------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by treepuzzle-5.2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by treepuzzle-5.2 for building => SHA256 Checksum OK for tree-puzzle-5.2.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by treepuzzle-5.2 for building ===> Extracting for treepuzzle-5.2 => SHA256 Checksum OK for tree-puzzle-5.2.tar.gz. Extracted Memory Use: 2.86M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for treepuzzle-5.2 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> Configuring for treepuzzle-5.2 --------------------------------------------- If you want to install the parallel version of tree-puzzle, you need to install from the ports and have to have a MPI-Implementation on your system. The tree-puzzle configure script will then automatically build the normal and parallel version (puzzle & ppuzzle). --------------------------------------------- configure: loading site script /xports/Templates/config.site checking build system type... x86_64-portbld-dragonfly5.9 checking host system type... x86_64-portbld-dragonfly5.9 checking target system type... x86_64-portbld-dragonfly5.9 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... (cached) /usr/bin/awk checking whether make sets ${MAKE}... yes checking for gcc... cc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for style of include used by make... GNU checking dependency style of cc... gcc3 checking whether cc understands -c and -o together... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets ${MAKE}... (cached) yes checking for mpcc... no checking for hcc... no checking for mpicc... no checking for mpicc_lam... no checking for mpicc_mpich... no checking for cc... /usr/bin/cc checking whether /usr/bin/cc works as MPI compiler... no checking whether /usr/bin/cc needs -lmpi... no checking whether cc handles quotes correctly... yes checking for main in -lm... yes checking how to run the C preprocessor... cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for limits.h... (cached) yes checking for cc option to accept ANSI C... none needed checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/sprng/Makefile config.status: creating doc/Makefile config.status: creating data/Makefile config.status: creating tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for treepuzzle-5.2 --- all-recursive --- Making all in src --- all --- /usr/bin/make all-recursive --- all-recursive --- Making all in sprng --- makeseed.o --- --- store.o --- --- memory.o --- --- checkid.o --- --- lcg64.o --- --- primes-lcg64.o --- --- makeseed.o --- cc -pipe -O2 -fno-strict-aliasing -c makeseed.c --- store.o --- cc -pipe -O2 -fno-strict-aliasing -c store.c --- memory.o --- cc -pipe -O2 -fno-strict-aliasing -c memory.c --- checkid.o --- cc -pipe -O2 -fno-strict-aliasing -c checkid.c --- primes-lcg64.o --- cc -pipe -O2 -fno-strict-aliasing -c primes-lcg64.c --- lcg64.o --- cc -pipe -O2 -fno-strict-aliasing -c lcg64.c --- primes-lcg64.o --- primes-lcg64.c: In function 'getprime': primes-lcg64.c:75:5: warning: implicit declaration of function 'memcpy' [-Wimplicit-function-declaration] memcpy(prime_array,prime_list+offset,need*sizeof(unsigned int)); ^~~~~~ primes-lcg64.c:75:5: warning: incompatible implicit declaration of built-in function 'memcpy' primes-lcg64.c:75:5: note: include '' or provide a declaration of 'memcpy' primes-lcg64.c:5:1: +#include primes-lcg64.c:75:5: memcpy(prime_array,prime_list+offset,need*sizeof(unsigned int)); ^~~~~~ --- make-sprng-objs --- --- sml1.o --- --- sml2.o --- --- smlparam.o --- --- smodel1.o --- --- smodel2.o --- --- spuzzle1.o --- --- spuzzle2.o --- --- spstep.o --- --- sutil.o --- --- make-sprng-objs --- cd sprng && /usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o `makeseed.o' is up to date. `store.o' is up to date. `memory.o' is up to date. `checkid.o' is up to date. `lcg64.o' is up to date. `primes-lcg64.o' is up to date. --- sml1.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./ml1.c && mv ml1.o sml1.o --- sml2.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./ml2.c && mv ml2.o sml2.o --- smlparam.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./mlparam.c && mv mlparam.o smlparam.o --- smodel1.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./model1.c && mv model1.o smodel1.o --- smodel2.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./model2.c && mv model2.o smodel2.o --- spuzzle1.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./puzzle1.c && mv puzzle1.o spuzzle1.o --- spuzzle2.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./puzzle2.c && mv puzzle2.o spuzzle2.o --- spstep.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./pstep.c && mv pstep.o spstep.o --- sgamma.o --- --- sutil.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./util.c && mv util.o sutil.o --- sgamma.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./gamma.c && mv gamma.o sgamma.o --- sconsensus.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./consensus.c && mv consensus.o sconsensus.o --- streesort.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./treesort.c && mv treesort.o streesort.o --- streetest.o --- cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -pipe -O2 -fno-strict-aliasing -c ./treetest.c && mv treetest.o streetest.o --- puzzle --- cc -pipe -O2 -fno-strict-aliasing sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle Making all in doc --- all-recursive --- Making all in data Making all in tests SUCCEEDED 00:00:06 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for treepuzzle-5.2 ===> Generating temporary packing list Making install in src Making install in sprng cd sprng && /usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o `makeseed.o' is up to date. `store.o' is up to date. `memory.o' is up to date. `checkid.o' is up to date. `lcg64.o' is up to date. `primes-lcg64.o' is up to date. cc -pipe -O2 -fno-strict-aliasing sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle cd sprng && /usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o `makeseed.o' is up to date. `store.o' is up to date. `memory.o' is up to date. `checkid.o' is up to date. `lcg64.o' is up to date. `primes-lcg64.o' is up to date. cc -pipe -O2 -fno-strict-aliasing sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle /bin/sh ../mkinstalldirs /construction/biology/treepuzzle/stage/usr/local/bin install -s -m 555 puzzle /construction/biology/treepuzzle/stage/usr/local/bin/puzzle Making install in doc Making install in data Making install in tests ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for treepuzzle-5.2 file sizes/checksums [1]: 0% file sizes/checksums [1]: 100% packing files [1]: 0% packing files [1]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:13