------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.2.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/gettext-runtime-0.20.2.txz Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.9_2,1.txz Installing /packages/All/suitesparse-5.7.2_1.txz Installing /packages/All/expat-2.2.8.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/openssl-1.1.1g,1.txz Installing /packages/All/python27-2.7.18.txz ===== Message from python27-2.7.18: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Installing /packages/All/py27-setuptools-44.0.0.txz ===== Message from py27-setuptools-44.0.0: -- Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-numpy-1.16.5_5,1.txz ===== Message from py27-numpy-1.16.5_5,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-click-7.0.txz ===== Message from py27-click-7.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-future-0.18.2.txz ===== Message from py27-future-0.18.2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-scipy-1.2.2_1.txz ===== Message from py27-scipy-1.2.2_1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-six-1.14.0.txz ===== Message from py27-six-1.14.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-dateutil-2.8.0.txz ===== Message from py27-dateutil-2.8.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pytz-2020.1,1.txz ===== Message from py27-pytz-2020.1,1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/sqlite3-3.31.1_1,1.txz Installing /packages/All/py27-sqlite3-2.7.18_7.txz ===== Message from py27-sqlite3-2.7.18_7: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-bottleneck-1.3.2.txz ===== Message from py27-bottleneck-1.3.2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-numexpr-2.7.1.txz ===== Message from py27-numexpr-2.7.1: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/py27-pandas-0.24.2_1,1.txz ===== Message from py27-pandas-0.24.2_1,1: -- Install math/py-statsmodels to enable parts of pandas.stats. Install devel/py-xarray to enable the to_xarray() function. -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/hdf-szip-2.1.1.txz Installing /packages/All/hdf5-1.10.6,1.txz Installing /packages/All/py27-h5py-2.10.0.txz ===== Message from py27-h5py-2.10.0: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. Installing /packages/All/perl5-5.30.2.txz ===== Message from perl5-5.30.2: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Installing /packages/All/postgresql11-client-11.7.txz ===== Message from postgresql11-client-11.7: -- The PostgreSQL port has a collection of "side orders": postgresql-docs For all of the html documentation p5-Pg A perl5 API for client access to PostgreSQL databases. postgresql-tcltk If you want tcl/tk client support. postgresql-jdbc For Java JDBC support. postgresql-odbc For client access from unix applications using ODBC as access method. Not needed to access unix PostgreSQL servers from Win32 using ODBC. See below. ruby-postgres, py-psycopg2 For client access to PostgreSQL databases using the ruby & python languages. postgresql-plperl, postgresql-pltcl & postgresql-plruby For using perl5, tcl & ruby as procedural languages. postgresql-contrib Lots of contributed utilities, postgresql functions and datatypes. There you find pg_standby, pgcrypto and many other cool things. etc... Installing /packages/All/py27-pyqi-0.3.2_2.txz ===== Message from py27-pyqi-0.3.2_2: -- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses Python 2.7 which is EOLed upstream. It is scheduled to be removed on or after 2020-12-31. UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:21 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-biom-format-2.1.7_3 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-biom-format-2.1.7_3 for building => SHA256 Checksum OK for biom-format-2.1.7.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> NOTICE: This port is deprecated; you may wish to reconsider installing it: Uses deprecated version of python. It is scheduled to be removed on or after 2020-08-15. ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py27-biom-format-2.1.7_3 for building ===> Extracting for py27-biom-format-2.1.7_3 => SHA256 Checksum OK for biom-format-2.1.7.tar.gz. /bin/rm -f -r /construction/biology/py-biom-format/biom-format-2.1.7/tests Extracted Memory Use: 51.29M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py27-biom-format-2.1.7_3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py27-biom-format-2.1.7_3 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-setuptools>0 - found ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/bin/python2.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py27-biom-format-2.1.7_3 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-setuptools>0 - found ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/bin/python2.7 - found ===> Configuring for py27-biom-format-2.1.7_3 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py27-biom-format-2.1.7_3 running build running build_py creating build creating build/lib.dragonfly-5.9-x86_64-2.7 creating build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/util.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/exception.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/table.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/parse.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/err.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom creating build/lib.dragonfly-5.9-x86_64-2.7/biom/tests copying biom/tests/long_lines.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests copying biom/tests/test_table.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests copying biom/tests/test_parse.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests copying biom/tests/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests copying biom/tests/test_util.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests copying biom/tests/test_err.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests creating build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/table_summarizer.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/table_subsetter.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/table_ids.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/table_head.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/installation_informer.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/table_validator.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/metadata_adder.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/table_normalizer.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/table_converter.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/uc_processor.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli copying biom/cli/util.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/cli creating build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data copying biom/tests/test_data/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data creating build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_validate_table.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_table_converter.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_summarize_table.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_add_metadata.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_subset_table.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_uc_processor.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/__init__.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli copying biom/tests/test_cli/test_show_install_info.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli running egg_info writing requirements to biom_format.egg-info/requires.txt writing biom_format.egg-info/PKG-INFO writing top-level names to biom_format.egg-info/top_level.txt writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' copying biom/_filter.c -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/_filter.pyx -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/_subsample.c -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/_subsample.pyx -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/_transform.c -> build/lib.dragonfly-5.9-x86_64-2.7/biom copying biom/_transform.pyx -> build/lib.dragonfly-5.9-x86_64-2.7/biom creating build/lib.dragonfly-5.9-x86_64-2.7/biom/assets copying biom/assets/exercise_api.py -> build/lib.dragonfly-5.9-x86_64-2.7/biom/assets copying biom/assets/exercise_cli.sh -> build/lib.dragonfly-5.9-x86_64-2.7/biom/assets creating build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables copying biom/tests/test_data/bad_table.txt -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data copying biom/tests/test_data/bad_table.txt.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data copying biom/tests/test_data/empty.biom -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data copying biom/tests/test_data/no-contents.biom -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data copying biom/tests/test_data/test.biom -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data copying biom/tests/test_data/test.json -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data copying biom/tests/test_data/test.json.gz -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data creating build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.biom -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data copying biom/tests/test_cli/test_data/test.json -> build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data running build_ext building 'biom._filter' extension creating build/temp.dragonfly-5.9-x86_64-2.7 creating build/temp.dragonfly-5.9-x86_64-2.7/biom cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c biom/_filter.c -o build/temp.dragonfly-5.9-x86_64-2.7/biom/_filter.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_filter.c:435: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/biom/_filter.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/biom/_filter.so building 'biom._transform' extension cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c biom/_transform.c -o build/temp.dragonfly-5.9-x86_64-2.7/biom/_transform.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_transform.c:435: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/biom/_transform.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/biom/_transform.so building 'biom._subsample' extension cc -fno-strict-aliasing -pipe -I/usr/local/include -I/usr/local/include/ncurses -O2 -fno-strict-aliasing -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c biom/_subsample.c -o build/temp.dragonfly-5.9-x86_64-2.7/biom/_subsample.o In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from biom/_subsample.c:525: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.9-x86_64-2.7/biom/_subsample.o -L/usr/local/lib -lpython2.7 -o build/lib.dragonfly-5.9-x86_64-2.7/biom/_subsample.so SUCCEEDED 00:00:24 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py27-biom-format-2.1.7_3 depends on package: py27-click>0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-future>=0.16.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-scipy>=0.13.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-pandas>=0.20.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-h5py>=2.2.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-six>=1.10.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-setuptools>0 - found ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/bin/python2.7 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-pyqi>0 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py27-biom-format-2.1.7_3 ===> py27-biom-format-2.1.7_3 depends on package: py27-click>0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-numpy>=1.16,1<1.19,1 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-future>=0.16.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-scipy>=0.13.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-pandas>=0.20.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-h5py>=2.2.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-six>=1.10.0 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-setuptools>0 - found ===> py27-biom-format-2.1.7_3 depends on file: /usr/local/bin/python2.7 - found ===> py27-biom-format-2.1.7_3 depends on package: py27-pyqi>0 - found ===> Generating temporary packing list running install running build running build_py running egg_info writing requirements to biom_format.egg-info/requires.txt writing biom_format.egg-info/PKG-INFO writing top-level names to biom_format.egg-info/top_level.txt writing dependency_links to biom_format.egg-info/dependency_links.txt writing entry points to biom_format.egg-info/entry_points.txt reading manifest file 'biom_format.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'support_files' warning: no directories found matching 'tests/test_data' no previously-included directories found matching 'docs/_build' warning: no previously-included files matching '*.pyc' found anywhere in distribution warning: no previously-included files matching '*.pyo' found anywhere in distribution warning: no previously-included files matching '.git' found anywhere in distribution warning: no previously-included files matching '*.so' found anywhere in distribution warning: no previously-included files matching '.*.swp' found anywhere in distribution writing manifest file 'biom_format.egg-info/SOURCES.txt' running build_ext running install_lib creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7 creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/exception.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/table_subsetter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/installation_informer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/table_head.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/table_ids.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/table_converter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/uc_processor.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/table_normalizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/table_summarizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/table_validator.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/cli/metadata_adder.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/long_lines.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_parse.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/empty.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/no-contents.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/test.json -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/test.json.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/test.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/bad_table.txt -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_data/bad_table.txt.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_err.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_uc_processor.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_show_install_info.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_summarize_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_subset_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_table_converter.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_table_normalizer.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_add_metadata.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_validate_table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data/test.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data/test.json -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_data copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_data creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/bench_tables copying build/lib.dragonfly-5.9-x86_64-2.7/biom/table.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/__init__.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/util.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/parse.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/err.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_filter.c -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_filter.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_subsample.c -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_transform.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_subsample.pyx -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_transform.c -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom creating /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/assets copying build/lib.dragonfly-5.9-x86_64-2.7/biom/assets/exercise_cli.sh -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/assets copying build/lib.dragonfly-5.9-x86_64-2.7/biom/assets/exercise_api.py -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/assets copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_subsample.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_filter.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom copying build/lib.dragonfly-5.9-x86_64-2.7/biom/_transform.so -> /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/exception.py to exception.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/table_subsetter.py to table_subsetter.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/installation_informer.py to installation_informer.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/__init__.py to __init__.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/util.py to util.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/table_head.py to table_head.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/table_ids.py to table_ids.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/table_converter.py to table_converter.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/uc_processor.py to uc_processor.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/table_normalizer.py to table_normalizer.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/table_summarizer.py to table_summarizer.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/table_validator.py to table_validator.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/cli/metadata_adder.py to metadata_adder.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_table.py to test_table.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/long_lines.py to long_lines.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_parse.py to test_parse.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_data/__init__.py to __init__.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_util.py to test_util.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_err.py to test_err.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/__init__.py to __init__.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_uc_processor.py to test_uc_processor.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_show_install_info.py to test_show_install_info.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_summarize_table.py to test_summarize_table.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_subset_table.py to test_subset_table.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/__init__.py to __init__.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_table_converter.py to test_table_converter.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_table_normalizer.py to test_table_normalizer.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_add_metadata.py to test_add_metadata.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/tests/test_cli/test_validate_table.py to test_validate_table.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/table.py to table.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/__init__.py to __init__.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/util.py to util.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/parse.py to parse.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/err.py to err.pyc byte-compiling /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/assets/exercise_api.py to exercise_api.pyc writing byte-compilation script '/tmp/tmphOTXhT.py' /usr/local/bin/python2.7 -O /tmp/tmphOTXhT.py removing /tmp/tmphOTXhT.py running install_egg_info Copying biom_format.egg-info to /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom_format-2.1.7-py2.7.egg-info running install_scripts Installing biom script to /construction/biology/py-biom-format/stage/usr/local/bin writing list of installed files to '/construction/biology/py-biom-format/.PLIST.pymodtmp' /usr/bin/strip /construction/biology/py-biom-format/stage/usr/local/lib/python2.7/site-packages/biom/*.so ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/biom --> bin/biom-2.7 Link: @bin/biom --> bin/biom-2.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/biom/_filter.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py27-biom-format-2.1.7_3 file sizes/checksums [230]: 0% file sizes/checksums [230]: 43% file sizes/checksums [230]: 86% file sizes/checksums [230]: 100% packing files [230]: 0% packing files [230]: 43% packing files [230]: 86% packing files [230]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:48 TOTAL TIME 00:02:40