------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python27-2.7.16_1.tgz Message from python27-2.7.16_1: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Installing /packages/All/py27-setuptools-41.0.1.tgz Message from py27-setuptools-41.0.1: ******************************************************************* Only /usr/local/bin/easy_install-2.7 script has been installed since Python 2.7 is not the default Python version. ******************************************************************* Installing /packages/All/py27-numpy-1.16.4_1,1.tgz Installing /packages/All/hdf-szip-2.1.1.tgz Installing /packages/All/hdf5-1.10.5_2.tgz Installing /packages/All/libnghttp2-1.39.1_1.tgz Installing /packages/All/ca_root_nss-3.45.tgz Message from ca_root_nss-3.45: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Installing /packages/All/curl-7.65.3.tgz Installing /packages/All/pkgconf-1.6.1,1.tgz Installing /packages/All/netcdf-4.7.0.tgz SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x/!\ pycdf-0.6.3_10: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x/!\ pycdf-0.6.3_10: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_10 for building SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x/!\ pycdf-0.6.3_10: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_10 for building => SHA256 Checksum OK for pycdf-0.6-3b.tar.gz. SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x/!\ pycdf-0.6.3_10: Makefile warnings, please consider fixing /!\ Please set LICENSE for this port ===> NOTICE: The pycdf port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port ===> Fetching all distfiles required by pycdf-0.6.3_10 for building ===> Extracting for pycdf-0.6.3_10 => SHA256 Checksum OK for pycdf-0.6-3b.tar.gz. Extracted Memory Use: 1.10M SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for pycdf-0.6.3_10 ===> Applying ports patches for pycdf-0.6.3_10 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for pycdf-0.6.3_10 /usr/local/lib/python2.7/site-packages/setuptools/dist.py:481: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running config SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for pycdf-0.6.3_10 /usr/local/lib/python2.7/site-packages/setuptools/dist.py:481: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running build running build_py creating build creating build/lib.dragonfly-5.7-x86_64-2.7 creating build/lib.dragonfly-5.7-x86_64-2.7/pycdf copying pycdf/pycdfext.py -> build/lib.dragonfly-5.7-x86_64-2.7/pycdf copying pycdf/pycdfext_array.py -> build/lib.dragonfly-5.7-x86_64-2.7/pycdf copying pycdf/pycdf.py -> build/lib.dragonfly-5.7-x86_64-2.7/pycdf copying pycdf/__init__.py -> build/lib.dragonfly-5.7-x86_64-2.7/pycdf running build_ext building 'pycdf._pycdfext' extension Warning: Can't read registry to find the necessary compiler setting Make sure that Python modules _winreg, win32api or win32con are installed. C compiler: cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC creating build/temp.dragonfly-5.7-x86_64-2.7 creating build/temp.dragonfly-5.7-x86_64-2.7/pycdf creating build/temp.dragonfly-5.7-x86_64-2.7/pycdf/pycdfext creating build/temp.dragonfly-5.7-x86_64-2.7/pycdf/pycdfext/numpy compile options: '-I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c' cc: pycdf/pycdfext/numpy/pycdfext_wrap.c In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4, from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/oldnumeric.h:1, from pycdf/pycdfext/numpy/pycdfext_wrap.c:863: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -shared -L/usr/local/lib -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-2.7/pycdf/pycdfext/numpy/pycdfext_wrap.o -L/usr/local/lib -L/usr/local/lib -lnetcdf -lpython2.7 -o build/lib.dragonfly-5.7-x86_64-2.7/pycdf/_pycdfext.so SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for pycdf-0.6.3_10 ===> Generating temporary packing list /usr/local/lib/python2.7/site-packages/setuptools/dist.py:481: UserWarning: The version specified ('0.6-3b') is an invalid version, this may not work as expected with newer versions of setuptools, pip, and PyPI. Please see PEP 440 for more details. "details." % self.metadata.version running install running build running build_py copying pycdf/pycdfext.py -> build/lib.dragonfly-5.7-x86_64-2.7/pycdf copying pycdf/pycdfext_array.py -> build/lib.dragonfly-5.7-x86_64-2.7/pycdf running build_ext running install_lib creating /construction/science/pycdf/stage/usr/local/lib/python2.7 creating /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages creating /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.7-x86_64-2.7/pycdf/pycdf.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.7-x86_64-2.7/pycdf/pycdfext.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.7-x86_64-2.7/pycdf/pycdfext_array.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.7-x86_64-2.7/pycdf/__init__.py -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf copying build/lib.dragonfly-5.7-x86_64-2.7/pycdf/_pycdfext.so -> /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdf.py to pycdf.pyc byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdfext.py to pycdfext.pyc byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/pycdfext_array.py to pycdfext_array.pyc byte-compiling /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/__init__.py to __init__.pyc writing byte-compilation script '/tmp/tmpllgW05.py' /usr/local/bin/python2.7 -O /tmp/tmpllgW05.py removing /tmp/tmpllgW05.py running install_egg_info running egg_info creating pycdf.egg-info writing pycdf.egg-info/PKG-INFO writing top-level names to pycdf.egg-info/top_level.txt writing dependency_links to pycdf.egg-info/dependency_links.txt writing manifest file 'pycdf.egg-info/SOURCES.txt' reading manifest file 'pycdf.egg-info/SOURCES.txt' writing manifest file 'pycdf.egg-info/SOURCES.txt' Copying pycdf.egg-info to /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf-0.6_3b-py2.7.egg-info running install_scripts writing list of installed files to '/construction/science/pycdf/.PLIST.pymodtmp' /usr/bin/strip /construction/science/pycdf/stage/usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libhdf5_hl.so.100 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5_hl.so:science/hdf5 Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libhdf5.so.103 from science/hdf5 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libhdf5.so:science/hdf5 Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libcurl.so.4 from ftp/curl but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libcurl.so:ftp/curl Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libsz.so.2 from science/szip but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libsz.so:science/szip Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libnghttp2.so.14 from www/libnghttp2 but it is not declared as a dependency Warning: you need LIB_DEPENDS+=libnghttp2.so:www/libnghttp2 Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libssl.so.9 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Error: /usr/local/lib/python2.7/site-packages/pycdf/_pycdfext.so is linked to /usr/local/lib/libcrypto.so.9 from security/openssl but it is not declared as a dependency Warning: you need USES=ssl Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for pycdf-0.6.3_10 file sizes/checksums [17]: 0% file sizes/checksums [17]: 100% packing files [17]: 0% packing files [17]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:00:58