------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.6_1.tgz Installing /packages/All/indexinfo-0.3.1.tgz Installing /packages/All/libffi-3.2.1_3.tgz Installing /packages/All/ncurses-6.1.20190525.tgz Installing /packages/All/readline-8.0.0.tgz Installing /packages/All/gettext-runtime-0.20.1.tgz Installing /packages/All/openssl-1.0.2s,1.tgz Message from openssl-1.0.2s,1: Edit /usr/local/openssl/openssl.cnf to fit your needs. Installing /packages/All/python36-3.6.9.tgz Message from python36-3.6.9: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py36-gdbm databases/py-gdbm@py36 py36-sqlite3 databases/py-sqlite3@py36 py36-tkinter x11-toolkits/py-tkinter@py36 =========================================================================== Installing /packages/All/py36-setuptools-41.0.1.tgz Installing /packages/All/metis-5.1.0_8.tgz Message from metis-5.1.0_8: ===> NOTICE: The metis port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Installing /packages/All/gmp-6.1.2_1.tgz Installing /packages/All/mpfr-4.0.2.tgz Installing /packages/All/mpc-1.1.0_2.tgz Installing /packages/All/binutils-2.32_1,1.tgz Installing /packages/All/gcc8-8.3.0_3.tgz Message from gcc8-8.3.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/blas-3.5.0_6.tgz Installing /packages/All/lapack-3.5.0_8.tgz Installing /packages/All/openblas-0.2.20_10,1.tgz Installing /packages/All/suitesparse-5.2.0_4.tgz Installing /packages/All/py36-numpy-1.16.4_1,1.tgz Installing /packages/All/py36-scipy-1.2.2_1.tgz SUCCEEDED 00:00:24 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scoria-1.0.3_3 for building SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scoria-1.0.3_3 for building => SHA256 Checksum OK for scoria-1.0.3.tar.gz. SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- x===> Fetching all distfiles required by py36-scoria-1.0.3_3 for building ===> Extracting for py36-scoria-1.0.3_3 => SHA256 Checksum OK for scoria-1.0.3.tar.gz. Extracted Memory Use: 42.01M SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- x===> Patching for py36-scoria-1.0.3_3 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- x===> Configuring for py36-scoria-1.0.3_3 running config SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- x===> Building for py36-scoria-1.0.3_3 running build running build_py creating build creating build/lib creating build/lib/scoria copying scoria/Selections.py -> build/lib/scoria copying scoria/AtomsAndBonds.py -> build/lib/scoria copying scoria/Test.py -> build/lib/scoria copying scoria/UnitTests.py -> build/lib/scoria copying scoria/Information.py -> build/lib/scoria copying scoria/Molecule.py -> build/lib/scoria copying scoria/FileIO.py -> build/lib/scoria copying scoria/Manipulation.py -> build/lib/scoria copying scoria/Geometry.py -> build/lib/scoria copying scoria/__main__.py -> build/lib/scoria copying scoria/OtherMolecules.py -> build/lib/scoria copying scoria/__init__.py -> build/lib/scoria copying scoria/Quaternion.py -> build/lib/scoria copying scoria/six.py -> build/lib/scoria creating build/lib/scoria/unittests copying scoria/unittests/UnitTests.py -> build/lib/scoria/unittests copying scoria/unittests/SelectionTests.py -> build/lib/scoria/unittests copying scoria/unittests/FileIOTests.py -> build/lib/scoria/unittests copying scoria/unittests/OtherMoleculeTests.py -> build/lib/scoria/unittests copying scoria/unittests/QuarternionTests.py -> build/lib/scoria/unittests copying scoria/unittests/__init__.py -> build/lib/scoria/unittests copying scoria/unittests/InformationTests.py -> build/lib/scoria/unittests copying scoria/unittests/ManipulationTests.py -> build/lib/scoria/unittests copying scoria/unittests/GeometryTests.py -> build/lib/scoria/unittests creating build/lib/scoria/dumbpy copying scoria/dumbpy/Support.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/Utils.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/__init__.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/Array.py -> build/lib/scoria/dumbpy copying scoria/dumbpy/DType.py -> build/lib/scoria/dumbpy creating build/lib/scoria/sample-files copying scoria/sample-files/test_sim.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/file_io_test.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/DNA_RNA_Protein.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/other_mol_test.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/3_mol_test.pdb -> build/lib/scoria/sample-files copying scoria/sample-files/M2_traj.psf -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.psf -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.dcd -> build/lib/scoria/sample-files copying scoria/sample-files/M2_traj.dcd -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.100.dcd -> build/lib/scoria/sample-files copying scoria/sample-files/single_frame.pdbqt -> build/lib/scoria/sample-files SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- x SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- x===> Staging for py36-scoria-1.0.3_3 ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/science/py-scoria/stage/usr/local/lib/python3.6 creating /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages creating /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/Quaternion.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/Molecule.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/Selections.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/AtomsAndBonds.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/Information.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/OtherMolecules.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/six.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria creating /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/M2_traj.dcd -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.pdbqt -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/DNA_RNA_Protein.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.dcd -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/test_sim.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/3_mol_test.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.psf -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.100.dcd -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/M2_traj.psf -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/single_frame.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/file_io_test.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/sample-files/other_mol_test.pdb -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/sample-files copying build/lib/scoria/Geometry.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria creating /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/OtherMoleculeTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/ManipulationTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/SelectionTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/UnitTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/GeometryTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/__init__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/InformationTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/FileIOTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/unittests/QuarternionTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests copying build/lib/scoria/FileIO.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/__init__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/UnitTests.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/Manipulation.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria copying build/lib/scoria/__main__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria creating /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/DType.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/Support.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/__init__.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/Utils.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy copying build/lib/scoria/dumbpy/Array.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy copying build/lib/scoria/Test.py -> /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/Quaternion.py to Quaternion.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/Molecule.py to Molecule.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/Selections.py to Selections.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/AtomsAndBonds.py to AtomsAndBonds.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/Information.py to Information.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/OtherMolecules.py to OtherMolecules.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/six.py to six.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/Geometry.py to Geometry.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/OtherMoleculeTests.py to OtherMoleculeTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/ManipulationTests.py to ManipulationTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/SelectionTests.py to SelectionTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/UnitTests.py to UnitTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/GeometryTests.py to GeometryTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/InformationTests.py to InformationTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/FileIOTests.py to FileIOTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/unittests/QuarternionTests.py to QuarternionTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/FileIO.py to FileIO.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/UnitTests.py to UnitTests.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/Manipulation.py to Manipulation.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/__main__.py to __main__.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy/DType.py to DType.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy/Support.py to Support.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy/__init__.py to __init__.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy/Utils.py to Utils.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/dumbpy/Array.py to Array.cpython-36.pyc byte-compiling /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria/Test.py to Test.cpython-36.pyc writing byte-compilation script '/tmp/tmpp7mmdpav.py' /usr/local/bin/python3.6 /tmp/tmpp7mmdpav.py removing /tmp/tmpp7mmdpav.py running install_egg_info running egg_info writing scoria.egg-info/PKG-INFO writing dependency_links to scoria.egg-info/dependency_links.txt writing requirements to scoria.egg-info/requires.txt writing top-level names to scoria.egg-info/top_level.txt reading manifest file 'scoria.egg-info/SOURCES.txt' writing manifest file 'scoria.egg-info/SOURCES.txt' Copying scoria.egg-info to /construction/science/py-scoria/stage/usr/local/lib/python3.6/site-packages/scoria-1.0.3-py3.6.egg-info running install_scripts writing list of installed files to '/construction/science/py-scoria/.PLIST.pymodtmp' ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: check-plist ------------------------------------------------------------------------------- x====> Checking for pkg-plist issues (check-plist) ===> Parsing plist ===> Checking for items in STAGEDIR missing from pkg-plist ===> Checking for items in pkg-plist which are not in STAGEDIR ===> No pkg-plist issues found (check-plist) SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- x===> Building package for py36-scoria-1.0.3_3 file sizes/checksums [101]: 0% file sizes/checksums [101]: 99% file sizes/checksums [101]: 100% packing files [101]: 0% packing files [101]: 99% packing files [101]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:08 TOTAL TIME 00:00:47