'dimension(nmu)'. Ignoring. updatevars:gradlike: attempt to change 'dimension (na)' to 'dimension(na)'. Ignoring. Reading file 'pymc/histogram.f' (format:fix,strict) rmbadname1: Replacing "index" with "index_bn". Reading file 'pymc/flib_blas.f' (format:fix,strict) Reading file 'pymc/blas_wrap.f' (format:fix,strict) Reading file 'pymc/math.f' (format:fix,strict) Reading file 'pymc/gibbsit.f' (format:fix,strict) updatevars: "character curterms(20)*24" is mapped to "character curterms(20,24)" updatevars: "character septerms(20)*24" is mapped to "character septerms(20,24)" updatevars: "character tokens(maxtok)*(*)" is mapped to "character tokens(maxtok,(*))" rmbadname1: Replacing "index" with "index_bn". rmbadname1: Replacing "len" with "len_bn". Line #1125 in pymc/gibbsit.f:" DOUBLE PRECISION INTENT(CACHE,HIDE), DIMENSION(2*ITERACNT) :: WORK" updatevars: attempt to change the type of "work" ("integer") to "double precision". Ignoring. Post-processing... Block: flib Block: symmetrize Block: logsum Block: logsum_cpx Block: combinationln {'attrspec': ['intent(hide)']} In: :flib:pymc/flib.f:expand_triangular vars2fortran: No typespec for argument "nf". {'attrspec': ['intent(hide)']} In: :flib:pymc/flib.f:expand_triangular vars2fortran: No typespec for argument "n". Block: expand_triangular Block: mod_to_circle Block: standardize Block: gammln Block: mvgammln Block: factrl Block: factln Block: normcdf Block: sn_like Block: rskewnorm Block: uniform_like Block: uniform_grad_x Block: uniform_grad_l Block: uniform_grad_u Block: duniform_like Block: exponweib Block: exponweib_gx Block: exponweib_gl Block: exponweib_gk Block: exponweib_ga Block: exponweib_gs Block: exponweib_ppf Block: constrain Block: poisson Block: poisson_gmu Block: trpoisson Block: trpoisson_gmu Block: t Block: t_grad_x Block: t_grad_nu Block: chi2_grad_nu Block: nct Block: multinomial Block: weibull Block: weibull_gx Block: weibull_ga Block: weibull_gb Block: logistic Block: normal Block: normal_grad_tau Block: normal_grad_x Block: normal_grad_mu Block: hnormal Block: hnormal_gradx Block: hnormal_gradtau Block: lognormal Block: lognormal_gradx Block: lognormal_gradmu Block: lognormal_gradtau Block: arlognormal Block: gev Block: gev_ppf Block: gamma Block: gamma_grad_x Block: gamma_grad_alpha Block: gamma_grad_beta Block: igamma Block: igamma_grad_x Block: igamma_grad_alpha Block: igamma_grad_beta Block: hyperg Block: geometric Block: geometric_gp Block: dirichlet Block: cauchy Block: cauchy_grad_x Block: cauchy_grad_a Block: cauchy_grad_b Block: negbin Block: negbin2 Block: negbin2_gmu Block: negbin2_ga Block: binomial Block: binomial_gp Block: bernoulli Block: bern_grad_p Block: beta_like Block: beta_grad_x Block: beta_grad_a Block: beta_grad_b Block: betabin_like Block: betabin_ga Block: betabin_gb Block: mvhyperg Block: dirmultinom Block: wishart Block: trace Block: gamfun Block: gammds Block: psi Block: gser Block: gcf Block: gammq Block: trans Block: matmult Block: dtrm Block: elgs Block: bico Block: chol Block: hermpoly Block: set_uniform Block: categorical Block: rcat Block: logit Block: invlogit Block: stukel_logit Block: stukel_invlogit Block: vonmises Block: pareto Block: truncated_pareto Block: fixed_binsize Block: weighted_fixed_binsize Block: fixed_binsize_nd sortvarnames: failed to compute dependencies because of cyclic dependencies between n, nx, bin0, delta, x, d {'attrspec': ['dimension(n)']} In: :flib:pymc/histogram.f:qsorti vars2fortran: No typespec for argument "ord". Block: qsorti Block: checksymm Block: chol_mvnorm Block: cov_mvnorm Block: prec_mvnorm Block: blas_wishart Block: blas_wishart_cov {'attrspec': ['intent(hide)']} In: :flib:pymc/blas_wrap.f:dcopy_wrap vars2fortran: No typespec for argument "nx". Block: dcopy_wrap Block: dtrmm_wrap Block: dtrsm_wrap Block: dpotrf_wrap Block: dchdc_wrap Block: dpotrs_wrap Block: ppnd16 Block: calerf Block: derf Block: derfc Block: derfcx Block: gibbsit Block: matinput Block: vecinput Block: oneparse Block: gibbmain Block: empquant Block: dichot Block: thin Block: mctest Block: indtest Block: mcest Block: ppnd7 Block: ssort Post-processing (stage 2)... Building modules... Building module "flib"... Constructing wrapper function "symmetrize"... symmetrize(c,[cmin,cmax]) Constructing wrapper function "logsum"... s = logsum(x) Constructing wrapper function "logsum_cpx"... s = logsum_cpx(x) Creating wrapper for Fortran function "combinationln"("combinationln")... Constructing wrapper function "combinationln"... combinationln = combinationln(n,k) Constructing wrapper function "expand_triangular"... t = expand_triangular(d,f) Constructing wrapper function "mod_to_circle"... mx = mod_to_circle(x,u,l) Constructing wrapper function "standardize"... z = standardize(x,loc,scale) Creating wrapper for Fortran function "gammln"("gammln")... Constructing wrapper function "gammln"... gammln = gammln(xx) Creating wrapper for Fortran function "mvgammln"("mvgammln")... Constructing wrapper function "mvgammln"... mvgammln = mvgammln(x,k) Creating wrapper for Fortran function "factrl"("factrl")... Constructing wrapper function "factrl"... factrl = factrl(n) Creating wrapper for Fortran function "factln"("factln")... Constructing wrapper function "factln"... factln = factln(n) Constructing wrapper function "normcdf"... normcdf(x) Constructing wrapper function "sn_like"... like = sn_like(x,mu,tau,alph) Constructing wrapper function "rskewnorm"... x = rskewnorm(nx,mu,tau,alph,rn) Constructing wrapper function "uniform_like"... like = uniform_like(x,lower,upper) Constructing wrapper function "uniform_grad_x"... gradxlike = uniform_grad_x(x,lower,upper) Constructing wrapper function "uniform_grad_l"... gradllike = uniform_grad_l(x,lower,upper) Constructing wrapper function "uniform_grad_u"... gradulike = uniform_grad_u(x,lower,upper) Constructing wrapper function "duniform_like"... like = duniform_like(x,lower,upper) Constructing wrapper function "exponweib"... like = exponweib(x,a,c,loc,scale) Constructing wrapper function "exponweib_gx"... gradlike = exponweib_gx(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_gl"... gradlike = exponweib_gl(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_gk"... gradlike = exponweib_gk(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_ga"... gradlike = exponweib_ga(x,alpha,k,loc,scale,[nk]) Constructing wrapper function "exponweib_gs"... gradlike = exponweib_gs(x,alpha,k,loc,scale) Constructing wrapper function "exponweib_ppf"... ppf = exponweib_ppf(q,a,c) Constructing wrapper function "constrain"... pass = constrain(x,a,b,allow_equal) Constructing wrapper function "poisson"... like = poisson(x,mu) Constructing wrapper function "poisson_gmu"... gradlike = poisson_gmu(x,mu) Constructing wrapper function "trpoisson"... like = trpoisson(x,mu,k) Constructing wrapper function "trpoisson_gmu"... gradlike = trpoisson_gmu(x,mu,k) Constructing wrapper function "t"... like = t(x,nu) Constructing wrapper function "t_grad_x"... gradlikex = t_grad_x(x,nu) Constructing wrapper function "t_grad_nu"... gradlikenu = t_grad_nu(x,nu) Constructing wrapper function "chi2_grad_nu"... gradlikenu = chi2_grad_nu(x,nu) Constructing wrapper function "nct"... like = nct(x,mu,lam,nu) Constructing wrapper function "multinomial"... like = multinomial(x,n,p) Constructing wrapper function "weibull"... like = weibull(x,alpha,beta) Constructing wrapper function "weibull_gx"... gradlike = weibull_gx(x,alpha,beta) Constructing wrapper function "weibull_ga"... gradlike = weibull_ga(x,alpha,beta) Constructing wrapper function "weibull_gb"... gradlike = weibull_gb(x,alpha,beta) Constructing wrapper function "logistic"... like = logistic(x,mu,tau) Constructing wrapper function "normal"... like = normal(x,mu,tau) Constructing wrapper function "normal_grad_tau"... grad_tau_like = normal_grad_tau(x,mu,tau) Constructing wrapper function "normal_grad_x"... grad_x_like = normal_grad_x(x,mu,tau) Constructing wrapper function "normal_grad_mu"... gradmulike = normal_grad_mu(x,mu,tau) Constructing wrapper function "hnormal"... like = hnormal(x,tau) Constructing wrapper function "hnormal_gradx"... gradlike = hnormal_gradx(x,tau) Constructing wrapper function "hnormal_gradtau"... gradlike = hnormal_gradtau(x,tau) Constructing wrapper function "lognormal"... like = lognormal(x,mu,tau) Constructing wrapper function "lognormal_gradx"... gradlike = lognormal_gradx(x,mu,tau) Constructing wrapper function "lognormal_gradmu"... gradlike = lognormal_gradmu(x,mu,tau) Constructing wrapper function "lognormal_gradtau"... gradlike = lognormal_gradtau(x,mu,tau) Constructing wrapper function "arlognormal"... like = arlognormal(x,mu,sigma,rho,beta) Constructing wrapper function "gev"... like = gev(x,xi,mu,sigma) Constructing wrapper function "gev_ppf"... ppf = gev_ppf(q,xi) Constructing wrapper function "gamma"... like = gamma(x,alpha,beta) Constructing wrapper function "gamma_grad_x"... gradxlike = gamma_grad_x(x,alpha,beta) Constructing wrapper function "gamma_grad_alpha"... gradalphalike = gamma_grad_alpha(x,alpha,beta) Constructing wrapper function "gamma_grad_beta"... gradbetalike = gamma_grad_beta(x,alpha,beta) Constructing wrapper function "igamma"... like = igamma(x,alpha,beta) Constructing wrapper function "igamma_grad_x"... gradxlike = igamma_grad_x(x,alpha,beta) Constructing wrapper function "igamma_grad_alpha"... gradalphalike = igamma_grad_alpha(x,alpha,beta) Constructing wrapper function "igamma_grad_beta"... gradbetalike = igamma_grad_beta(x,alpha,beta) Constructing wrapper function "hyperg"... like = hyperg(x,draws,success,total) Constructing wrapper function "geometric"... like = geometric(x,p) Constructing wrapper function "geometric_gp"... gradlike = geometric_gp(x,p) Constructing wrapper function "dirichlet"... like = dirichlet(x,theta) Constructing wrapper function "cauchy"... like = cauchy(x,alpha,beta) Constructing wrapper function "cauchy_grad_x"... gradlike = cauchy_grad_x(x,alpha,beta) Constructing wrapper function "cauchy_grad_a"... gradlike = cauchy_grad_a(x,alpha,beta) Constructing wrapper function "cauchy_grad_b"... gradlike = cauchy_grad_b(x,alpha,beta) Constructing wrapper function "negbin"... like = negbin(x,r,p) Constructing wrapper function "negbin2"... like = negbin2(x,mu,a) Constructing wrapper function "negbin2_gmu"... gradlike = negbin2_gmu(x,mu,alpha) Constructing wrapper function "negbin2_ga"... gradlike = negbin2_ga(x,mu,alpha) Constructing wrapper function "binomial"... like = binomial(x,n,p) Constructing wrapper function "binomial_gp"... gradlike = binomial_gp(x,n,p) Constructing wrapper function "bernoulli"... like = bernoulli(x,p) Constructing wrapper function "bern_grad_p"... grad_like = bern_grad_p(x,p) Constructing wrapper function "beta_like"... like = beta_like(x,alpha,beta) Constructing wrapper function "beta_grad_x"... gradlikex = beta_grad_x(x,alpha,beta) Constructing wrapper function "beta_grad_a"... gradlikea = beta_grad_a(x,alpha,beta) Constructing wrapper function "beta_grad_b"... gradlikeb = beta_grad_b(x,alpha,beta) Constructing wrapper function "betabin_like"... like = betabin_like(x,alpha,beta,n) Constructing wrapper function "betabin_ga"... gradlike = betabin_ga(x,alpha,beta,n) Constructing wrapper function "betabin_gb"... gradlike = betabin_gb(x,alpha,beta,n) Constructing wrapper function "mvhyperg"... like = mvhyperg(x,color) Constructing wrapper function "dirmultinom"... like = dirmultinom(x,theta) Constructing wrapper function "wishart"... like = wishart(x,n,sigma) Constructing wrapper function "trace"... trace(mat,tr,[k]) Constructing wrapper function "gamfun"... gx = gamfun(xx) Creating wrapper for Fortran function "gammds"("gammds")... Constructing wrapper function "gammds"... gammds = gammds(y,p,ifault) Creating wrapper for Fortran function "psi"("psi")... Constructing wrapper function "psi"... psi = psi(x) Constructing wrapper function "gser"... gser(gamser,a,x,gln) Constructing wrapper function "gcf"... gcf(gammcf,a,x,gln) Creating wrapper for Fortran function "gammq"("gammq")... Constructing wrapper function "gammq"... gammq = gammq(a,x) Constructing wrapper function "trans"... tmat = trans(mat) Constructing wrapper function "matmult"... prod = matmult(mat1,mat2) Constructing wrapper function "dtrm"... d = dtrm(a) Constructing wrapper function "elgs"... elgs(a,indx,[n]) Creating wrapper for Fortran function "bico"("bico")... Constructing wrapper function "bico"... bico = bico(n,k) Constructing wrapper function "chol"... c = chol(a,[n]) Constructing wrapper function "hermpoly"... cx = hermpoly(n,x) Constructing wrapper function "set_uniform"... set_uniform(seed1,seed2) Constructing wrapper function "categorical"... like = categorical(x,p) Constructing wrapper function "rcat"... s = rcat(p,rands) Constructing wrapper function "logit"... ltheta = logit(theta) Constructing wrapper function "invlogit"... theta = invlogit(ltheta) Constructing wrapper function "stukel_logit"... ltheta = stukel_logit(theta,a1,a2,[overwrite_theta]) Constructing wrapper function "stukel_invlogit"... theta = stukel_invlogit(ltheta,a1,a2,[overwrite_ltheta]) Constructing wrapper function "vonmises"... like = vonmises(x,mu,kappa) Constructing wrapper function "pareto"... like = pareto(x,alpha,m) Constructing wrapper function "truncated_pareto"... like = truncated_pareto(x,alpha,m,b) Constructing wrapper function "fixed_binsize"... h = fixed_binsize(x,bin0,delta,n) Constructing wrapper function "weighted_fixed_binsize"... h = weighted_fixed_binsize(x,w,bin0,delta,n) Constructing wrapper function "fixed_binsize_nd"... count = fixed_binsize_nd(x,bin0,delta,n,nc) Constructing wrapper function "qsorti"... qsorti(ord,a,[n]) Constructing wrapper function "checksymm"... cs = checksymm(x) Constructing wrapper function "chol_mvnorm"... like = chol_mvnorm(x,mu,sig,[overwrite_x,overwrite_mu]) Constructing wrapper function "cov_mvnorm"... like = cov_mvnorm(x,mu,c,[overwrite_x,overwrite_mu,overwrite_c]) Constructing wrapper function "prec_mvnorm"... like = prec_mvnorm(x,mu,tau,[overwrite_x,overwrite_mu,overwrite_tau]) Constructing wrapper function "blas_wishart"... like = blas_wishart(x,n,t,[overwrite_x,overwrite_t]) Constructing wrapper function "blas_wishart_cov"... like = blas_wishart_cov(x,n,v,[overwrite_x,overwrite_v]) Constructing wrapper function "dcopy_wrap"... dcopy_wrap(x,y) Constructing wrapper function "dtrmm_wrap"... dtrmm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dtrsm_wrap"... dtrsm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dpotrf_wrap"... info = dpotrf_wrap(a) Constructing wrapper function "dchdc_wrap"... piv,info = dchdc_wrap(a) Constructing wrapper function "dpotrs_wrap"... info = dpotrs_wrap(chol_fac,b,[uplo]) Creating wrapper for Fortran function "ppnd16"("ppnd16")... Constructing wrapper function "ppnd16"... ppnd16 = ppnd16(p,ifault) Constructing wrapper function "calerf"... calerf(arg,result,jint) Creating wrapper for Fortran function "derf"("derf")... Constructing wrapper function "derf"... derf = derf(x) Creating wrapper for Fortran function "derfc"("derfc")... Constructing wrapper function "derfc"... derfc = derfc(x) Creating wrapper for Fortran function "derfcx"("derfcx")... Constructing wrapper function "derfcx"... derfcx = derfcx(x) Constructing wrapper function "matinput"... matinput(uid,matout,rowused,colused,r15,[rowmax,colmax]) Constructing wrapper function "vecinput"... vecinput(uid,vecout,vecused,r15,[vecmax]) Constructing wrapper function "oneparse"... getarrdims:warning: assumed shape array, using 0 instead of '(*)' oneparse(instring,delimit,tokens,tokcnt,r15,[maxtok]) Constructing wrapper function "gibbmain"... nmin,kthin,nburn,nprec,kmind = gibbmain(original,q,r,s,epsilon) Creating wrapper for Fortran function "empquant"("empquant")... Constructing wrapper function "empquant"... getarrdims:warning: assumed shape array, using 0 instead of '*' empquant = empquant(data,q,work,[iteracnt]) Constructing wrapper function "dichot"... dichot(data,cutpt,zt,[iteracnt]) Constructing wrapper function "thin"... thin(series,kthin,result,thincnt,[iteracnt]) Constructing wrapper function "mctest"... mctest(data,g2,bic,[datacnt]) Constructing wrapper function "indtest"... indtest(data,g2,bic,[datacnt]) Constructing wrapper function "mcest"... mcest(data,alpha,beta,[datacnt]) Creating wrapper for Fortran function "ppnd7"("ppnd7")... Constructing wrapper function "ppnd7"... ppnd7 = ppnd7(p,ifault) Constructing wrapper function "ssort"... ssort(x,y,kflag,[n]) Constructing COMMON block support for "unif_seeds"... s1,s2 Wrote C/API module "flib" to file "build/src.dragonfly-5.9-x86_64-2.7/pymc/flibmodule.c" Fortran 77 wrappers are saved to "build/src.dragonfly-5.9-x86_64-2.7/pymc/flib-f2pywrappers.f" adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc' to include_dirs. creating build/src.dragonfly-5.9-x86_64-2.7/build creating build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7 creating build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc adding 'build/src.dragonfly-5.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. building extension "pymc.LazyFunction" sources building extension "pymc.Container_values" sources building extension "pymc.gp.linalg_utils" sources f2py options: [] f2py:> build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c creating build/src.dragonfly-5.9-x86_64-2.7/pymc/gp Reading fortran codes... Reading file 'pymc/gp/linalg_utils.f' (format:fix,strict) Reading file 'pymc/blas_wrap.f' (format:fix,strict) Post-processing... Block: linalg_utils Block: remove_duplicates Block: check_repeats Block: diag_call Block: cov_fun {'attrspec': ['intent(hide)']} In: :linalg_utils:pymc/gp/linalg_utils.f:basis_diag_call vars2fortran: No typespec for argument "nbas". Block: basis_diag_call Block: gp_array_logp Block: asqs {'attrspec': ['intent(hide)']} In: :linalg_utils:pymc/blas_wrap.f:dcopy_wrap vars2fortran: No typespec for argument "nx". Block: dcopy_wrap Block: dtrmm_wrap Block: dtrsm_wrap Block: dpotrf_wrap Block: dchdc_wrap Block: dpotrs_wrap Post-processing (stage 2)... Building modules... Constructing call-back function "cb_cov_fun_in_diag_call__user__routines" def cov_fun(xe): return q Building module "linalg_utils"... Constructing wrapper function "remove_duplicates"... nr,rf,rt,nu,xu,ui = remove_duplicates(x) Constructing wrapper function "check_repeats"... f,new_indices,n_new_indices = check_repeats(x,x_sofar,f_sofar) Constructing wrapper function "diag_call"... v = diag_call(x,cov_fun,[cov_fun_extra_args]) Constructing wrapper function "basis_diag_call"... v = basis_diag_call(basis_x) Constructing wrapper function "gp_array_logp"... like = gp_array_logp(x,mu,sig,[overwrite_x,overwrite_mu]) Constructing wrapper function "asqs"... asqs(c,s,[cmin,cmax]) Constructing wrapper function "dcopy_wrap"... dcopy_wrap(x,y) Constructing wrapper function "dtrmm_wrap"... dtrmm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dtrsm_wrap"... dtrsm_wrap(a,b,side,transa,uplo,alpha) Constructing wrapper function "dpotrf_wrap"... info = dpotrf_wrap(a) Constructing wrapper function "dchdc_wrap"... piv,info = dchdc_wrap(a) Constructing wrapper function "dpotrs_wrap"... info = dpotrs_wrap(chol_fac,b,[uplo]) Wrote C/API module "linalg_utils" to file "build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c" adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp' to include_dirs. creating build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp building extension "pymc.gp.incomplete_chol" sources f2py options: [] f2py:> build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c Reading fortran codes... Reading file 'pymc/gp/incomplete_chol.f' (format:fix,strict) Post-processing... Block: incomplete_chol Block: ichol_continue Block: rowfun Block: ichol Block: rowfun {'attrspec': ['intent(hide)']} In: :incomplete_chol:pymc/gp/incomplete_chol.f:ichol_basis vars2fortran: No typespec for argument "n_nug". Block: ichol_basis Block: ichol_full Post-processing (stage 2)... Building modules... Constructing call-back function "cb_rowfun_in_ichol_continue__user__routines" def rowfun(itot,x,rowvec): return Constructing call-back function "cb_rowfun_in_ichol__user__routines" def rowfun(i,x,rowvec): return Building module "incomplete_chol"... Constructing wrapper function "ichol_continue"... m,piv = ichol_continue(sig,diag,piv,reltol,x,rowfun,mold,[overwrite_x,rowfun_extra_args]) Constructing wrapper function "ichol"... sig,m,piv = ichol(diag,reltol,x,rowfun,rl,[overwrite_x,rowfun_extra_args]) Constructing wrapper function "ichol_basis"... sig,p,m = ichol_basis(basis,nug,reltol) Constructing wrapper function "ichol_full"... sig,m,p = ichol_full(c,reltol) Wrote C/API module "incomplete_chol" to file "build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c" adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp' to include_dirs. building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources f2py options: [] f2py:> build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c creating build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs Reading fortran codes... Reading file 'pymc/gp/cov_funs/isotropic_cov_funs.f' (format:fix,strict) Reading file 'blas/BLAS/dscal.f' (format:fix,strict) Post-processing... Block: isotropic_cov_funs Block: imul Block: symmetrize Block: matern Block: nsmatrn Block: stein_spatiotemporal Block: nsst Block: gaussian Block: exponential Block: brownian Block: frac_brownian Block: pow_exp Block: sphere Block: quadratic Block: dgamma Block: rkbesl Block: dscal Post-processing (stage 2)... Building modules... Building module "isotropic_cov_funs"... Constructing wrapper function "imul"... imul(c,a,[cmin,cmax,symm]) Constructing wrapper function "symmetrize"... symmetrize(c,[cmin,cmax]) Constructing wrapper function "matern"... matern(c,diff_degree,[cmin,cmax,symm]) Constructing wrapper function "nsmatrn"... nsmatrn(c,ddx,ddy,hx,hy,nmax,[cmin,cmax,symm]) Constructing wrapper function "stein_spatiotemporal"... stein_spatiotemporal(c,gt,origin_val,[cmin,cmax,symm]) Constructing wrapper function "nsst"... nsst(c,gt,origin_val,hx,hy,[cmin,cmax,symm]) Constructing wrapper function "gaussian"... gaussian(c,[cmin,cmax,symm]) Constructing wrapper function "exponential"... exponential(c,[cmin,cmax,symm]) Constructing wrapper function "brownian"... brownian(c,x,y,[cmin,cmax,symm]) Constructing wrapper function "frac_brownian"... frac_brownian(c,x,y,h,[cmin,cmax,symm]) Constructing wrapper function "pow_exp"... pow_exp(c,pow,[cmin,cmax,symm]) Constructing wrapper function "sphere"... sphere(c,[cmin,cmax,symm]) Constructing wrapper function "quadratic"... quadratic(c,phi,[cmin,cmax,symm]) Creating wrapper for Fortran function "dgamma"("dgamma")... Constructing wrapper function "dgamma"... dgamma = dgamma(x) Constructing wrapper function "rkbesl"... bk = rkbesl(x,alpha,nb,ize,ncalc) Constructing wrapper function "dscal"... getarrdims:warning: assumed shape array, using 0 instead of '*' dscal(n,da,dx,incx) Wrote C/API module "isotropic_cov_funs" to file "build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c" Fortran 77 wrappers are saved to "build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f" adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs' to include_dirs. creating build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.c -> build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying /usr/local/lib/python2.7/site-packages/numpy/f2py/src/fortranobject.h -> build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs adding 'build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. building extension "pymc.gp.cov_funs.distances" sources f2py options: [] f2py:> build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c Reading fortran codes... Reading file 'pymc/gp/cov_funs/distances.f' (format:fix,strict) Post-processing... Block: distances Block: euclidean Block: geographic Block: paniso_geo_rad Block: aniso_geo_rad Post-processing (stage 2)... Building modules... Building module "distances"... Constructing wrapper function "euclidean"... euclidean(d,x,y,[cmin,cmax,symm]) Constructing wrapper function "geographic"... geographic(d,x,y,[cmin,cmax,symm]) Constructing wrapper function "paniso_geo_rad"... paniso_geo_rad(d,x,y,ctrs,scals,[cmin,cmax,symm]) Constructing wrapper function "aniso_geo_rad"... aniso_geo_rad(d,x,y,inc,ecc,[cmin,cmax,symm]) Wrote C/API module "distances" to file "build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c" adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs' to include_dirs. build_src: building npy-pkg config files running build_py creating build/lib.dragonfly-5.9-x86_64-2.7 creating build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/MCMC.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/ScipyDistributions.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/Matplot.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/InstantiationDecorators.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/CircularStochastic.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/distributions.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/CommonDeterministics.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/StepMethods.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/progressbar.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/PyMCObjects.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/six.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/Node.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/graph.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/NormalApproximation.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/datatypes.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/calc_utils.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/decorators.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/utils.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/threadpool.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/Model.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/diagnostics.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/NumpyDeterministics.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc copying pymc/Container.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc creating build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/hdf5ea.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/no_trace.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/sqlite.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/ram.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/pickle.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/base.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/txt.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database copying pymc/database/hdf5.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/database creating build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_missing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/weibull_fit_gof.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/gelman_bioassay.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/melanoma.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/weibull_fit.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/custom_step.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/zip.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/melanoma_data.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_linear.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_gof.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples copying pymc/examples/disaster_model_null.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples creating build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/basiscov.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/PyMCmodel.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/mesh_choice.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/cov.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/mean.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/covparams.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/MCMC.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/observation.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/realizations.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp copying pymc/examples/gp/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp creating build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_graph.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/objectmodel.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_instantiation.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_cov.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_basiscov.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_container.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_binary_step.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_mean.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_database.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_interactive.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_AM.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_GP_MCMC.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_norm_approx.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_MCMCSampler.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_convergence.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_missing.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_gradients.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_slice.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_utils.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_observation.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_realization.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_adaptive.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_special_methods.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests copying pymc/tests/test_distributions.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests creating build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/step_methods.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/Mean.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/Covariance.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/FullRankCovariance.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/NearlyFullRankCovariance.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/Realization.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/BasisCovariance.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/gpplots.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/gp_submodel.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp copying pymc/gp/GPutils.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp creating build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/nsmatern.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/wrapped_distances.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/cov_utils.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/bases.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs copying pymc/gp/cov_funs/brownian.py -> build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs running build_ext customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpf9Rie_/tmp creating /tmp/tmpf9Rie_/tmp/tmpf9Rie_ compile options: '-MMD -MF /tmp/tmpf9Rie_/file.c.d -c' cc: /tmp/tmpf9Rie_/file.c customize UnixCCompiler using build_ext resetting extension 'pymc.flib' language from 'c' to 'f77'. resetting extension 'pymc.gp.linalg_utils' language from 'c' to 'f77'. resetting extension 'pymc.gp.incomplete_chol' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.isotropic_cov_funs' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.distances' language from 'c' to 'f77'. get_default_fcompiler: matching types: '['gnu', 'gnu95']' customize GnuFCompiler Found executable /usr/local/bin/gfortran8 gnu: no Fortran 90 compiler found Could not locate executable cc -shared gnu: no Fortran 90 compiler found customize Gnu95FCompiler /usr/local/lib/python2.7/site-packages/numpy/distutils/fcompiler/__init__.py:530: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release). linker_so_flags = self.flag_vars.linker_so /usr/local/lib/python2.7/site-packages/numpy/distutils/fcompiler/__init__.py:540: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release). linker_exe_flags = self.flag_vars.linker_exe customize Gnu95FCompiler customize Gnu95FCompiler using build_ext building 'pymc.flib' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/cephes creating build/temp.dragonfly-5.9-x86_64-2.7/build creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7 creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7 creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-5.9-x86_64-2.7/pymc/flibmodule.c cc: cephes/c2f.c cc: cephes/chbevl.c cc: cephes/i0.ccc: build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/fortranobject.c cephes/i0.c: In function 'cephes_i0': cephes/i0.c:372:30: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( exp(x) * chbevl( y, A, 30 ) ); ^ In file included from cephes/mconf.h:171, from cephes/i0.c:77: cephes/protos.h:22:42: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double x, double *P, int n ); ~~~~~~~~^ cephes/i0.c:375:41: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( exp(x) * chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) ); ^ In file included from cephes/mconf.h:171, from cephes/i0.c:77: cephes/protos.h:22:42: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double x, double *P, int n ); ~~~~~~~~^ cephes/i0.c: In function 'cephes_i0e': cephes/i0.c:392:21: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( chbevl( y, A, 30 ) ); ^ In file included from cephes/mconf.h:171, from cephes/i0.c:77: cephes/protos.h:22:42: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double x, double *P, int n ); ~~~~~~~~^ cephes/i0.c:395:32: warning: passing argument 2 of 'chbevl' from incompatible pointer type [-Wincompatible-pointer-types] return( chbevl( 32.0/x - 2.0, B, 25 ) / sqrt(x) ); ^ In file included from cephes/mconf.h:171, from cephes/i0.c:77: cephes/protos.h:22:42: note: expected 'double *' but argument is of type 'short unsigned int *' extern double chbevl ( double x, double *P, int n ); ~~~~~~~~^ In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/pymc/flibmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran8 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.dragonfly-5.9-x86_64-2.7/pymc compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran8:f77: pymc/flib.f gfortran8:f77: pymc/histogram.f gfortran8:f77: pymc/flib_blas.f gfortran8:f77: pymc/blas_wrap.f gfortran8:f77: pymc/math.f f951: Warning: Nonconforming tab character in column 1 of line 509 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 510 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 511 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 512 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 513 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 557 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 558 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 559 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 560 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 561 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 707 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 711 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 715 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 723 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 775 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 779 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 783 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 791 [-Wtabs] f951: Warning: Nonconforming tab character in column 6 of line 849 [-Wtabs] f951: Warning: 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pymc/gibbsit.f f951: Warning: Nonconforming tab character in column 1 of line 1452 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 1454 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 1457 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1465 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1466 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1467 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1469 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1470 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1471 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1472 [-Wtabs] f951: Warning: Nonconforming tab character in column 5 of line 1473 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 1478 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of 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line 4633 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4634 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4635 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4637 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4638 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4639 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4640 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4642 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4643 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4644 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4645 [-Wtabs] f951: Warning: Nonconforming tab character in column 1 of line 4646 [-Wtabs] pymc/flib_blas.f:202:25: DOUBLE PRECISION PI 1 Warning: Unused variable 'pi' declared at (1) [-Wunused-variable] pymc/math.f:396:6: DOUBLE PRECISION FUNCTION DERF(X) 1 Warning: 'derf' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow] pymc/math.f:417:6: DOUBLE PRECISION FUNCTION DERFC(X) 1 Warning: 'derfc' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow] pymc/gibbsit.f:2160:5: 215 IF (R .GT. .5898437) GO TO 220 1 Warning: Label 215 at (1) defined but not used [-Wunused-label] pymc/gibbsit.f:2077:5: 115 IF (R .GT. .5898437) GO TO 120 1 Warning: Label 115 at (1) defined but not used [-Wunused-label] pymc/gibbsit.f:2064:5: 15 IF (KFLAG.GE.1) GO TO 30 1 Warning: Label 15 at (1) defined but not used [-Wunused-label] pymc/gibbsit.f:1204:16: cutpt = empquant(original,iteracnt,qhat,work) 1 Warning: Type mismatch in argument 'work' at (1); passed INTEGER(4) to REAL(8) [-Wargument-mismatch] pymc/flib.f:316:55: DOUBLE PRECISION mu_now, tau_now, alph_now, d_now, like 1 Warning: Unused variable 'd_now' declared at (1) [-Wunused-variable] pymc/flib.f:314:42: INTEGER i, nx, nalph, nmu, ntau, tnx 1 Warning: Unused variable 'tnx' declared at (1) [-Wunused-variable] pymc/flib.f:442:71: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'gradxlike' at (1) [-Wunused-dummy-argument] pymc/flib.f:461:40: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'high' declared at (1) [-Wunused-variable] pymc/flib.f:458:36: INTEGER n, nlower, nupper, i 1 Warning: Unused variable 'i' declared at (1) [-Wunused-variable] pymc/flib.f:461:29: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'like' declared at (1) [-Wunused-variable] pymc/flib.f:461:34: DOUBLE PRECISION like, low, high 1 Warning: Unused variable 'low' declared at (1) [-Wunused-variable] pymc/flib.f:442:39: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'lower' at (1) [-Wunused-dummy-argument] pymc/flib.f:442:45: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'upper' at (1) [-Wunused-dummy-argument] pymc/flib.f:442:33: subroutine uniform_grad_x(x,lower,upper,n,nlower,nupper,gradxlike) 1 Warning: Unused dummy argument 'x' at (1) [-Wunused-dummy-argument] pymc/flib.f:692:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:760:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:834:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:906:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:976:41: DOUBLE PRECISION aa, cc, sigma, pdf 1 Warning: Unused variable 'pdf' declared at (1) [-Wunused-variable] pymc/flib.f:1186:29: DOUBLE PRECISION factln 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:1185:51: DOUBLE PRECISION sumx, mut, infinity, sumfact 1 Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable] pymc/flib.f:1185:27: DOUBLE PRECISION sumx, mut, infinity, sumfact 1 Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable] pymc/flib.f:1300:55: DOUBLE PRECISION mu(nmu), gradlike(nmu),grad, cdf 1 Warning: Unused variable 'cdf' declared at (1) [-Wunused-variable] pymc/flib.f:1302:29: DOUBLE PRECISION factln, gammq 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:1302:36: DOUBLE PRECISION factln, gammq 1 Warning: Unused variable 'gammq' declared at (1) [-Wunused-variable] pymc/flib.f:1301:59: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumcdf' declared at (1) [-Wunused-variable] pymc/flib.f:1301:51: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumfact' declared at (1) [-Wunused-variable] pymc/flib.f:1301:27: DOUBLE PRECISION sumx, mut, infinity, sumfact, sumcdf 1 Warning: Unused variable 'sumx' declared at (1) [-Wunused-variable] pymc/flib.f:1402:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2154:40: DOUBLE PRECISION gradlike(n), grad 1 Warning: Unused variable 'grad' declared at (1) [-Wunused-variable] pymc/flib.f:2665:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2728:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2793:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2903:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:2959:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3021:29: DOUBLE PRECISION gammln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3396:58: DOUBLE PRECISION gradlike(nx), atmp, btmp, PI, glike 1 Warning: Unused variable 'glike' declared at (1) [-Wunused-variable] pymc/flib.f:3646:37: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:3646:29: DOUBLE PRECISION gammln, factln 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3706:37: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:3706:29: DOUBLE PRECISION gammln, factln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:3836:29: DOUBLE PRECISION factln 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:4039:26: DOUBLE PRECISION psi 1 Warning: Unused variable 'psi' declared at (1) [-Wunused-variable] pymc/flib.f:4266:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:4332:29: DOUBLE PRECISION gammln, psi 1 Warning: Unused variable 'gammln' declared at (1) [-Wunused-variable] pymc/flib.f:5184:35: DOUBLE PRECISION like, factln, infinity, sump 1 Warning: Unused variable 'factln' declared at (1) [-Wunused-variable] pymc/flib.f:5186:23: INTEGER i,j,n_tmp 1 Warning: Unused variable 'n_tmp' declared at (1) [-Wunused-variable] pymc/flib.f:5434:26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] pymc/flib.f:5488:25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) [-Wunused-variable] pymc/flib.f:5481:26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] pymc/flib.f:5535:25: DOUBLE PRECISION i0 1 Warning: Unused variable 'i0' declared at (1) [-Wunused-variable] pymc/flib.f:5528:26: DOUBLE PRECISION tmp 1 Warning: Unused variable 'tmp' declared at (1) [-Wunused-variable] pymc/flib.f:4882:0: K = I Warning: 'k' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/local/bin/gfortran8 -Wall -g -shared build/temp.dragonfly-5.9-x86_64-2.7/cephes/i0.o build/temp.dragonfly-5.9-x86_64-2.7/cephes/c2f.o build/temp.dragonfly-5.9-x86_64-2.7/cephes/chbevl.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/flibmodule.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/fortranobject.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/flib.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/histogram.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/flib_blas.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/blas_wrap.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/math.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/gibbsit.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/flib-f2pywrappers.o -L/usr/local/lib -L/usr/local/lib/gcc8/ -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib -lopenblas -lgfortran -lopenblas -lgfortran -lpython2.7 -lgfortran -o build/lib.dragonfly-5.9-x86_64-2.7/pymc/flib.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pymc.LazyFunction' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pymc/LazyFunction.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from pymc/LazyFunction.c:255: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pymc/LazyFunction.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pymc/LazyFunction.so building 'pymc.Container_values' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pymc/Container_values.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from pymc/Container_values.c:254: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/pymc/Container_values.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/pymc/Container_values.so building 'pymc.gp.linalg_utils' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c cc: build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran8 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.dragonfly-5.9-x86_64-2.7/pymc/gp compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran8:f77: pymc/blas_wrap.f gfortran8:f77: pymc/gp/linalg_utils.f pymc/gp/linalg_utils.f:151:56: SUBROUTINE gp_array_logp(x, mu, sig, n, like, info) 1 Warning: Unused dummy argument 'info' at (1) [-Wunused-dummy-argument] /usr/local/bin/gfortran8 -Wall -g -shared build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utilsmodule.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utils.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/blas_wrap.o -L/usr/local/lib -L/usr/local/lib/gcc8/ -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib -lopenblas -lgfortran -lopenblas -lgfortran -lpython2.7 -lgfortran -o build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utils.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pymc.gp.incomplete_chol' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran8 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran8:f77: pymc/gp/incomplete_chol.f /usr/local/bin/gfortran8 -Wall -g -shared build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_cholmodule.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_chol.o -L/usr/local/lib -L/usr/local/lib/gcc8/ -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib -lopenblas -lgfortran -lopenblas -lgfortran -lpython2.7 -lgfortran -o build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_chol.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pymc.gp.cov_funs.isotropic_cov_funs' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs creating build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c cc: build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.c:2: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran8 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops creating build/temp.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs creating build/temp.dragonfly-5.9-x86_64-2.7/blas creating build/temp.dragonfly-5.9-x86_64-2.7/blas/BLAS compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran8:f77: pymc/gp/cov_funs/isotropic_cov_funs.f gfortran8:f77: blas/BLAS/dscal.f gfortran8:f77: build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f pymc/gp/cov_funs/isotropic_cov_funs.f:940:6: DOUBLE PRECISION FUNCTION DGAMMA(X) 1 Warning: 'dgamma' declared at (1) is also the name of an intrinsic. It can only be called via an explicit interface or if declared EXTERNAL. [-Wintrinsic-shadow] pymc/gp/cov_funs/isotropic_cov_funs.f:124:11: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:209:14: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:236:19: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:257:14: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:265:16: h=hx(i)*hy(j) 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:286:19: fl = DINT(diff_degree) 1 Warning: Possible change of value in conversion from REAL(8) to INTEGER(4) at (1) [-Wconversion] pymc/gp/cov_funs/isotropic_cov_funs.f:1336:0: INTEGER I,IEND,ITEMP,IZE,J,K,M,MPLUS1,NB,NCALC Warning: 'itemp' may be used uninitialized in this function [-Wmaybe-uninitialized] /usr/local/bin/gfortran8 -Wall -g -shared build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funsmodule.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs.o build/temp.dragonfly-5.9-x86_64-2.7/blas/BLAS/dscal.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.o -L/usr/local/lib -L/usr/local/lib/gcc8/ -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib -lopenblas -lgfortran -lopenblas -lgfortran -lpython2.7 -lgfortran -o build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) building 'pymc.gp.cov_funs.distances' extension compiling C sources C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.h:13, from build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.c:16: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ compiling Fortran sources Fortran f77 compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -fPIC -O3 -funroll-loops Fortran f90 compiler: /usr/local/bin/gfortran8 -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops Fortran fix compiler: /usr/local/bin/gfortran8 -Wall -g -ffixed-form -fno-second-underscore -Wall -g -fno-second-underscore -fPIC -O3 -funroll-loops compile options: '-DHAVE_CBLAS -Ibuild/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' gfortran8:f77: pymc/gp/cov_funs/distances.f pymc/gp/cov_funs/distances.f:138:24: theta = DATAN2(dlat/a,dlon/a)/pi 1 Warning: Possible change of value in conversion from REAL(8) to REAL(4) at (1) [-Wconversion] /usr/local/bin/gfortran8 -Wall -g -shared build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distancesmodule.o build/temp.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.o build/temp.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distances.o -L/usr/local/lib -L/usr/local/lib/gcc8/ -L/usr/local/lib/gcc8/gcc/x86_64-portbld-dragonfly5.9/8.4.0 -L/usr/local/lib -lopenblas -lgfortran -lopenblas -lgfortran -lpython2.7 -lgfortran -o build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distances.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) SUCCEEDED 00:01:14 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-pymc-2.3.6_3,1 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-matplotlib>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-scipy>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-setuptools>0 - found ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-pymc-2.3.6_3,1 ===> py27-pymc-2.3.6_3,1 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-matplotlib>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-scipy>0 - found ===> py27-pymc-2.3.6_3,1 depends on package: py27-setuptools>0 - found ===> py27-pymc-2.3.6_3,1 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running config_cc unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src build_src building extension "pymc.flib" sources f2py options: ['skip:ppnd7'] adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc' to include_dirs. adding 'build/src.dragonfly-5.9-x86_64-2.7/pymc/flib-f2pywrappers.f' to sources. building extension "pymc.LazyFunction" sources building extension "pymc.Container_values" sources building extension "pymc.gp.linalg_utils" sources f2py options: [] adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp' to include_dirs. building extension "pymc.gp.incomplete_chol" sources f2py options: [] adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp' to include_dirs. building extension "pymc.gp.cov_funs.isotropic_cov_funs" sources f2py options: [] adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs' to include_dirs. adding 'build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs-f2pywrappers.f' to sources. building extension "pymc.gp.cov_funs.distances" sources f2py options: [] adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/fortranobject.c' to sources. adding 'build/src.dragonfly-5.9-x86_64-2.7/build/src.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs' to include_dirs. build_src: building npy-pkg config files running build_py running build_ext customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpQA_d6U/tmp creating /tmp/tmpQA_d6U/tmp/tmpQA_d6U compile options: '-MMD -MF /tmp/tmpQA_d6U/file.c.d -c' cc: /tmp/tmpQA_d6U/file.c customize UnixCCompiler using build_ext resetting extension 'pymc.flib' language from 'c' to 'f77'. resetting extension 'pymc.gp.linalg_utils' language from 'c' to 'f77'. resetting extension 'pymc.gp.incomplete_chol' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.isotropic_cov_funs' language from 'c' to 'f77'. resetting extension 'pymc.gp.cov_funs.distances' language from 'c' to 'f77'. get_default_fcompiler: matching types: '['gnu', 'gnu95']' customize GnuFCompiler Found executable /usr/local/bin/gfortran8 gnu: no Fortran 90 compiler found Could not locate executable cc -shared gnu: no Fortran 90 compiler found customize Gnu95FCompiler /usr/local/lib/python2.7/site-packages/numpy/distutils/fcompiler/__init__.py:530: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release). linker_so_flags = self.flag_vars.linker_so /usr/local/lib/python2.7/site-packages/numpy/distutils/fcompiler/__init__.py:540: UserWarning: LDFLAGS is used as is, not appended to flags already defined by numpy.distutils! Use NPY_DISTUTILS_APPEND_FLAGS=1 to obtain appending behavior instead (this behavior will become default in a future release). linker_exe_flags = self.flag_vars.linker_exe customize Gnu95FCompiler customize Gnu95FCompiler using build_ext running install_lib creating /construction/math/py-pymc/stage/usr/local/lib/python2.7 creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/flib.so -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/Container_values.so -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/LazyFunction.so -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/NormalApproximation.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/Container.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/CircularStochastic.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/linalg_utils.so -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/gp_submodel.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/Covariance.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/GPutils.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/Realization.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/Mean.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/__init__.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/gpplots.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/brownian.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/bases.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/__init__.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/nsmatern.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/cov_utils.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/wrapped_distances.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/isotropic_cov_funs.so -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/cov_funs/distances.so -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/BasisCovariance.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/NearlyFullRankCovariance.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/FullRankCovariance.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/step_methods.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/gp/incomplete_chol.so -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/calc_utils.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/six.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/distributions.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/diagnostics.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/__init__.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/Matplot.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/NumpyDeterministics.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/Model.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/ScipyDistributions.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/CommonDeterministics.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/graph.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/datatypes.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/Node.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/progressbar.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/__init__.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/base.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/hdf5ea.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/sqlite.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/ram.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/pickle.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/txt.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/no_trace.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/database/hdf5.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/decorators.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/MCMC.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_realization.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/__init__.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_AM.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_convergence.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_missing.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_norm_approx.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_gradients.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_MCMCSampler.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_slice.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_GP_MCMC.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_database.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_utils.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_container.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_interactive.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_mean.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_binary_step.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_observation.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_adaptive.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_graph.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_special_methods.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_cov.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_distributions.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_instantiation.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/objectmodel.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/tests/test_basiscov.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/PyMCObjects.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/InstantiationDecorators.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/StepMethods.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/utils.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/threadpool.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/zip.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gelman_bioassay.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/disaster_model_linear.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/melanoma.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/melanoma_data.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/custom_step.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/weibull_fit.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/weibull_fit_gof.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/disaster_model_null.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/disaster_model.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/disaster_model_gof.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/disaster_model_missing.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/__init__.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples creating /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/__init__.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/MCMC.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/cov.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/mesh_choice.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/PyMCmodel.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/covparams.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/basiscov.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/observation.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/mean.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp copying build/lib.dragonfly-5.9-x86_64-2.7/pymc/examples/gp/realizations.py -> /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/NormalApproximation.py to NormalApproximation.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Container.py to Container.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/CircularStochastic.py to CircularStochastic.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/gp_submodel.py to gp_submodel.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/Covariance.py to Covariance.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/GPutils.py to GPutils.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/Realization.py to Realization.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/Mean.py to Mean.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/__init__.py to __init__.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/gpplots.py to gpplots.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/brownian.py to brownian.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/bases.py to bases.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/__init__.py to __init__.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/nsmatern.py to nsmatern.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/cov_utils.py to cov_utils.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/wrapped_distances.py to wrapped_distances.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/BasisCovariance.py to BasisCovariance.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/NearlyFullRankCovariance.py to NearlyFullRankCovariance.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/FullRankCovariance.py to FullRankCovariance.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/step_methods.py to step_methods.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/calc_utils.py to calc_utils.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/six.py to six.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/distributions.py to distributions.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/diagnostics.py to diagnostics.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/__init__.py to __init__.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Matplot.py to Matplot.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/NumpyDeterministics.py to NumpyDeterministics.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Model.py to Model.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/ScipyDistributions.py to ScipyDistributions.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/CommonDeterministics.py to CommonDeterministics.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/graph.py to graph.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/datatypes.py to datatypes.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Node.py to Node.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/progressbar.py to progressbar.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/__init__.py to __init__.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/base.py to base.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/hdf5ea.py to hdf5ea.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/sqlite.py to sqlite.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/ram.py to ram.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/pickle.py to pickle.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/txt.py to txt.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/no_trace.py to no_trace.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/database/hdf5.py to hdf5.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/decorators.py to decorators.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/MCMC.py to MCMC.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_realization.py to test_realization.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/__init__.py to __init__.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_AM.py to test_AM.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_convergence.py to test_convergence.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_missing.py to test_missing.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_norm_approx.py to test_norm_approx.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_gradients.py to test_gradients.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_MCMCSampler.py to test_MCMCSampler.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_slice.py to test_slice.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_GP_MCMC.py to test_GP_MCMC.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_database.py to test_database.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_utils.py to test_utils.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_container.py to test_container.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_interactive.py to test_interactive.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_mean.py to test_mean.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_binary_step.py to test_binary_step.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_observation.py to test_observation.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_adaptive.py to test_adaptive.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_graph.py to test_graph.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_special_methods.py to test_special_methods.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_cov.py to test_cov.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_distributions.py to test_distributions.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_instantiation.py to test_instantiation.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/objectmodel.py to objectmodel.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/tests/test_basiscov.py to test_basiscov.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/PyMCObjects.py to PyMCObjects.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/InstantiationDecorators.py to InstantiationDecorators.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/StepMethods.py to StepMethods.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/utils.py to utils.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/threadpool.py to threadpool.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/zip.py to zip.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gelman_bioassay.py to gelman_bioassay.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/disaster_model_linear.py to disaster_model_linear.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/melanoma.py to melanoma.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/melanoma_data.py to melanoma_data.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/custom_step.py to custom_step.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/weibull_fit.py to weibull_fit.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/weibull_fit_gof.py to weibull_fit_gof.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/disaster_model_null.py to disaster_model_null.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/disaster_model.py to disaster_model.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/disaster_model_gof.py to disaster_model_gof.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/disaster_model_missing.py to disaster_model_missing.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/__init__.py to __init__.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/__init__.py to __init__.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/MCMC.py to MCMC.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/cov.py to cov.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/mesh_choice.py to mesh_choice.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/PyMCmodel.py to PyMCmodel.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/covparams.py to covparams.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/basiscov.py to basiscov.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/observation.py to observation.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/mean.py to mean.pyc byte-compiling /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/examples/gp/realizations.py to realizations.pyc writing byte-compilation script '/tmp/tmpCGXq_H.py' /usr/local/bin/python2.7 -O /tmp/tmpCGXq_H.py removing /tmp/tmpCGXq_H.py running install_egg_info running egg_info creating pymc.egg-info writing pymc.egg-info/PKG-INFO writing top-level names to pymc.egg-info/top_level.txt writing dependency_links to pymc.egg-info/dependency_links.txt writing manifest file 'pymc.egg-info/SOURCES.txt' reading manifest file 'pymc.egg-info/SOURCES.txt' writing manifest file 'pymc.egg-info/SOURCES.txt' Copying pymc.egg-info to /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc-2.3.6-py2.7.egg-info running install_scripts running install_clib customize UnixCCompiler C compiler: cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating /tmp/tmpyrHwzx/tmp creating /tmp/tmpyrHwzx/tmp/tmpyrHwzx compile options: '-MMD -MF /tmp/tmpyrHwzx/file.c.d -c' cc: /tmp/tmpyrHwzx/file.c writing list of installed files to '/construction/math/py-pymc/.PLIST.pymodtmp' /usr/bin/strip /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/flib.so /usr/bin/strip /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/distances.so /usr/bin/strip /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/cov_funs/isotropic_cov_funs.so /usr/bin/strip /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/incomplete_chol.so /usr/bin/strip /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/gp/linalg_utils.so /usr/bin/strip /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/Container_values.so /usr/bin/strip /construction/math/py-pymc/stage/usr/local/lib/python2.7/site-packages/pymc/LazyFunction.so ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/pymc/Container_values.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/pymc/flib.so is linked to /usr/local/lib/libopenblasp-r0.3.9.so from math/openblas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libopenblasp-r0.3.9.so:math/openblas Error: /usr/local/lib/python2.7/site-packages/pymc/flib.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/pymc/flib.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/pymc/flib.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:05 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-pymc-2.3.6_3,1 file sizes/checksums [305]: 0% file sizes/checksums [305]: 32% file sizes/checksums [305]: 65% file sizes/checksums [305]: 98% file sizes/checksums [305]: 100% packing files [305]: 0% packing files [305]: 32% packing files [305]: 65% packing files [305]: 98% packing files [305]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:04 TOTAL TIME 00:03:15