------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18.txz ===== Message from python27-2.7.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-numpy-1.16.5_5,1.txz ===== Message from py27-numpy-1.16.5_5,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/pciids-20200421.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/hwloc-1.11.11.txz Installing /packages/All/perl5-5.30.2.txz ===== Message from perl5-5.30.2: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/mpich-3.2.1_6.txz ===== Message from mpich-3.2.1_6: -- ===> NOTICE: The mpich port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/blas-3.5.0_6.txz Installing /packages/All/lapack-3.5.0_8.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9_1,1.txz Installing /packages/All/PETSc-3.10.2_4.txz ===== Message from PETSc-3.10.2_4: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:48 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building => SHA256 Checksum OK for petsc4py-3.10.0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-petsc4py-3.10.0_2 for building ===> Extracting for py27-petsc4py-3.10.0_2 => SHA256 Checksum OK for petsc4py-3.10.0.tar.gz. Extracted Memory Use: 18.27M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-petsc4py-3.10.0_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-petsc4py-3.10.0_2 depends on package: py27-setuptools>0 - found ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> py27-petsc4py-3.10.0_2 depends on shared library: libpetsc.so - found (/usr/local/lib/libpetsc.so) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-petsc4py-3.10.0_2 depends on package: py27-setuptools>0 - found ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/bin/python2.7 - found ===> py27-petsc4py-3.10.0_2 depends on shared library: libmpich.so - found (/usr/local/lib/libmpich.so) ===> py27-petsc4py-3.10.0_2 depends on shared library: libpetsc.so - found (/usr/local/lib/libpetsc.so) ===> Configuring for py27-petsc4py-3.10.0_2 running config ---------------------------------------------------------------------- PETSC_DIR: /usr/local ---------------------------------------------------------------------- PETSC_ARCH: * scalar-type: real * precision: double * language: CONLY * compiler: /usr/local/bin/mpicc * linker: /usr/local/bin/mpicc ---------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-petsc4py-3.10.0_2 running build running build_src running build_py creating build creating build/lib.dragonfly-5.9-x86_64-2.7 creating build/lib.dragonfly-5.9-x86_64-2.7/petsc4py copying src/__main__.py -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py copying src/PETSc.py -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py copying src/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py creating build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib copying src/lib/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib creating build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include creating build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/numpy.h -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.PETSc.h -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.PETSc_api.h -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.h -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/petsc4py.i -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/PETSc.pxd -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/__init__.pxd -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/include/petsc4py/__init__.pyx -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py copying src/PETSc.pxd -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py copying src/lib/petsc.cfg -> build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib running build_ext PETSC_DIR: /usr/local PETSC_ARCH: version: 3.10.2 release integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /usr/local/bin/mpicc linker: /usr/local/bin/mpicc building 'PETSc' extension creating build/temp.dragonfly-5.9-x86_64-2.7 creating build/temp.dragonfly-5.9-x86_64-2.7/src /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -fPIC -pipe -O2 -fno-strict-aliasing -DPETSC_DIR=/usr/local -I/usr/local/include -Isrc/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c src/PETSc.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/PETSc.o /usr/local/bin/mpicc -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -fPIC -pipe -O2 -fno-strict-aliasing -DPETSC_DIR=/usr/local -I/usr/local/include -Isrc/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c src/libpetsc4py.c -o build/temp.dragonfly-5.9-x86_64-2.7/src/libpetsc4py.o /usr/local/bin/mpicc /usr/local/lib/libmpi.so -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -pipe -O2 -fno-strict-aliasing -msse2 -fPIC -shared build/temp.dragonfly-5.9-x86_64-2.7/src/PETSc.o build/temp.dragonfly-5.9-x86_64-2.7/src/libpetsc4py.o -L/usr/local/lib -L/usr/local/lib -R/usr/local/lib -lpetsc -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib/PETSc.so /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) writing build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib/petsc.cfg SUCCEEDED 00:03:21 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-petsc4py-3.10.0_2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-petsc4py-3.10.0_2 depends on package: py27-setuptools>0 - found ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-petsc4py-3.10.0_2 ===> py27-petsc4py-3.10.0_2 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-petsc4py-3.10.0_2 depends on package: py27-setuptools>0 - found ===> py27-petsc4py-3.10.0_2 depends on file: /usr/local/bin/python2.7 - found ===> Generating temporary packing list running install running build running build_src running build_py running build_ext PETSC_DIR: /usr/local PETSC_ARCH: version: 3.10.2 release integer-size: 32-bit scalar-type: real precision: double language: CONLY compiler: /usr/local/bin/mpicc linker: /usr/local/bin/mpicc writing build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib/petsc.cfg running install_lib creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7 creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib/PETSc.so -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib/petsc.cfg -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/lib/__init__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/PETSc.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include creating /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.PETSc.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/numpy.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/__init__.pyx -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.i -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/PETSc.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/petsc4py.PETSc_api.h -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/include/petsc4py/__init__.pxd -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/include/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/PETSc.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/__init__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py copying build/lib.dragonfly-5.9-x86_64-2.7/petsc4py/__main__.py -> /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/lib/__init__.py to __init__.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/PETSc.py to PETSc.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/__init__.py to __init__.pyc byte-compiling /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py/__main__.py to __main__.pyc writing byte-compilation script '/tmp/tmpmDaAkK.py' /usr/local/bin/python2.7 -O /tmp/tmpmDaAkK.py removing /tmp/tmpmDaAkK.py running install_egg_info running egg_info writing requirements to petsc4py.egg-info/requires.txt writing petsc4py.egg-info/PKG-INFO writing top-level names to petsc4py.egg-info/top_level.txt writing dependency_links to petsc4py.egg-info/dependency_links.txt reading manifest file 'petsc4py.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'petsc4py.egg-info/SOURCES.txt' Copying petsc4py.egg-info to /construction/math/py-petsc4py/stage/usr/local/lib/python2.7/site-packages/petsc4py-3.10.0-py2.7.egg-info running install_scripts writing list of installed files to '/construction/math/py-petsc4py/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: 'lib/python2.7/site-packages/petsc4py/lib/PETSc.so' is not stripped consider trying INSTALL_TARGET=install-strip or using ${STRIP_CMD} Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libgfortran.so.5 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libgcc_s.so.1 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/gcc8/libquadmath.so.0 from lang/gcc8 but it is not declared as a dependency Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/liblapack.so.4 from math/lapack but it is not declared as a dependency Warning: you need LIB_DEPENDS+=liblapack.so:math/lapack Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libblas.so.2 from math/blas but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libblas.so:math/blas Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libX11.so.6 from x11/libX11 but it is not declared as a dependency Warning: you need USE_XORG+=x11 Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libxcb.so.1 from x11/libxcb but it is not declared as a dependency Warning: you need USE_XORG+=xcb Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libXau.so.6 from x11/libXau but it is not declared as a dependency Warning: you need USE_XORG+=xau Error: /usr/local/lib/python2.7/site-packages/petsc4py/lib/PETSc.so is linked to /usr/local/lib/libXdmcp.so.6 from x11/libXdmcp but it is not declared as a dependency Warning: you need USE_XORG+=xdmcp Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-petsc4py-3.10.0_2 file sizes/checksums [29]: 0% file sizes/checksums [29]: 100% packing files [29]: 0% packing files [29]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:04 TOTAL TIME 00:04:21