------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz SUCCEEDED 00:00:11 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-spglib-1.13.0_1 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-spglib-1.13.0_1 for building => SHA256 Checksum OK for spglib-1.13.0.post0.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-spglib-1.13.0_1 for building ===> Extracting for py36-spglib-1.13.0_1 => SHA256 Checksum OK for spglib-1.13.0.post0.tar.gz. Extracted Memory Use: 10.41M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-spglib-1.13.0_1 SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-spglib-1.13.0_1 setuptools is used. /usr/local/lib/python3.6/site-packages/setuptools/dist.py:472: UserWarning: Normalizing '1.13.0-0' to '1.13.0.post0' normalized_version, running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-spglib-1.13.0_1 setuptools is used. /usr/local/lib/python3.6/site-packages/setuptools/dist.py:472: UserWarning: Normalizing '1.13.0-0' to '1.13.0.post0' normalized_version, running build running build_py creating build creating build/lib.dragonfly-5.7-x86_64-3.6 creating build/lib.dragonfly-5.7-x86_64-3.6/spglib copying spglib/spglib.py -> build/lib.dragonfly-5.7-x86_64-3.6/spglib copying spglib/__init__.py -> build/lib.dragonfly-5.7-x86_64-3.6/spglib running build_ext building 'spglib._spglib' extension creating build/temp.dragonfly-5.7-x86_64-3.6 creating build/temp.dragonfly-5.7-x86_64-3.6/src cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c _spglib.c -o build/temp.dragonfly-5.7-x86_64-3.6/_spglib.o In file included from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4, from _spglib.c:38: /usr/local/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] #warning "Using deprecated NumPy API, disable it with " \ ^~~~~~~ cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/arithmetic.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/arithmetic.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/cell.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/cell.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/delaunay.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/delaunay.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/debug.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/debug.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/determination.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/determination.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/hall_symbol.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/hall_symbol.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/kgrid.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/kgrid.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/kpoint.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/kpoint.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/mathfunc.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/mathfunc.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/niggli.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/niggli.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/overlap.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/overlap.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/pointgroup.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/pointgroup.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/primitive.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/primitive.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/refinement.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/refinement.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/sitesym_database.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/sitesym_database.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/site_symmetry.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/site_symmetry.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/spacegroup.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/spacegroup.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/spin.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/spin.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/spg_database.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/spg_database.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/spglib.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/spglib.o cc -DNDEBUG -pipe -O2 -fno-strict-aliasing -fPIC -Isrc -I/usr/local/include/python3.6m -I/usr/local/lib/python3.6/site-packages/numpy/core/include -c src/symmetry.c -o build/temp.dragonfly-5.7-x86_64-3.6/src/symmetry.o cc -shared -pipe -O2 -fno-strict-aliasing build/temp.dragonfly-5.7-x86_64-3.6/_spglib.o build/temp.dragonfly-5.7-x86_64-3.6/src/arithmetic.o build/temp.dragonfly-5.7-x86_64-3.6/src/cell.o build/temp.dragonfly-5.7-x86_64-3.6/src/delaunay.o build/temp.dragonfly-5.7-x86_64-3.6/src/debug.o build/temp.dragonfly-5.7-x86_64-3.6/src/determination.o build/temp.dragonfly-5.7-x86_64-3.6/src/hall_symbol.o build/temp.dragonfly-5.7-x86_64-3.6/src/kgrid.o build/temp.dragonfly-5.7-x86_64-3.6/src/kpoint.o build/temp.dragonfly-5.7-x86_64-3.6/src/mathfunc.o build/temp.dragonfly-5.7-x86_64-3.6/src/niggli.o build/temp.dragonfly-5.7-x86_64-3.6/src/overlap.o build/temp.dragonfly-5.7-x86_64-3.6/src/pointgroup.o build/temp.dragonfly-5.7-x86_64-3.6/src/primitive.o build/temp.dragonfly-5.7-x86_64-3.6/src/refinement.o build/temp.dragonfly-5.7-x86_64-3.6/src/sitesym_database.o build/temp.dragonfly-5.7-x86_64-3.6/src/site_symmetry.o build/temp.dragonfly-5.7-x86_64-3.6/src/spacegroup.o build/temp.dragonfly-5.7-x86_64-3.6/src/spin.o build/temp.dragonfly-5.7-x86_64-3.6/src/spg_database.o build/temp.dragonfly-5.7-x86_64-3.6/src/spglib.o build/temp.dragonfly-5.7-x86_64-3.6/src/symmetry.o -L/usr/local/lib -lpython3.6m -o build/lib.dragonfly-5.7-x86_64-3.6/spglib/_spglib.so SUCCEEDED 00:00:10 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-spglib-1.13.0_1 ===> Generating temporary packing list setuptools is used. /usr/local/lib/python3.6/site-packages/setuptools/dist.py:472: UserWarning: Normalizing '1.13.0-0' to '1.13.0.post0' normalized_version, running install running build running build_py running build_ext running install_lib creating /construction/science/py-spglib/stage/usr/local/lib/python3.6 creating /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages/spglib copying build/lib.dragonfly-5.7-x86_64-3.6/spglib/__init__.py -> /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages/spglib copying build/lib.dragonfly-5.7-x86_64-3.6/spglib/spglib.py -> /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages/spglib copying build/lib.dragonfly-5.7-x86_64-3.6/spglib/_spglib.so -> /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages/spglib byte-compiling /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages/spglib/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages/spglib/spglib.py to spglib.cpython-36.pyc writing byte-compilation script '/tmp/tmp8p1ku0hx.py' /usr/local/bin/python3.6 /tmp/tmp8p1ku0hx.py removing /tmp/tmp8p1ku0hx.py running install_egg_info running egg_info writing spglib.egg-info/PKG-INFO writing dependency_links to spglib.egg-info/dependency_links.txt writing requirements to spglib.egg-info/requires.txt writing top-level names to spglib.egg-info/top_level.txt reading manifest file 'spglib.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files matching '*.pyc' found under directory 'test' writing manifest file 'spglib.egg-info/SOURCES.txt' Copying spglib.egg-info to /construction/science/py-spglib/stage/usr/local/lib/python3.6/site-packages/spglib-1.13.0.post0-py3.6.egg-info running install_scripts writing list of installed files to '/construction/science/py-spglib/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Error: /usr/local/lib/python3.6/site-packages/spglib/_spglib.so is linked to /usr/local/lib/libintl.so.8 from devel/gettext-runtime but it is not declared as a dependency Warning: you need USES+=gettext-runtime Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-spglib-1.13.0_1 file sizes/checksums [12]: 0% file sizes/checksums [12]: 100% packing files [12]: 0% packing files [12]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:01 TOTAL TIME 00:00:29