------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python37-3.7.6.txz ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/py37-numpy-1.16.5_4,1.txz Installing /packages/All/py37-scipy-1.2.2_1.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:19 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-scoria-1.0.4 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-scoria-1.0.4 depends on file: /usr/local/sbin/pkg - found => scoria-1.0.4.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/s/scoria/scoria-1.0.4.tar.gz scoria-1.0.4.tar.gz 0% of 8931 kB 0 Bps scoria-1.0.4.tar.gz 8931 kB 57 MBps 00s ===> Fetching all distfiles required by py37-scoria-1.0.4 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-scoria-1.0.4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scoria-1.0.4 for building => SHA256 Checksum OK for scoria-1.0.4.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-scoria-1.0.4 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-scoria-1.0.4 for building ===> Extracting for py37-scoria-1.0.4 => SHA256 Checksum OK for scoria-1.0.4.tar.gz. Extracted Memory Use: 42.02M SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-scoria-1.0.4 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-scoria-1.0.4 depends on package: py37-setuptools>0 - found ===> py37-scoria-1.0.4 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-scoria-1.0.4 depends on package: py37-setuptools>0 - found ===> py37-scoria-1.0.4 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-scoria-1.0.4 running config SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-scoria-1.0.4 running build running build_py creating build creating build/lib creating build/lib/scoria copying scoria/AtomsAndBonds.py -> build/lib/scoria copying scoria/__main__.py -> build/lib/scoria copying scoria/FileIO.py -> build/lib/scoria copying scoria/Geometry.py -> build/lib/scoria copying scoria/six.py -> build/lib/scoria copying scoria/Test.py -> build/lib/scoria copying scoria/Quaternion.py -> build/lib/scoria copying scoria/Selections.py -> build/lib/scoria copying scoria/UnitTests.py -> build/lib/scoria copying scoria/Manipulation.py -> build/lib/scoria copying scoria/OtherMolecules.py -> build/lib/scoria copying scoria/Information.py -> build/lib/scoria copying scoria/Molecule.py -> build/lib/scoria copying scoria/__init__.py -> build/lib/scoria creating build/lib/scoria/dumbpy copying scoria/dumbpy/DType.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/Support.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/Utils.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/Array.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/__init__.py -> build/lib/scoria/dumbpy creating build/lib/scoria/unittests copying scoria/unittests/OtherMoleculeTests.py -> build/lib/scoria/unittests copying scoria/unittests/GeometryTests.py -> build/lib/scoria/unittests copying scoria/unittests/__init__.py -> build/lib/scoria/unittests copying scoria/unittests/FileIOTests.py -> build/lib/scoria/unittests copying scoria/unittests/QuarternionTests.py -> build/lib/scoria/unittests copying scoria/unittests/UnitTests.py -> build/lib/scoria/unittests copying scoria/unittests/InformationTests.py -> build/lib/scoria/unittests copying scoria/unittests/SelectionTests.py -> build/lib/scoria/unittests copying scoria/unittests/ManipulationTests.py -> build/lib/scoria/unittests creating build/lib/scoria/sample-files copying scoria/sample-files/DNA_RNA_Protein.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/test_sim.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/3_mol_test.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/file_io_test.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/other_mol_test.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.psf -> build/lib/scoria/sample-files copying scoria/sample-files/M2_traj.psf -> build/lib/scoria/sample-files copying scoria/sample-files/M2_traj.dcd -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.dcd -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.100.dcd -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.pdbqt -> build/lib/scoria/sample-files SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-scoria-1.0.4 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-scoria-1.0.4 depends on package: py37-scipy>0 - found ===> py37-scoria-1.0.4 depends on package: py37-setuptools>0 - found ===> py37-scoria-1.0.4 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-scoria-1.0.4 ===> py37-scoria-1.0.4 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-scoria-1.0.4 depends on package: py37-scipy>0 - found ===> py37-scoria-1.0.4 depends on package: py37-setuptools>0 - found ===> py37-scoria-1.0.4 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/science/py-scoria/stage/usr/local/lib/python3.7 creating /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria creating /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/test_sim.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/DNA_RNA_Protein.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.pdbqt -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.100.dcd -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.dcd -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/M2_traj.dcd -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/M2_traj.psf -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.psf -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/other_mol_test.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/file_io_test.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/3_mol_test.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/sample-files creating /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/ManipulationTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/SelectionTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/InformationTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/UnitTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/QuarternionTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/FileIOTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/__init__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/GeometryTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests copying build/lib/scoria/unittests/OtherMoleculeTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests creating /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/__init__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/Array.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/Utils.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/Support.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/DType.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy copying build/lib/scoria/__init__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/Molecule.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/FileIO.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/__main__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/AtomsAndBonds.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/Information.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/OtherMolecules.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/Manipulation.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/UnitTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/Selections.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/Quaternion.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/Test.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/six.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria copying build/lib/scoria/Geometry.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/ManipulationTests.py to ManipulationTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/SelectionTests.py to SelectionTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/InformationTests.py to InformationTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/UnitTests.py to UnitTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/QuarternionTests.py to QuarternionTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/FileIOTests.py to FileIOTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/GeometryTests.py to GeometryTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/unittests/OtherMoleculeTests.py to OtherMoleculeTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy/Array.py to Array.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy/Utils.py to Utils.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy/Support.py to Support.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/dumbpy/DType.py to DType.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/__init__.py to __init__.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/Molecule.py to Molecule.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/FileIO.py to FileIO.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/__main__.py to __main__.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/AtomsAndBonds.py to AtomsAndBonds.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/Information.py to Information.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/OtherMolecules.py to OtherMolecules.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/Manipulation.py to Manipulation.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/UnitTests.py to UnitTests.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/Selections.py to Selections.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/Quaternion.py to Quaternion.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/Test.py to Test.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/six.py to six.cpython-37.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria/Geometry.py to Geometry.cpython-37.pyc writing byte-compilation script '/tmp/tmpupxlly1x.py' /usr/local/bin/python3.7 /tmp/tmpupxlly1x.py removing /tmp/tmpupxlly1x.py running install_egg_info running egg_info writing scoria.egg-info/PKG-INFO writing dependency_links to scoria.egg-info/dependency_links.txt writing requirements to scoria.egg-info/requires.txt writing top-level names to scoria.egg-info/top_level.txt reading manifest file 'scoria.egg-info/SOURCES.txt' writing manifest file 'scoria.egg-info/SOURCES.txt' Copying scoria.egg-info to /construction/science/py-scoria/stage/usr/local/lib/python3.7/site-packages/scoria-1.0.4-py3.7.egg-info running install_scripts writing list of installed files to '/construction/science/py-scoria/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-scoria-1.0.4 file sizes/checksums [101]: 0% file sizes/checksums [101]: 99% file sizes/checksums [101]: 100% packing files [101]: 0% packing files [101]: 99% packing files [101]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:02:23 TOTAL TIME 00:03:55