------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/libnghttp2-1.40.0.txz Installing /packages/All/ca_root_nss-3.52.txz ===== Message from ca_root_nss-3.52: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/curl-7.70.0.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/jsoncpp-1.9.2.txz Installing /packages/All/libuv-1.37.0.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/rhash-1.3.9.txz Installing /packages/All/liblz4-1.9.2_1,1.txz Installing /packages/All/lzo2-2.10_1.txz Installing /packages/All/libarchive-3.4.2,1.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/cmake-3.17.2.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:00:49 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> hmat-oss-1.6.1_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> hmat-oss-1.6.1_1 depends on file: /usr/local/sbin/pkg - found => jeromerobert-hmat-oss-1.6.1_GH0.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://codeload.github.com/jeromerobert/hmat-oss/tar.gz/1.6.1?dummy=/jeromerobert-hmat-oss-1.6.1_GH0.tar.gz fetch: https://codeload.github.com/jeromerobert/hmat-oss/tar.gz/1.6.1?dummy=/jeromerobert-hmat-oss-1.6.1_GH0.tar.gz: size unknown fetch: https://codeload.github.com/jeromerobert/hmat-oss/tar.gz/1.6.1?dummy=/jeromerobert-hmat-oss-1.6.1_GH0.tar.gz: size of remote file is not known jeromerobert-hmat-oss-1.6.1_GH0.tar.gz 0 B 0 Bps jeromerobert-hmat-oss-1.6.1_GH0.tar.gz 181 kB 598 kBps 00s ===> Fetching all distfiles required by hmat-oss-1.6.1_1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> hmat-oss-1.6.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by hmat-oss-1.6.1_1 for building => SHA256 Checksum OK for jeromerobert-hmat-oss-1.6.1_GH0.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> hmat-oss-1.6.1_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by hmat-oss-1.6.1_1 for building ===> Extracting for hmat-oss-1.6.1_1 => SHA256 Checksum OK for jeromerobert-hmat-oss-1.6.1_GH0.tar.gz. Extracted Memory Use: 0.97M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for hmat-oss-1.6.1_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> hmat-oss-1.6.1_1 depends on file: /usr/local/bin/cmake - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> hmat-oss-1.6.1_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> hmat-oss-1.6.1_1 depends on file: /usr/local/bin/cmake - found ===> hmat-oss-1.6.1_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so) ===> Configuring for hmat-oss-1.6.1_1 ===> Performing out-of-source build /bin/mkdir -p /construction/math/hmat-oss/.build -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/gcc -- Check for working C compiler: /usr/bin/gcc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/g++ -- Check for working CXX compiler: /usr/bin/g++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Could NOT find Git (missing: GIT_EXECUTABLE) -- Version string is -- Performing Test stdcpp98 -- Performing Test stdcpp98 - Success -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for sys/resource.h -- Looking for sys/resource.h - found -- Looking for unistd.h -- Looking for unistd.h - found -- Looking for mach/mach_time.h -- Looking for mach/mach_time.h - not found -- Performing Test _ffast_math -- Performing Test _ffast_math - Success -- Performing Test _funsafe_math_optimizations -- Performing Test _funsafe_math_optimizations - Success -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Performing Test MKL_PARALLEL_COMPILER_FLAG -- Performing Test MKL_PARALLEL_COMPILER_FLAG - Failed -- Could NOT find MKL (missing: MKL_INCLUDE_DIRS) -- Found BLAS: /usr/local/lib/libopenblas.so -- A library with LAPACK API found. -- Looking for openblas_set_num_threads -- Looking for openblas_set_num_threads - found -- Looking for goto_get_num_procs -- Looking for goto_get_num_procs - found -- Looking for cblas_dgemm -- Looking for cblas_dgemm - found -- Looking for cblas.h -- Looking for cblas.h - found -- Performing Test HAVE_GCC_WARNING_FLAGS -- Performing Test HAVE_GCC_WARNING_FLAGS - Success -- Performing Test DISABLE_CLANG_FALSE_POSITIVES -- Performing Test DISABLE_CLANG_FALSE_POSITIVES - Success -- The following OPTIONAL packages have been found: * OpenMP -- The following REQUIRED packages have been found: * BLAS * LAPACK -- The following OPTIONAL packages have not been found: * Git * MKL -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_CXX_FLAGS_DEBUG CMAKE_C_FLAGS_DEBUG CMAKE_C_FLAGS_RELEASE CMAKE_EXE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /construction/math/hmat-oss/.build SUCCEEDED 00:00:07 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for hmat-oss-1.6.1_1 /usr/local/bin/cmake -S/construction/math/hmat-oss/hmat-oss-1.6.1 -B/construction/math/hmat-oss/.build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/local/bin/cmake -E cmake_progress_start /construction/math/hmat-oss/.build/CMakeFiles /construction/math/hmat-oss/.build/CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all --- CMakeFiles/hmat-oss.dir/all --- /usr/bin/make -f CMakeFiles/hmat-oss.dir/build.make 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CMakeFiles/hmat-oss.dir/src/compression.cpp.o --- --- CMakeFiles/hmat-oss.dir/src/coordinates.cpp.o --- --- CMakeFiles/hmat-oss.dir/src/cluster_tree.cpp.o --- [ 7%] Building CXX object CMakeFiles/hmat-oss.dir/src/cluster_tree.cpp.o --- CMakeFiles/hmat-oss.dir/src/cluster_assembly_function.cpp.o --- [ 7%] Building CXX object CMakeFiles/hmat-oss.dir/src/cluster_assembly_function.cpp.o --- CMakeFiles/hmat-oss.dir/src/common/context.cpp.o --- [ 11%] Building CXX object CMakeFiles/hmat-oss.dir/src/common/context.cpp.o --- CMakeFiles/hmat-oss.dir/src/cluster_assembly_function.cpp.o --- /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/cluster_assembly_function.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/cluster_assembly_function.cpp --- CMakeFiles/hmat-oss.dir/src/cluster_tree.cpp.o --- /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/cluster_tree.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/cluster_tree.cpp --- CMakeFiles/hmat-oss.dir/src/common/context.cpp.o --- /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/common/context.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/common/context.cpp --- CMakeFiles/hmat-oss.dir/src/common/memory_instrumentation.cpp.o --- [ 23%] Building CXX object CMakeFiles/hmat-oss.dir/src/common/memory_instrumentation.cpp.o --- CMakeFiles/hmat-oss.dir/src/compression.cpp.o --- [ 19%] Building CXX object CMakeFiles/hmat-oss.dir/src/compression.cpp.o --- CMakeFiles/hmat-oss.dir/src/coordinates.cpp.o --- [ 15%] Building CXX object CMakeFiles/hmat-oss.dir/src/coordinates.cpp.o --- CMakeFiles/hmat-oss.dir/src/assembly.cpp.o --- [ 26%] Building CXX object CMakeFiles/hmat-oss.dir/src/assembly.cpp.o --- CMakeFiles/hmat-oss.dir/src/coordinates.cpp.o --- /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/coordinates.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/coordinates.cpp --- CMakeFiles/hmat-oss.dir/src/compression.cpp.o --- /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing 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-I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/assembly.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/assembly.cpp --- CMakeFiles/hmat-oss.dir/src/admissibility.cpp.o --- [ 30%] Building CXX object CMakeFiles/hmat-oss.dir/src/admissibility.cpp.o /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 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CMakeFiles/hmat-oss.dir/src/clustering.cpp.o /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/clustering.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/clustering.cpp --- CMakeFiles/hmat-oss.dir/src/data_types.cpp.o --- [ 42%] Building CXX object CMakeFiles/hmat-oss.dir/src/data_types.cpp.o /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/data_types.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/data_types.cpp --- CMakeFiles/hmat-oss.dir/src/default_engine.cpp.o --- [ 46%] Building CXX object CMakeFiles/hmat-oss.dir/src/default_engine.cpp.o /usr/bin/g++ -DHMAT_DLL_EXPORTS -Dhmat_oss_EXPORTS -I/construction/math/hmat-oss/hmat-oss-1.6.1/include -I/usr/local/include -I/construction/math/hmat-oss/.build -I/construction/math/hmat-oss/hmat-oss-1.6.1/src -Werror -Wall -Wno-unused-result -Wno-sign-compare -Wno-literal-suffix -fopenmp -std=c++98 -pipe -O2 -fno-strict-aliasing -Wno-undefined-var-template -pipe -O2 -fno-strict-aliasing -ffast-math -funsafe-math-optimizations -fPIC -o CMakeFiles/hmat-oss.dir/src/default_engine.cpp.o -c /construction/math/hmat-oss/hmat-oss-1.6.1/src/default_engine.cpp --- 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