------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/libnghttp2-1.40.0.txz Installing /packages/All/ca_root_nss-3.52.txz ===== Message from ca_root_nss-3.52: -- FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/curl-7.70.0.txz Installing /packages/All/pcre2-10.35.txz Installing /packages/All/icu-67.1,1.txz Installing /packages/All/png-1.6.37.txz Installing /packages/All/jbigkit-2.1_1.txz Installing /packages/All/jpeg-turbo-2.0.4.txz Installing /packages/All/tiff-4.1.0.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/freetype2-2.10.1.txz ===== Message from freetype2-2.10.1: -- The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. If LONG_PCF_NAMES port's option was enabled, the PCF family names may include the foundry and information whether they contain wide characters. For example, "Sony Fixed" or "Misc Fixed Wide", instead of "Fixed". This can be disabled at run time with using pcf:no-long-family-names property, if needed. Example: FREETYPE_PROPERTIES=pcf:no-long-family-names=1 How to recreate fontconfig cache with using such environment variable, if needed: # env FREETYPE_PROPERTIES=pcf:no-long-family-names=1 fc-cache -fsv The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/site/index.html, if documentation was installed). Installing /packages/All/expat-2.2.8.txz Installing /packages/All/fontconfig-2.13.92_2,1.txz Running fc-cache to build fontconfig cache... Font directories: /usr/local/share/fonts /usr/local/lib/X11/fonts /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded Installing /packages/All/pcre-8.43_2.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/libxml2-2.9.10.txz Installing /packages/All/libiconv-1.14_11.txz Installing /packages/All/python37-3.7.7.txz ===== Message from python37-3.7.7: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/glib-2.56.3_7,1.txz No schema files found: doing nothing. Installing /packages/All/wayland-1.16.0.txz Installing /packages/All/pciids-20200421.txz Installing /packages/All/libpciaccess-0.16.txz Installing /packages/All/libdrm-2.4.101.txz Installing /packages/All/libelf-0.8.13_3.txz Installing /packages/All/libXau-1.0.9.txz Installing /packages/All/libpthread-stubs-0.4.txz Installing /packages/All/xorgproto-2020.1.txz Installing /packages/All/libXdmcp-1.1.3.txz Installing /packages/All/libxcb-1.13.1.txz Installing /packages/All/libX11-1.6.9_1,1.txz Installing /packages/All/libXfixes-5.0.3_2.txz Installing /packages/All/libXdamage-1.1.5.txz Installing /packages/All/libXext-1.3.4,1.txz Installing /packages/All/libXrender-0.9.10_2.txz Installing /packages/All/libXrandr-1.5.2.txz Installing /packages/All/libxshmfence-1.3.txz Installing /packages/All/libXxf86vm-1.1.4_3.txz Installing /packages/All/mesa-libs-19.0.8.txz ===== Message from mesa-libs-19.0.8: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/pixman-0.40.0.txz Installing /packages/All/cairo-1.16.0,2.txz Installing /packages/All/graphite2-1.3.14.txz Installing /packages/All/harfbuzz-2.6.5.txz Installing /packages/All/fribidi-0.19.7.txz Installing /packages/All/libfontenc-1.1.4.txz Installing /packages/All/mkfontscale-1.2.1.txz Installing /packages/All/font-bh-ttf-1.0.3_4.txz Installing /packages/All/font-misc-meltho-1.0.3_4.txz Installing /packages/All/font-misc-ethiopic-1.0.3_4.txz Installing /packages/All/encodings-1.0.5,1.txz Installing /packages/All/dejavu-2.37_1.txz ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Installing /packages/All/xorg-fonts-truetype-7.7_1.txz Installing /packages/All/libXft-2.3.3.txz Installing /packages/All/pango-1.42.4_3.txz Installing /packages/All/tcl86-8.6.10.txz Installing /packages/All/libXScrnSaver-1.2.3_2.txz Installing /packages/All/tk86-8.6.10_1.txz Installing /packages/All/gmake-4.3.txz Installing /packages/All/libidn-1.35.txz Installing /packages/All/jbig2dec-0.18.txz Installing /packages/All/libpaper-1.1.24.4.txz Installing /packages/All/libdaemon-0.14_1.txz Installing /packages/All/libICE-1.0.10,1.txz Installing /packages/All/libSM-1.2.3,1.txz Installing /packages/All/dbus-1.12.16.txz ===> Creating groups. Creating group 'messagebus' with gid '556'. ===> Creating users Creating user 'messagebus' with uid '556'. Installing /packages/All/dbus-glib-0.110.txz Installing /packages/All/gdbm-1.18.1_1.txz Installing /packages/All/gobject-introspection-1.56.1,1.txz Installing /packages/All/gnome_subr-1.0.txz Installing /packages/All/avahi-app-0.7_3.txz ===> Creating groups. Creating group 'avahi' with gid '558'. ===> Creating users Creating user 'avahi' with uid '558'. Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/nettle-3.5.1_1.txz Installing /packages/All/libtasn1-4.16.0.txz Installing /packages/All/libunistring-0.9.10_1.txz Installing /packages/All/libidn2-2.3.0_1.txz Installing /packages/All/p11-kit-0.23.20.txz Installing /packages/All/tpm-emulator-0.7.4_2.txz ===> Creating groups. Creating group '_tss' with gid '601'. ===> Creating users Creating user '_tss' with uid '601'. Installing /packages/All/trousers-0.3.14_2.txz ===> Creating groups. Using existing group '_tss'. ===> Creating users Using existing user '_tss'. ===== Message from trousers-0.3.14_2: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Installing /packages/All/gnutls-3.6.13.txz Installing /packages/All/cups-2.2.13.txz ===> Creating groups. Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. Installing /packages/All/poppler-data-0.4.9_2.txz Installing /packages/All/ghostscript9-agpl-base-9.52_4.txz ===== Message from ghostscript9-agpl-base-9.52_4: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/libXt-1.2.0,1.txz Installing /packages/All/libXmu-1.1.3,1.txz Installing /packages/All/R-4.0.0_1.txz Installing /packages/All/R-cran-DBI-1.1.0_1.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/libevent-2.1.11.txz ===== Message from libevent-2.1.11: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/liblz4-1.9.2_1,1.txz Installing /packages/All/protobuf-3.11.4,1.txz Installing /packages/All/cyrus-sasl-2.1.27_1.txz *** Added group `cyrus' (id 60) *** Added user `cyrus' (id 60) ===== Message from cyrus-sasl-2.1.27_1: -- You can use sasldb2 for authentication, to add users use: saslpasswd2 -c username If you want to enable SMTP AUTH with the system Sendmail, read Sendmail.README NOTE: This port has been compiled with a default pwcheck_method of auxprop. If you want to authenticate your user by /etc/passwd, PAM or LDAP, install ports/security/cyrus-sasl2-saslauthd and set sasl_pwcheck_method to saslauthd after installing the Cyrus-IMAPd 2.X port. You should also check the /usr/local/lib/sasl2/*.conf files for the correct pwcheck_method. If you want to use GSSAPI mechanism, install ports/security/cyrus-sasl2-gssapi. If you want to use SRP mechanism, install ports/security/cyrus-sasl2-srp. If you want to use LDAP auxprop plugin, install ports/security/cyrus-sasl2-ldapdb. Installing /packages/All/libedit-3.1.20191231,1.txz Installing /packages/All/uchardet-0.0.7.txz Installing /packages/All/psutils-1.17_5.txz Installing /packages/All/perl5-5.30.2.txz ===== Message from perl5-5.30.2: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/groff-1.22.4_3.txz ===== Message from groff-1.22.4_3: -- In order to be able to use the html driver, you need to install the following packages: - ghostscript - netpbm Installing /packages/All/mysql57-client-5.7.30_1.txz ===== Message from mysql57-client-5.7.30_1: -- This is the mysql CLIENT without the server. for complete server and client, please install databases/mysql57-server UNFLAVORED devel/binutils -> use devel/binutils@native UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:29 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-RMySQL-0.10.20_1 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-RMySQL-0.10.20_1 for building => SHA256 Checksum OK for RMySQL_0.10.20.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-RMySQL-0.10.20_1 for building ===> Extracting for R-cran-RMySQL-0.10.20_1 ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by R-cran-RMySQL-0.10.20_1 for building => SHA256 Checksum OK for RMySQL_0.10.20.tar.gz. Extracted Memory Use: 0.33M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for R-cran-RMySQL-0.10.20_1 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on package: R-cran-DBI>=0.4 - found ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/bin/R - found ===> R-cran-RMySQL-0.10.20_1 depends on executable: gfortran8 - found ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/bin/as - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on shared library: libmysqlclient.so.20 - found (/usr/local/lib/mysql/libmysqlclient.so.20) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on package: R-cran-DBI>=0.4 - found ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/bin/R - found ===> R-cran-RMySQL-0.10.20_1 depends on executable: gfortran8 - found ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/bin/as - found ===> R-cran-RMySQL-0.10.20_1 depends on shared library: libmysqlclient.so.20 - found (/usr/local/lib/mysql/libmysqlclient.so.20) ===> Configuring for R-cran-RMySQL-0.10.20_1 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> R-cran-RMySQL-0.10.20_1 depends on package: R-cran-DBI>=0.4 - found ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/bin/R - found ===> R-cran-RMySQL-0.10.20_1 depends on executable: gfortran8 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for R-cran-RMySQL-0.10.20_1 ===> R-cran-RMySQL-0.10.20_1 depends on package: R-cran-DBI>=0.4 - found ===> R-cran-RMySQL-0.10.20_1 depends on file: /usr/local/bin/R - found ===> R-cran-RMySQL-0.10.20_1 depends on executable: gfortran8 - found ===> Generating temporary packing list * installing *source* package 'RMySQL' ... file 'configure' has the wrong MD5 checksum ** using staged installation Found mysql_config cflags and libs! ./configure: [[: not found Using PKG_CFLAGS=-I/usr/local/include/mysql Using PKG_LIBS=-L/usr/local/lib/mysql -lmysqlclient -pthread -lz -lm -lexecinfo ** libs gmake[2]: Entering directory '/construction/databases/R-cran-RMySQL/RMySQL/src' rm -f RMySQL.so RMySQL-init.o connection.o db-apply.o driver.o exception.o fields.o result.o utils.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c RMySQL-init.c -o RMySQL-init.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c connection.c -o connection.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c db-apply.c -o db-apply.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c driver.c -o driver.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c exception.c -o exception.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c fields.c -o fields.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c result.c -o result.o cc -I"/usr/local/lib/R/include" -DNDEBUG -I/usr/local/include/mysql -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -pipe -DLIBICONV_PLUG -O2 -isystem /usr/local/include -fno-strict-aliasing -c utils.c -o utils.o cc -shared -L/usr/local/lib/R/lib -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 -B/usr/local/bin -o RMySQL.so RMySQL-init.o connection.o db-apply.o driver.o exception.o fields.o result.o utils.o -L/usr/local/lib/mysql -lmysqlclient -pthread -lz -lm -lexecinfo -L/usr/local/lib/R/lib -lR /usr/local/bin/ld: /usr/lib/libc.so: .dynsym local symbol at index 8 (>= sh_info of 6) gmake[2]: Leaving directory '/construction/databases/R-cran-RMySQL/RMySQL/src' installing to /construction/databases/R-cran-RMySQL/stage/usr/local/lib/R/library/00LOCK-RMySQL/00new/RMySQL/libs ** R ** tests ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RMySQL) /usr/bin/find /construction/databases/R-cran-RMySQL/stage/usr/local/lib/R/library/RMySQL -name '*.so' -exec /usr/bin/strip {} + ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libreadline.so.8 from devel/readline but it is not declared as a dependency Warning: you need USES+=readline Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libpcre2-8.so.0 from devel/pcre2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libpcre2-8.so:devel/pcre2 Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libicuuc.so.67 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicuuc.so:devel/icu Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libicui18n.so.67 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicui18n.so:devel/icu Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libncurses.so.6 from devel/ncurses but it is not declared as a dependency Warning: you need USES+=ncurses Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libtinfo.so.6 from devel/ncurses but it is not declared as a dependency Warning: you need USES+=ncurses Error: /usr/local/lib/R/library/RMySQL/libs/RMySQL.so is linked to /usr/local/lib/libicudata.so.67 from devel/icu but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libicudata.so:devel/icu Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:14 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for R-cran-RMySQL-0.10.20_1 file sizes/checksums [26]: 0% file sizes/checksums [26]: 100% packing files [26]: 0% packing files [26]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:01:46