------------------------------------------------------------------------------- -- Phase: setup ------------------------------------------------------------------------------- Installing /packages/All/expat-2.2.8.txz Installing /packages/All/indexinfo-0.3.1.txz Installing /packages/All/libffi-3.2.1_3.txz Installing /packages/All/ncurses-6.1.20190525.txz Installing /packages/All/readline-8.0.4.txz Installing /packages/All/gettext-runtime-0.20.1.txz Installing /packages/All/openssl-1.1.1d,1.txz Installing /packages/All/python37-3.7.6.txz ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 Installing /packages/All/py37-setuptools-44.0.0.txz Installing /packages/All/metis-5.1.0_8.txz Installing /packages/All/tbb-2020.1.txz Installing /packages/All/gmp-6.2.0.txz Installing /packages/All/mpfr-4.0.2.txz Installing /packages/All/mpc-1.1.0_2.txz UNFLAVORED devel/binutils -> use devel/binutils@native Installing /packages/All/binutils-2.33.1_2,1.txz Installing /packages/All/gcc8-8.4.0.txz ===== Message from gcc8-8.4.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc8 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Installing /packages/All/openblas-0.3.7_2,1.txz Installing /packages/All/suitesparse-5.4.0_5.txz Installing /packages/All/py37-numpy-1.16.5_4,1.txz Installing /packages/All/py37-scipy-1.2.2_1.txz UNFLAVORED devel/binutils -> use devel/binutils@native SUCCEEDED 00:01:01 ------------------------------------------------------------------------------- -- Phase: check-sanity ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: pkg-depends ------------------------------------------------------------------------------- ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/sbin/pkg - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: fetch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: fetch ------------------------------------------------------------------------------- ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/sbin/pkg - found => rmsd-1.3.2.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch https://files.pythonhosted.org/packages/source/r/rmsd/rmsd-1.3.2.tar.gz rmsd-1.3.2.tar.gz 0% of 11 kB 0 Bps rmsd-1.3.2.tar.gz 11 kB 31 MBps 00s ===> Fetching all distfiles required by py37-rmsd-1.3.2_2 for building SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: checksum ------------------------------------------------------------------------------- ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-rmsd-1.3.2_2 for building => SHA256 Checksum OK for rmsd-1.3.2.tar.gz. SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: extract-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: extract ------------------------------------------------------------------------------- ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/sbin/pkg - found ===> Fetching all distfiles required by py37-rmsd-1.3.2_2 for building ===> Extracting for py37-rmsd-1.3.2_2 => SHA256 Checksum OK for rmsd-1.3.2.tar.gz. Extracted Memory Use: 0.08M SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: patch ------------------------------------------------------------------------------- ===> Patching for py37-rmsd-1.3.2_2 SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: build-depends ------------------------------------------------------------------------------- ===> py37-rmsd-1.3.2_2 depends on package: py37-setuptools>0 - found ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:01 ------------------------------------------------------------------------------- -- Phase: lib-depends ------------------------------------------------------------------------------- SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: configure ------------------------------------------------------------------------------- ===> py37-rmsd-1.3.2_2 depends on package: py37-setuptools>0 - found ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/bin/python3.7 - found ===> Configuring for py37-rmsd-1.3.2_2 running config SUCCEEDED 00:00:03 ------------------------------------------------------------------------------- -- Phase: build ------------------------------------------------------------------------------- ===> Building for py37-rmsd-1.3.2_2 running build running build_py creating build creating build/lib creating build/lib/rmsd copying rmsd/calculate_rmsd.py -> build/lib/rmsd copying rmsd/__init__.py -> build/lib/rmsd SUCCEEDED 00:00:02 ------------------------------------------------------------------------------- -- Phase: run-depends ------------------------------------------------------------------------------- ===> py37-rmsd-1.3.2_2 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-rmsd-1.3.2_2 depends on package: py37-scipy>0 - found ===> py37-rmsd-1.3.2_2 depends on package: py37-setuptools>0 - found ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/bin/python3.7 - found SUCCEEDED 00:00:00 ------------------------------------------------------------------------------- -- Phase: stage ------------------------------------------------------------------------------- ===> Staging for py37-rmsd-1.3.2_2 ===> py37-rmsd-1.3.2_2 depends on package: py37-numpy>=1.15,1<1.19,1 - found ===> py37-rmsd-1.3.2_2 depends on package: py37-scipy>0 - found ===> py37-rmsd-1.3.2_2 depends on package: py37-setuptools>0 - found ===> py37-rmsd-1.3.2_2 depends on file: /usr/local/bin/python3.7 - found ===> Generating temporary packing list running install running build running build_py running install_lib creating /construction/science/py-rmsd/stage/usr/local/lib/python3.7 creating /construction/science/py-rmsd/stage/usr/local/lib/python3.7/site-packages creating /construction/science/py-rmsd/stage/usr/local/lib/python3.7/site-packages/rmsd copying build/lib/rmsd/calculate_rmsd.py -> /construction/science/py-rmsd/stage/usr/local/lib/python3.7/site-packages/rmsd copying build/lib/rmsd/__init__.py -> /construction/science/py-rmsd/stage/usr/local/lib/python3.7/site-packages/rmsd byte-compiling /construction/science/py-rmsd/stage/usr/local/lib/python3.7/site-packages/rmsd/calculate_rmsd.py to calculate_rmsd.cpython-37.pyc byte-compiling /construction/science/py-rmsd/stage/usr/local/lib/python3.7/site-packages/rmsd/__init__.py to __init__.cpython-37.pyc writing byte-compilation script '/tmp/tmp0vhc2818.py' /usr/local/bin/python3.7 /tmp/tmp0vhc2818.py removing /tmp/tmp0vhc2818.py running install_egg_info running egg_info writing rmsd.egg-info/PKG-INFO writing dependency_links to rmsd.egg-info/dependency_links.txt writing entry points to rmsd.egg-info/entry_points.txt writing requirements to rmsd.egg-info/requires.txt writing top-level names to rmsd.egg-info/top_level.txt reading manifest file 'rmsd.egg-info/SOURCES.txt' writing manifest file 'rmsd.egg-info/SOURCES.txt' Copying rmsd.egg-info to /construction/science/py-rmsd/stage/usr/local/lib/python3.7/site-packages/rmsd-1.3.2-py3.7.egg-info running install_scripts Installing calculate_rmsd script to /construction/science/py-rmsd/stage/usr/local/bin writing list of installed files to '/construction/science/py-rmsd/.PLIST.pymodtmp' ===> Creating unique files: Move MAN files needing SUFFIX ===> Creating unique files: Move files needing SUFFIX Move: bin/calculate_rmsd --> bin/calculate_rmsd-3.7 Link: @bin/calculate_rmsd --> bin/calculate_rmsd-3.7 ====> Compressing man pages (compress-man) ====> Running Q/A tests (stage-qa) Warning: You have disabled the licenses framework with DISABLE_LICENSES, unable to run checks SUCCEEDED 00:00:04 ------------------------------------------------------------------------------- -- Phase: package ------------------------------------------------------------------------------- ===> Building package for py37-rmsd-1.3.2_2 file sizes/checksums [14]: 0% file sizes/checksums [14]: 100% packing files [14]: 0% packing files [14]: 100% packing directories [0]: 0% packing directories [0]: 100% SUCCEEDED 00:00:00 TOTAL TIME 00:01:14